mRNA_F-serratus_M_contig137.2704.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig137.2704.1
Unique NamemRNA_F-serratus_M_contig137.2704.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig137.2704.1 vs. uniprot
Match: D8LH74_ECTSI (Mitochondrial import inner membrane translocase subunit TIM17 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH74_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 6.820e-48
Identity = 127/225 (56.44%), Postives = 152/225 (67.56%), Query Frame = 3 
Query:  183 YRRFQCLLLLVSAHWGCTALVDWTRITHVALRDSNCMEKHHCKQRVRSFDGFISRRPQHGAFGHRIRTSATAVASSPSHLVTGRSASGVLENCIEACVNTFGXXXXXXXXXXXXXXXXXGTFGKVPDVGLLKSVRIKAGQMGGDWGKLTAAFTGFTSLSTVIRGSNDRWDQVVGAAAAGAFLNRAKGPSGMVQGATTYGFFSLIFASQTKQDP-MDVVDVPVNAP 854
            Y R     LL+S   GC AL  W+R +  A      ++ HH          + SR P       +   +A AVAS+ SHL TGR+ASGV+EN          XXXXXXXXXXXXXXXXX +FG+VPDVG LKSV+ KA +MGG+WG+L+AAFTGFTS+STVIRG ND+WDQV+GA  AGAFLNRAKGP GM QGA TYG FSLIFA  + QD  +DVVD+PV+AP
Sbjct:    3 YCRLLLQGLLLSVALGCNALPGWSRNSVGAA-----VQPHHGL-------AWTSRTPTTRTLRRQFPVAA-AVAST-SHLTTGRTASGVMENXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGRVPDVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFAFPSGQDDELDVVDIPVDAP 213
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig137.2704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH74_ECTSI6.820e-4856.44Mitochondrial import inner membrane translocase su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig137contigF-serratus_M_contig137:141999..146818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue7.6e-41
Seed eggNOG ortholog2880.D8LH74
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Tim17/Tim22/Tim23/Pmp24 family
EggNOG OGs2E7AM@1,2SDXE@2759
Ec32 ortholog descriptionTim22-like protein
Ec32 orthologEc-24_000820.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1163
Cds size690
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929349.1339343-UTR-F-serratus_M_contig137:141998..1422981622929349.1339343-UTR-F-serratus_M_contig137:141998..142298Fucus serratus maleUTRF-serratus_M_contig137 141999..142298 -
1690962810.3065095-UTR-F-serratus_M_contig137:141998..1422981690962810.3065095-UTR-F-serratus_M_contig137:141998..142298Fucus serratus maleUTRF-serratus_M_contig137 141999..142298 -
1622929349.2264135-UTR-F-serratus_M_contig137:146645..1468181622929349.2264135-UTR-F-serratus_M_contig137:146645..146818Fucus serratus maleUTRF-serratus_M_contig137 146646..146818 -
