mRNA_F-serratus_M_contig1369.2693.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1369.2693.1 vs. uniprot
Match: D7FVW1_ECTSI (Ribosomal RNA-processing protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW1_ECTSI) HSP 1 Score: 312 bits (800), Expect = 5.270e-105 Identity = 151/170 (88.82%), Postives = 162/170 (95.29%), Query Frame = 1
Query: 1 YHRGFREQVEKWPVHPLDIIIDWLGKYPKARVVDFGCGEARLAASVPNKVHSFDLVSPNSRVTACDMAHVPLKDASVHVAVFCLSLMGTNLADFLREANRVLVPGGLVKVAEVRSRFEGEEGGVERFLDVARKLGFDSKQMDRTNKMFLLAEFKKSNRRPQEGVAFEAKV 510
YHRGFREQVEKWPVHPLDIIIDWL KYPKARV DFGCGEARLAA+VPNKVHSFDLVSPN VTACDMA+VP+KDASVHVAVFCLSLMGTNLADFLREA+RVLVPGGLVKVAEVRSRFEGEEGGVERFL+V R+LGFD++QMDR+NKMFLLAEFKKS R+P+ GV FEAKV
Sbjct: 96 YHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTRRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKV 265
BLAST of mRNA_F-serratus_M_contig1369.2693.1 vs. uniprot
Match: A0A6H5KX03_9PHAE (Ribosomal RNA-processing protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX03_9PHAE) HSP 1 Score: 312 bits (799), Expect = 3.880e-102 Identity = 149/171 (87.13%), Postives = 161/171 (94.15%), Query Frame = 1
Query: 1 YHRGFREQVEKWPVHPLDIIIDWLGKYPKARVVDFGCGEARLAASVPNKVHSFDLVSPNSRVTACDMAHVPLKDASVHVAVFCLSLMGTNLADFLREANRVLVPGGLVKVAEVRSRFEGEEGGVERFLDVARKLGFDSKQMDRTNKMFLLAEFKKSNRRPQEGVAFEAKVC 513
YHRGFREQVEKWPVHPLDIIIDWL KYPKARV DFGCGEARLAA+VPNKVHSFDLVSPN VTACDMA+VP+KDASVHVA+FCLSLMGTNLADFLREA+RVLVPGGLVKVAEVRSRFEGEEGGVERFL+V ++LGFD+ QMDR+NKMFLLAEFKKS R+P+ GV FEAK C
Sbjct: 354 YHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAIFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTMQMDRSNKMFLLAEFKKSGRKPERGVEFEAKAC 524
BLAST of mRNA_F-serratus_M_contig1369.2693.1 vs. uniprot
Match: A0A836C7W6_9STRA (Ribosomal RNA-processing protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7W6_9STRA) HSP 1 Score: 268 bits (685), Expect = 5.030e-89 Identity = 126/171 (73.68%), Postives = 143/171 (83.63%), Query Frame = 1
Query: 1 YHRGFREQVEKWPVHPLDIIIDWLGKYPKARVVDFGCGEARLAASVPNKVHSFDLVSPNSRVTACDMAHVPLKDASVHVAVFCLSLMGTNLADFLREANRVLVPGGLVKVAEVRSRFEGEEGGVERFLDVARKLGFDSKQMDRTNKMFLLAEFKKSNRRPQEGVAFEAKVC 513
YHRGFREQVEKWPVHPLD+II WL KYPKA + DFGCGEARLA +VPN+ HSFDL +PN+ VTACDMAHVPL DASVH+AVFCLSLMGTNLADF+REA RVL PGGLVKVAEVRSRFEG GG+ FL V R+LGFD +Q D T+ MF++ EFKK++R P+ V F AK C
