mRNA_F-serratus_M_contig1368.2689.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1368.2689.1
Unique NamemRNA_F-serratus_M_contig1368.2689.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1368.2689.1 vs. uniprot
Match: D8LN78_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN78_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.040e-17
Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 YAYGATRGVTHSAEALQIRRVLENLQVSIGAWESFDGVEACTTRAGEAPGARRAVEAAGSAGDRVIIVAGECADYRQVMTHAASIGL 261
            +A G  RG+ +++ A Q+RRVLE    S+G +  FDG E+C   AG+A G R+AVEA  +  D V+IV GECADYRQVMT AA  GL
Sbjct:  179 FAEGPLRGLAYTSLAQQMRRVLEGQGGSVGVYAGFDGGESCKAGAGDAKGVRKAVEAVRAGRDSVVIVLGECADYRQVMTFAAMRGL 265
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BLAST of mRNA_F-serratus_M_contig1368.2689.1 vs. uniprot
Match: A0A6H5JK37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK37_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.670e-17
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 YAYGATRGVTHSAEALQIRRVLENLQVSIGAWESFDGVEACTTRAGEAPGARRAVEAAGSAGDRVIIVAGECADYRQVMTHAASIGL 261
            +A G +RG+ +++ A Q+RRVLE     +G +  FDG E+C   AG+A G R+AVEA  +  D V+IV GECADYRQVMT AA  GL
Sbjct:  157 FAEGPSRGLAYASLAQQMRRVLEGQGDPVGVYAGFDGGESCKAGAGDAKGVRKAVEAVRAGRDNVVIVLGECADYRQVMTFAAMRGL 243
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1368.2689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN78_ECTSI3.040e-1752.87Tyrosine kinase specific for activated (GTP-bound)... [more]
A0A6H5JK37_9PHAE5.670e-1751.72Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1368contigF-serratus_M_contig1368:248205..248911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog2880.D8LN78
KEGG koko:K17535
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Exons3
Model size264
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1368.2689.1prot_F-serratus_M_contig1368.2689.1Fucus serratus malepolypeptideF-serratus_M_contig1368 248205..248909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929346.2177198-CDS-F-serratus_M_contig1368:248204..2482551622929346.2177198-CDS-F-serratus_M_contig1368:248204..248255Fucus serratus maleCDSF-serratus_M_contig1368 248205..248255 +
1690962808.995165-CDS-F-serratus_M_contig1368:248204..2482551690962808.995165-CDS-F-serratus_M_contig1368:248204..248255Fucus serratus maleCDSF-serratus_M_contig1368 248205..248255 +
1622929346.2312593-CDS-F-serratus_M_contig1368:248493..2486731622929346.2312593-CDS-F-serratus_M_contig1368:248493..248673Fucus serratus maleCDSF-serratus_M_contig1368 248494..248673 +
1690962809.0067625-CDS-F-serratus_M_contig1368:248493..2486731690962809.0067625-CDS-F-serratus_M_contig1368:248493..248673Fucus serratus maleCDSF-serratus_M_contig1368 248494..248673 +
1622929346.247456-CDS-F-serratus_M_contig1368:248879..2489091622929346.247456-CDS-F-serratus_M_contig1368:248879..248909Fucus serratus maleCDSF-serratus_M_contig1368 248880..248909 +
1690962809.0143924-CDS-F-serratus_M_contig1368:248879..2489091690962809.0143924-CDS-F-serratus_M_contig1368:248879..248909Fucus serratus maleCDSF-serratus_M_contig1368 248880..248909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1368.2689.1

>prot_F-serratus_M_contig1368.2689.1 ID=prot_F-serratus_M_contig1368.2689.1|Name=mRNA_F-serratus_M_contig1368.2689.1|organism=Fucus serratus male|type=polypeptide|length=87bp
YAYGATRGVTHSAEALQIRRVLENLQVSIGAWESFDGVEACTTRAGEAPG
ARRAVEAAGSAGDRVIIVAGECADYRQVMTHAASIGL
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mRNA from alignment at F-serratus_M_contig1368:248205..248911+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1368.2689.1 ID=mRNA_F-serratus_M_contig1368.2689.1|Name=mRNA_F-serratus_M_contig1368.2689.1|organism=Fucus serratus male|type=mRNA|length=707bp|location=Sequence derived from alignment at F-serratus_M_contig1368:248205..248911+ (Fucus serratus male)
TACGCGTACGGCGCCACGCGTGGGGTGACGCACTCTGCGGAAGCGTTGCA
GGTAGGGGGGAGCAGGGAGGTACACCTCTCTTATGGCACCTGAAGTAGGA
TGCACTCCCAGTTACCTAACAAAACAGTGTTCGGGGAAGACCATTTTGGC
GAGTCAACTATGCCGGAGCTGGCTGGCGACACTGGGTAATATCTTTAGAA
GTATGAATTCGTGTGTTCGTTTGTGTAGGTTGCATAACGCGTCGTTACAC
CAAAACCACAACGATTATCTTGGTTGCCACACACGGCAGATTCGGCGGGT
CCTAGAAAACCTACAGGTGTCGATTGGAGCGTGGGAGAGTTTCGACGGGG
TTGAGGCGTGTACCACCAGGGCTGGAGAGGCGCCGGGGGCTCGCAGAGCC
GTGGAGGCTGCAGGAAGCGCGGGCGATAGGGTCATCATCGTGGCGGGGGA
ATGTGCCGACTACCGCCAGGTGGGGGGGCATAATAGTGTAGTGGCGTTCA
TTTCTTTCTATATACTTTGTACTTTACATTTGTTGAGTACTAGTTGTATA
TCGTTTTTGTAACGGTAGATAAAAAAATGCGTCGAATCCGATCTAGTCGA
TGGAGTCCCAACTCGGGGTTTCATTTGCTCTCCTGTCTTTGGCCGACTCT
TTTTCTTTCGCCCCGCGTACTCCAGGTGATGACGCACGCGGCCTCGATCG
GACTGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1368:248205..248911+

>mRNA_F-serratus_M_contig1368.2689.1 ID=mRNA_F-serratus_M_contig1368.2689.1|Name=mRNA_F-serratus_M_contig1368.2689.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig1368:248205..248911+ (Fucus serratus male)
TACGCGTACGGCGCCACGCGTGGGGTGACGCACTCTGCGGAAGCGTTGCA
GTACGCGTACGGCGCCACGCGTGGGGTGACGCACTCTGCGGAAGCGTTGC
AGATTCGGCGGGTCCTAGAAAACCTACAGGTGTCGATTGGAGCGTGGGAG
AGTTTCGACGGGGTTGAGGCGTGTACCACCAGGGCTGGAGAGGCGCCGGG
GGCTCGCAGAGCCGTGGAGGCTGCAGGAAGCGCGGGCGATAGGGTCATCA
TCGTGGCGGGGGAATGTGCCGACTACCGCCAGATTCGGCGGGTCCTAGAA
AACCTACAGGTGTCGATTGGAGCGTGGGAGAGTTTCGACGGGGTTGAGGC
GTGTACCACCAGGGCTGGAGAGGCGCCGGGGGCTCGCAGAGCCGTGGAGG
CTGCAGGAAGCGCGGGCGATAGGGTCATCATCGTGGCGGGGGAATGTGCC
GACTACCGCCAGGTGATGACGCACGCGGCCTCGATCGGACTGGTGATGAC
GCACGCGGCCTCGATCGGACTG
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