1690962810.376378-UTR-F-serratus_M_contig137:146645..1468181690962810.376378-UTR-F-serratus_M_contig137:146645..146818Fucus serratus maleUTRF-serratus_M_contig137 146646..146818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929349.15399-CDS-F-serratus_M_contig137:142298..1424851622929349.15399-CDS-F-serratus_M_contig137:142298..142485Fucus serratus maleCDSF-serratus_M_contig137 142299..142485 -
1690962810.3248458-CDS-F-serratus_M_contig137:142298..1424851690962810.3248458-CDS-F-serratus_M_contig137:142298..142485Fucus serratus maleCDSF-serratus_M_contig137 142299..142485 -
1622929349.1713836-CDS-F-serratus_M_contig137:142776..1429381622929349.1713836-CDS-F-serratus_M_contig137:142776..142938Fucus serratus maleCDSF-serratus_M_contig137 142777..142938 -
1690962810.3370783-CDS-F-serratus_M_contig137:142776..1429381690962810.3370783-CDS-F-serratus_M_contig137:142776..142938Fucus serratus maleCDSF-serratus_M_contig137 142777..142938 -
1622929349.1877308-CDS-F-serratus_M_contig137:145679..1458111622929349.1877308-CDS-F-serratus_M_contig137:145679..145811Fucus serratus maleCDSF-serratus_M_contig137 145680..145811 -
1690962810.348739-CDS-F-serratus_M_contig137:145679..1458111690962810.348739-CDS-F-serratus_M_contig137:145679..145811Fucus serratus maleCDSF-serratus_M_contig137 145680..145811 -
1622929349.1999009-CDS-F-serratus_M_contig137:146154..1462441622929349.1999009-CDS-F-serratus_M_contig137:146154..146244Fucus serratus maleCDSF-serratus_M_contig137 146155..146244 -
1690962810.3586164-CDS-F-serratus_M_contig137:146154..1462441690962810.3586164-CDS-F-serratus_M_contig137:146154..146244Fucus serratus maleCDSF-serratus_M_contig137 146155..146244 -
1622929349.2137535-CDS-F-serratus_M_contig137:146526..1466451622929349.2137535-CDS-F-serratus_M_contig137:146526..146645Fucus serratus maleCDSF-serratus_M_contig137 146527..146645 -
1690962810.366876-CDS-F-serratus_M_contig137:146526..1466451690962810.366876-CDS-F-serratus_M_contig137:146526..146645Fucus serratus maleCDSF-serratus_M_contig137 146527..146645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig137.2704.1prot_F-serratus_M_contig137.2704.1Fucus serratus malepolypeptideF-serratus_M_contig137 142299..146645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig137.2704.1

>prot_F-serratus_M_contig137.2704.1 ID=prot_F-serratus_M_contig137.2704.1|Name=mRNA_F-serratus_M_contig137.2704.1|organism=Fucus serratus male|type=polypeptide|length=230bp