Sbjct: 46 YHRGFREQVEKWPVHPLDVIIRWLKKYPKAVIADFGCGEARLAQTVPNRCHSFDLCAPNAHVTACDMAHVPLPDASVHIAVFCLSLMGTNLADFVREARRVLKPGGLVKVAEVRSRFEGAPGGLNAFLGVMRRLGFDQRQCDNTSTMFVMMEFKKASRAPEADVEFTAKAC 216
BLAST of mRNA_F-serratus_M_contig1369.2693.1 vs. uniprot
Match: A0A024G7I7_9STRA (Ribosomal RNA-processing protein 8 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G7I7_9STRA) HSP 1 Score: 222 bits (566), Expect = 3.670e-70 Identity = 101/172 (58.72%), Postives = 135/172 (78.49%), Query Frame = 1
Query: 1 YHRGFREQVEKWPVHPLDIIIDWLGKYPKARVVDFGCGEARLAASVPNKVHSFDLVSPNSRVTACDMAHVPLKDASVHVAVFCLSLMGTNLADFLREANRVLVPGGLVKVAEVRSRFEGEE-GGVERFLDVARKLGFDSKQMDRTNKMFLLAEFKKSNRRPQEGVAFEAKVC 513
YH+GFREQV KWP++PLDI ID++ K+P A V DFGCGEARLA SVPN+VHSFDLV+PN V AC++AHVPL S+ +A++CL+LMGT + ++LREA+RV+ GG++K+AEV+SRFE ++ GG++ F+ RKLGFD ++ D NKMF+L EF+KSNR+ V E K C
Sbjct: 101 YHQGFREQVTKWPINPLDIFIDYIKKHPNAVVADFGCGEARLAQSVPNRVHSFDLVAPNDHVVACNIAHVPLNSKSIDIAIYCLALMGTTIPEYLREAHRVMKAGGILKIAEVKSRFETKQLGGIQGFISQLRKLGFDYQEKDERNKMFVLLEFQKSNRKKDTNVRIELKAC 272
BLAST of mRNA_F-serratus_M_contig1369.2693.1 vs. uniprot
Match: A0A0W8D147_PHYNI (Ribosomal RNA-processing protein 8 n=10 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D147_PHYNI) HSP 1 Score: 215 bits (548), Expect = 2.020e-67 Identity = 104/172 (60.47%), Postives = 130/172 (75.58%), Query Frame = 1
Query: 1 YHRGFREQVEKWPVHPLDIIIDWLGKYPKARVVDFGCGEARLAASVPNKVHSFDLVSPNSRVTACDMAHVPLKDASVHVAVFCLSLMGTNLADFLREANRVLVPGGLVKVAEVRSRFEGEE-GGVERFLDVARKLGFDSKQMDRTNKMFLLAEFKKSNRRPQEGVAFEAKVC 513
YH+GFRE +KWP +PLD ID++ ++PKA V DFGCG+ARLA SVPNKVHSFDLVS VTAC++A VPLKD+SV + V+CL+LMGT++ +++RE RVL PGG++KVAEV+SRFE E GG+E F+ RK+GFD K D NKMF+L EF KS RRPQ E K C
Sbjct: 102 YHQGFREMADKWPTNPLDTFIDFVKRHPKAVVADFGCGDARLAESVPNKVHSFDLVSRKPIVTACNIADVPLKDSSVDIGVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIEGFVQTLRKMGFDCKHKDERNKMFVLFEFVKSTRRPQNVGPIEFKAC 273
BLAST of mRNA_F-serratus_M_contig1369.2693.1 vs. uniprot
Match: A0A6A3U140_9STRA (Ribosomal RNA-processing protein 8 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U140_9STRA) HSP 1 Score: 215 bits (548), Expect = 2.490e-67 Identity = 102/172 (59.30%), Postives = 132/172 (76.74%), Query Frame = 1
Query: 1 YHRGFREQVEKWPVHPLDIIIDWLGKYPKARVVDFGCGEARLAASVPNKVHSFDLVSPNSRVTACDMAHVPLKDASVHVAVFCLSLMGTNLADFLREANRVLVPGGLVKVAEVRSRFEGEE-GGVERFLDVARKLGFDSKQMDRTNKMFLLAEFKKSNRRPQEGVAFEAKVC 513