MSFYRRFQCLLLLVSAHWGCTALVDWTRITHVALRDSNCMEKHHCKQRVR
SFDGFISRRPQHGAFGHRIRTSATAVASSPSHLVTGRSASGVLENCIEAC
VNTFGSFIGGTITGCVIGAFLGGTFGKVPDVGLLKSVRIKAGQMGGDWGK
LTAAFTGFTSLSTVIRGSNDRWDQVVGAAAAGAFLNRAKGPSGMVQGATT
YGFFSLIFASQTKQDPMDVVDVPVNAPTK*
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mRNA from alignment at F-serratus_M_contig137:141999..146818-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig137.2704.1 ID=mRNA_F-serratus_M_contig137.2704.1|Name=mRNA_F-serratus_M_contig137.2704.1|organism=Fucus serratus male|type=mRNA|length=4820bp|location=Sequence derived from alignment at F-serratus_M_contig137:141999..146818- (Fucus serratus male)
CGGATGAGAATCCAGCGCCCAGAGTTGATGGACGAAGAAGGCGTATGCGA
ATCGGGAAAAATAAACACTTAAAGCAGTCCTACTTTGCACCAGATTCAAT
TTGAGATGACCATAGCTCTCTTCACGCAGGCGTGGTACGGTAGACAGTAG
CGCCTTTGACCAAGAGGTTCGTCATGAGCTTTTACCGTCGGTTCCAATGC
TTGCTGCTTCTGGTCTCTGCGCATTGGGGATGTACTGCACTGGTGGACTG
GACAAGGATCACCCATGTCGCGTTGCGAGATTCAAATTGCATGTGAGGCA
GTCTACGAAACCAGTACCAGTATTGCTGGTTGTCCTTGTAGCAAATCGTA
GCTCTCATGCAGCAGGAGGAATGCGGGGACGAACGACGCGATATTTTTAC
TTAACCTTCGTAGCGACGTGTGTTCAACGTTCATTTTTTTCTCAGGTTTC
TACCACGGGTAGCTTTCTGTGCATCAAAGCCAACTTCTCAATCGTTTCTA
GAAGTACCGACCACAGTAGGCTCTATAAACCAGGCAGCATGCCTCGATCT
TGTTGCTCATGGTTATGGCCACAGGGAGAAACATCACTGCAAACAAAGGG
TTCGATCATTCGACGGATTTATCTCACGCCGTCCACAACATGGAGCCTTT
GGACACCGAATCAGGTACATCAGTAGGTGGAGCGGTCGCGACATTGCAGT
ATTCTTGAAAAGTTACGTCTTGGGCCACAGGCTCACGGCCGCATACCCAC
CGCTTCACCGCACGCACCATGTGCGTCCCGCCCAGGATGTTCGTTCCTCA
ACTATAGTAGTATATACCGTACCTGTCTACACAAGTACTTCGTGCTCAAT
TCTTGTACAATACCTGACAGCCAACATGATCCCATCCAAAAACAGTTCCT
CTCGTTTCGTGTCTCATAATCAACATATTATTCGTTCACATTCAGCTTTA
CTCTACCGATACAAACCCATATGCCACTGAGTGTGCTTTTGAAATCATCT
GGAGCAGGACATCCGCGACTGCTGTGGCTTCGTCTCCATCGCACCTCGTT
ACGGGGAGGAGCGCGTCGGGCGTGTTGGAGAATTGTATCGAGGCCTGCGT
TAACACTTTTGGGTCTTTCATTGGTGGCACCATCACTGGGTGAGCGTCCC
CTCCCCCCTGCCTTGGCCCCTGTCCTTCTTGAGTCCTTGAGTGATACCTA
TAACTTTATTAAAAGTATTTGTATCTATGTCAAGCATCGCGTCTGCATAT
AGCATTATATTGACCAACCAACCGGGAATGATTGCCAAATATGTTCGTTA
TATTCCCTGTCCGCGCCTGAAATTATGGTGTCGCGAGACGAGTTCGGTCG
TCCCGTCCCGCGTCAACCGACGAATTCTCTATGCCTAGGCCAACTGTTCA
TCTTCACTTCTGTGACGGCCTTCTACCGTGTTGCTGTCTTTGTGTGCGTC
ACGGACGGTCACGGACGATAAATCTCATGTACCTCATCCAGAGCTAACCA
TTTGTGTGGGGACCGGTAGCTCAAAGGAGTATCTGATTCAAGACTATGCT
ATAGTCCGTGCCGTAGAACCCTTGTCGACGTAGTTTCTTCAGTTGCAAGG
ACAAATCGCTGAATGCGTGAATCAACAACAAGGGTTGAGCTGCACTACGG
GTTCGTGTATCTTTTTGTATGTCGCCCGATGTTCAGATTTTCAAAAGAAC
TACTTGGAACGTGCAACAAGTATTGATTGTTTTGTTTGCTGTATCCTCAC
TTTTTTCTGATGGGTCATAGCTCAATAAAGGCCCCTCAACAAAATATGCT
CGGTTGCAAATCCGACCACCTACAGCAACGTTGCCATCCCGCCTTTGGCC
ACGAAGGATTTTCCCATTCTGCACAGTATGTATGTATGTATGTATTGTCA
TCACATATAGCAGAGTATGGATCAACCGGGTAAGGTTGAACAAGGACAAT
AATATTCCCCTGTCCCCGTGCGTGCCTGAGAATTTGGTCTCGCGAGACGG
GATCAGCCGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCAT
CTCTCCCCGGTTCACGCTTGTAATAGTTTTTTATCGCGATGCAACTTCAG
CGCTCGTAACACTCTGCTAACCAAAAATGTTACCAGGTATGCTCTACGTA
CTTCCTTGTTACTCGGGCGACGATGTTATTGCGCTACCTGACGCTTTTAT
ACTTGGGAGGGGGTATCCTGCAGCAGCAGCGAACACCATGCGATATCTTG
TTGCAAACACCAGCTACTATAGTGGTAATACAAATACTGTGCTGCTGTTG
AGCGGCGCGTGATTTTGTTGTAACCAATACTTATTCTGTCGATGGTTCCT
TTCATGCCCGTCGAAAAGGATGTCTACTTTGTTTATTATTAATACTGCTG
TTTGTTATCAAGCTTCTCTGTGATTCGTGCTCACGAGTTCGCTCAAAACT
AGTATCGTTTCTTCGTTTCTTCTCAGACAACACGCAGTTAATACGAGTTG
CAAAAAACAGACTTTCACTTTCGGGACATACTTGCTCACGGTCACGGTCA
CGTAGCAGCGCTTCAGCACGGAGCATTCGACACAGAACTCGTTGCTAATC
TAAAGTCAGGGCTTTCGCAAAATAATCTCGCGTGTTGCCGGGTCGATGCC
CCGTCGTGCCGGCTCTCCTGGTTAGGCAGCTTGCTACGAGATGGCTGTTG
ACTCTCTAACTCCTCCGCTGTTGCTCTACTGCTGACGAAAACTTGAGGGC
GCCAGCGATTGATGCTCCTACAGTTTTCCCGGCCAGCTTCTCGTCACGCT
CGCCAATCAAAATAATCAAATTGTGATGCCGTGGCTCTCAGCTGAAGTAG
TGCTCACAAACACCACCAATGTTTAAAGAAAAATCTGAACGTATCTAAAC
CTATACTGGTACTGAAATATGATTCTGAGCATCCACACGGTCAGGGGGAA
ACAGAAAAGAATGTCAAAACGTTTAGGTGGAAACATAAGCTGTAAAGGCA
AAAACTGGTGCTTTGTGCGAGAGTCCTTTGACACGTGTAGTTACCGCTGT
GAACGCCAGAATACATTTTATCGGCTGGACAATCTAAATATTACTATAAT
CGCTGGTAGGGTATACACGGTACTTTCAACATGCCCACTTCATACCAATA
GTGGGTGTGGGAAAGAGAGGCATATATTAATTGGTCTATAGTAACCTGCC
AAGGCAGCACTCGTTCGGAACTACCTGGAGTTTTACTGGCTCTGTGCCGG
CAGACACTCGGCAGTAAACGACATCGGTACGCAATTGCATGACCCGATAA
ACTTGGGACTGATCCGATGGCGTATGGCGGTTTAAAATAATTATATGGAC
ACCGCCGCGGAACTCGGGAGTAATTCCGTATGTAAGCACCAGATTCAGCC
TGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACTGCCGAAATCGTC
TCGCGAGACCAAATTTTCAGGCACGAACGCGGACAGGGAAATATTTATTT
TCTCTGTTCAGCTGACCACGAGCAGGATTGGCAACCGTACCCGATTGATC
CGTACTCCTGCTATATGTGTGACCATACACACCATACAGTTACGGACGGT
GGAAACTGTTTTAAGTAATCAAGTCTTCCCCAAGCATCTGTGTTATATAC
ATTACTGAGCGGATTACCTCCGGATGTTTTACGAACCGCAGCCTTAGTGA
TTGCAAACAGCATATTTTTCGCAATCTATGTGCGTATGTATCTCTTGCAA
GTATGTCTCCCCTTTTTTTCGTGGATCTACTTTATTTATTAATATTAATA
GTAGACAACTGTTCGGATACGCCTACATGAGCGATGCGATTATTTCTGCT
CCAAACGTTGAAATGTTTGGTCCTTTTCAGTTGCGTCATAGGAGCATTTC
TCGGAGGAACGTTCGGCAAAGTGCCAGATGTCGGTCTACTCAAAAGCGTG
AGAATCAAGGCTGGACAAATGGGTGGCGACTGGGGCAAGTTGACGGCAGC
GTTTACCGGCTTCACGTCTCTTTCGACAGTAATTAGGGGAAGGTGGGTCG
AGACATCAATCATCTCTATCGGCGTTGCATACAGATGTGTAGTGTAAAGA
TATCGAAAACAGCTGCGACGTTCTCTGCGAAGAACAGATTCTATAAGATT
AAAACGGTCCTCGTCCTTGGACTAAAGGTTTGAAGGGGCGCATTTGAGTC