YH+GFRE +KWP +PLD ID++ ++PKA V DFGCG+ARLA SVPNKVHSFDLVS VTAC++A VPLKD++V + V+CL+LMGT++ +++RE RVL PGG++KVAEV+SRFE E GG+E F+ RK+GFD K D NKMF+L EF KS+R+PQ+ E K C
Sbjct: 109 YHQGFREMADKWPTNPLDTFIDYVKRHPKAVVADFGCGDARLAESVPNKVHSFDLVSRKPHVTACNIADVPLKDSTVDIGVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIEGFVQTLRKMGFDCKHKDERNKMFVLFEFVKSSRKPQKVDPIEFKAC 280
BLAST of mRNA_F-serratus_M_contig1369.2693.1 vs. uniprot
Match: D0N5P9_PHYIT (Ribosomal RNA-processing protein 8 n=4 Tax=Phytophthora TaxID=4783 RepID=D0N5P9_PHYIT) HSP 1 Score: 214 bits (544), Expect = 8.910e-67 Identity = 102/172 (59.30%), Postives = 130/172 (75.58%), Query Frame = 1
Query: 1 YHRGFREQVEKWPVHPLDIIIDWLGKYPKARVVDFGCGEARLAASVPNKVHSFDLVSPNSRVTACDMAHVPLKDASVHVAVFCLSLMGTNLADFLREANRVLVPGGLVKVAEVRSRFEGEE-GGVERFLDVARKLGFDSKQMDRTNKMFLLAEFKKSNRRPQEGVAFEAKVC 513
YH+GFRE +KWP +PLD ID++ ++PKA V DFGCG+ARLA SVPNKVHSFDLVS VTAC++A VPLKD+SV +AV+CL+LMGT++ +++RE RVL PGG++KVAEV+SRFE E GG++ F+ RK+GFD K D NKMF+L E KS R+PQ E K C
Sbjct: 105 YHQGFREMADKWPTNPLDTFIDYVKRHPKAVVADFGCGDARLAESVPNKVHSFDLVSRKPIVTACNIADVPLKDSSVDIAVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIDGFVQTLRKMGFDCKHKDERNKMFVLFELVKSTRKPQNVAPIEFKAC 276
BLAST of mRNA_F-serratus_M_contig1369.2693.1 vs. uniprot
Match: A0A3M6V8R3_9STRA (Ribosomal RNA-processing protein 8 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8R3_9STRA) HSP 1 Score: 213 bits (541), Expect = 2.530e-66 Identity = 100/172 (58.14%), Postives = 131/172 (76.16%), Query Frame = 1
Query: 1 YHRGFREQVEKWPVHPLDIIIDWLGKYPKARVVDFGCGEARLAASVPNKVHSFDLVSPNSRVTACDMAHVPLKDASVHVAVFCLSLMGTNLADFLREANRVLVPGGLVKVAEVRSRFEGEE-GGVERFLDVARKLGFDSKQMDRTNKMFLLAEFKKSNRRPQEGVAFEAKVC 513
YH+GFRE +KWP +PLD ID++ +YPKA V DFGCG+ARL+ SVPNKVHSFDLVS VTAC++A VPLKD+SV + V+CL+LMGT++ +++RE +RVL PGG++ VAEV+SRFE E GG++ F+ RK+GFD K D NKMF+L +F KS+R+PQ E K C
Sbjct: 105 YHQGFREMADKWPTNPLDNFIDYVKRYPKAVVADFGCGDARLSESVPNKVHSFDLVSCKPHVTACNIADVPLKDSSVDIGVYCLALMGTSVREYIREVHRVLKPGGILMVAEVKSRFESETLGGIDGFVQTLRKMGFDCKHKDERNKMFVLFDFVKSSRKPQNVRPIEFKAC 276
BLAST of mRNA_F-serratus_M_contig1369.2693.1 vs. uniprot
Match: A0A3R7KAK8_9STRA (Ribosomal RNA-processing protein 8 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KAK8_9STRA) HSP 1 Score: 212 bits (540), Expect = 3.590e-66 Identity = 101/172 (58.72%), Postives = 130/172 (75.58%), Query Frame = 1
Query: 1 YHRGFREQVEKWPVHPLDIIIDWLGKYPKARVVDFGCGEARLAASVPNKVHSFDLVSPNSRVTACDMAHVPLKDASVHVAVFCLSLMGTNLADFLREANRVLVPGGLVKVAEVRSRFEGEE-GGVERFLDVARKLGFDSKQMDRTNKMFLLAEFKKSNRRPQEGVAFEAKVC 513