AGTCCTATATTAAGAGCTTCATAATGCTTCGAAATGCAGTACAGTACAGT
ACCATCGCATTACAAGTATGTATGGACAAATATTGCAGTATTGCATTATT
TATCCTCGTCCTCGCTTGTACCGTCTCGTGCAGTAACGACCGGTGGGATC
AGGTCGTCGGAGCTGCTGCGGCTGGGGCGTTCTTGAACAGAGCCAAGGGA
CCCAGCGGGATGGTGCAAGGAGCGACCACATATGGATTCTTCTCGCTAAT
CTTCGCGAGTCAGACCAAGCAAGATCCTATGGATGTTGTGGACGTGCCTG
TCAACGCTCCAACCAAATAATGACAGCTTTGTGTCTGGTGCGGCCGTCAC
AGCATCTACTATATCTGCTACTTTACACAAGGGATCCTATCGTTCCATTC
CATGATGATTCATGTCTATGAATAGGGAGATGGCGCTCTTGGGCCGGCTT
GTATTCTGTAGTAACGTGGCTCTCAGAAGAGTTGAAATGTTTTACGTCGA
CTATAATTTTCCCAGTTGTTGAAAACAGCAAGGACCCGGGTAGCGGCCAA
ATCGTGTCATGCTTCATGTTTGGCGACAATCGGTCTCCAGGTCGAAGCGT
TCGATTATTAATAATACCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig137:141999..146818-

>mRNA_F-serratus_M_contig137.2704.1 ID=mRNA_F-serratus_M_contig137.2704.1|Name=mRNA_F-serratus_M_contig137.2704.1|organism=Fucus serratus male|type=CDS|length=1380bp|location=Sequence derived from alignment at F-serratus_M_contig137:141999..146818- (Fucus serratus male)
ATGAGCTTTTACCGTCGGTTCCAATGCTTGCTGCTTCTGGTCTCTGCGCA
TTGGGGATGTACTGCACTGGTGGACTGGACAAGGATCACCCATGTCGCGT
TGCGAGATTCAAATTGCATATGAGCTTTTACCGTCGGTTCCAATGCTTGC
TGCTTCTGGTCTCTGCGCATTGGGGATGTACTGCACTGGTGGACTGGACA
AGGATCACCCATGTCGCGTTGCGAGATTCAAATTGCATGGAGAAACATCA
CTGCAAACAAAGGGTTCGATCATTCGACGGATTTATCTCACGCCGTCCAC
AACATGGAGCCTTTGGACACCGAATCAGGGAGAAACATCACTGCAAACAA
AGGGTTCGATCATTCGACGGATTTATCTCACGCCGTCCACAACATGGAGC
CTTTGGACACCGAATCAGGACATCCGCGACTGCTGTGGCTTCGTCTCCAT
CGCACCTCGTTACGGGGAGGAGCGCGTCGGGCGTGTTGGAGAATTGTATC
GAGGCCTGCGTTAACACTTTTGGGTCTTTCATTGGTGGCACCATCACTGG
GACATCCGCGACTGCTGTGGCTTCGTCTCCATCGCACCTCGTTACGGGGA
GGAGCGCGTCGGGCGTGTTGGAGAATTGTATCGAGGCCTGCGTTAACACT
TTTGGGTCTTTCATTGGTGGCACCATCACTGGTTGCGTCATAGGAGCATT
TCTCGGAGGAACGTTCGGCAAAGTGCCAGATGTCGGTCTACTCAAAAGCG
TGAGAATCAAGGCTGGACAAATGGGTGGCGACTGGGGCAAGTTGACGGCA
GCGTTTACCGGCTTCACGTCTCTTTCGACAGTAATTAGGGGAAGTTGCGT
CATAGGAGCATTTCTCGGAGGAACGTTCGGCAAAGTGCCAGATGTCGGTC
TACTCAAAAGCGTGAGAATCAAGGCTGGACAAATGGGTGGCGACTGGGGC
AAGTTGACGGCAGCGTTTACCGGCTTCACGTCTCTTTCGACAGTAATTAG
GGGAAGTAACGACCGGTGGGATCAGGTCGTCGGAGCTGCTGCGGCTGGGG
CGTTCTTGAACAGAGCCAAGGGACCCAGCGGGATGGTGCAAGGAGCGACC
ACATATGGATTCTTCTCGCTAATCTTCGCGAGTCAGACCAAGCAAGATCC
TATGGATGTTGTGGACGTGCCTGTCAACGCTCCAACCAAATAATAACGAC
CGGTGGGATCAGGTCGTCGGAGCTGCTGCGGCTGGGGCGTTCTTGAACAG
AGCCAAGGGACCCAGCGGGATGGTGCAAGGAGCGACCACATATGGATTCT
TCTCGCTAATCTTCGCGAGTCAGACCAAGCAAGATCCTATGGATGTTGTG
GACGTGCCTGTCAACGCTCCAACCAAATAA
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