YH+GFREQ +KWPV+PLD ID++ ++PKA V DFGCG+ARLA SV NKVHSFDLVS VTAC++A VPLKD+S + V+CL+LMG N+ +++RE RVL PGG++KVAEV+SRFE E GG++ F++V K+GFD K D NKMF+L EF KS R+ Q+ E K C
Sbjct: 105 YHQGFREQADKWPVNPLDTFIDYVKRHPKAVVADFGCGDARLAESVSNKVHSFDLVSRKPHVTACNIADVPLKDSSTDIGVYCLALMGKNVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIDGFVEVLHKMGFDCKNKDERNKMFVLFEFIKSTRKAQDAGPLELKAC 276
BLAST of mRNA_F-serratus_M_contig1369.2693.1 vs. uniprot
Match: H3G5K6_PHYRM (Ribosomal RNA-processing protein 8 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5K6_PHYRM) HSP 1 Score: 207 bits (528), Expect = 3.920e-65 Identity = 103/179 (57.54%), Postives = 130/179 (72.63%), Query Frame = 1
Query: 1 YHRGFREQVEKWPVHPLDIIIDW-------LGKYPKARVVDFGCGEARLAASVPNKVHSFDLVSPNSRVTACDMAHVPLKDASVHVAVFCLSLMGTNLADFLREANRVLVPGGLVKVAEVRSRFEGEE-GGVERFLDVARKLGFDSKQMDRTNKMFLLAEFKKSNRRPQEGVAFEAKVC 513
YH+GFREQ +KWP +PLD ID+ L ++PKA V DFGCG+ARLA SVPN VHSFDLVS VTAC++A VPLKDASV + V+CL+LMGT++ +++RE RVL PGG++KVAEV+SRFE E GG+ F+ + K+GFD K D NKMF+L EF KS+R+PQ E K C
Sbjct: 40 YHQGFREQADKWPTNPLDTFIDYVKCVADALRRHPKAVVADFGCGDARLAESVPNTVHSFDLVSRKPHVTACNIADVPLKDASVDIGVYCLALMGTSIREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIVGFVQILSKMGFDCKSKDERNKMFVLFEFVKSSRKPQNVRPVELKAC 218 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1369.2693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1369.2693.1 >prot_F-serratus_M_contig1369.2693.1 ID=prot_F-serratus_M_contig1369.2693.1|Name=mRNA_F-serratus_M_contig1369.2693.1|organism=Fucus serratus male|type=polypeptide|length=171bp YHRGFREQVEKWPVHPLDIIIDWLGKYPKARVVDFGCGEARLAASVPNKVback to top mRNA from alignment at F-serratus_M_contig1369:82669..83865- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1369.2693.1 ID=mRNA_F-serratus_M_contig1369.2693.1|Name=mRNA_F-serratus_M_contig1369.2693.1|organism=Fucus serratus male|type=mRNA|length=1197bp|location=Sequence derived from alignment at F-serratus_M_contig1369:82669..83865- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1369:82669..83865- >mRNA_F-serratus_M_contig1369.2693.1 ID=mRNA_F-serratus_M_contig1369.2693.1|Name=mRNA_F-serratus_M_contig1369.2693.1|organism=Fucus serratus male|type=CDS|length=1026bp|location=Sequence derived from alignment at F-serratus_M_contig1369:82669..83865- (Fucus serratus male)back to top |