mRNA_F-serratus_M_contig1368.2688.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1368.2688.1
Unique NamemRNA_F-serratus_M_contig1368.2688.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1368.2688.1 vs. uniprot
Match: A0A6H5JNR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.320e-8
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:  226 GSWIVNHDPNGVPYWINDVSGEATYHLFTPHIGM-GPPIRHVGNDQPHCLYLPIAP 390
            GSWIVN+D  G+PYW NDVS E+TY L        G P++HVG+       LP+ P
Sbjct:   10 GSWIVNYDDEGLPYWTNDVSEESTYRLLVQQTDQPGMPLKHVGDGVNPPWSLPLTP 65
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1368.2688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNR8_9PHAE4.320e-848.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1368contigF-serratus_M_contig1368:183685..188223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size444
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1368.2688.1prot_F-serratus_M_contig1368.2688.1Fucus serratus malepolypeptideF-serratus_M_contig1368 183685..188202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929345.818559-CDS-F-serratus_M_contig1368:183684..1838591622929345.818559-CDS-F-serratus_M_contig1368:183684..183859Fucus serratus maleCDSF-serratus_M_contig1368 183685..183859 -
1690962808.830743-CDS-F-serratus_M_contig1368:183684..1838591690962808.830743-CDS-F-serratus_M_contig1368:183684..183859Fucus serratus maleCDSF-serratus_M_contig1368 183685..183859 -
1622929345.8475163-CDS-F-serratus_M_contig1368:184210..1843971622929345.8475163-CDS-F-serratus_M_contig1368:184210..184397Fucus serratus maleCDSF-serratus_M_contig1368 184211..184397 -
1690962808.8397796-CDS-F-serratus_M_contig1368:184210..1843971690962808.8397796-CDS-F-serratus_M_contig1368:184210..184397Fucus serratus maleCDSF-serratus_M_contig1368 184211..184397 -
1622929345.8666995-CDS-F-serratus_M_contig1368:188141..1882021622929345.8666995-CDS-F-serratus_M_contig1368:188141..188202Fucus serratus maleCDSF-serratus_M_contig1368 188142..188202 -
1690962808.8497956-CDS-F-serratus_M_contig1368:188141..1882021690962808.8497956-CDS-F-serratus_M_contig1368:188141..188202Fucus serratus maleCDSF-serratus_M_contig1368 188142..188202 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929345.8775518-UTR-F-serratus_M_contig1368:188202..1882231622929345.8775518-UTR-F-serratus_M_contig1368:188202..188223Fucus serratus maleUTRF-serratus_M_contig1368 188203..188223 -
1690962808.8593876-UTR-F-serratus_M_contig1368:188202..1882231690962808.8593876-UTR-F-serratus_M_contig1368:188202..188223Fucus serratus maleUTRF-serratus_M_contig1368 188203..188223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1368.2688.1

>prot_F-serratus_M_contig1368.2688.1 ID=prot_F-serratus_M_contig1368.2688.1|Name=mRNA_F-serratus_M_contig1368.2688.1|organism=Fucus serratus male|type=polypeptide|length=141bp
MIDVPFFDWLFPRDRPLLPKESSGGRQNSRATASSKVSKPNSQKGGCFGT
GGGSNGGGGKNRNDSARPGSWIVNHDPNGVPYWINDVSGEATYHLFTPHI
GMGPPIRHVGNDQPHCLYLPIAPLPSSMTGNRGGNNNNNSS
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mRNA from alignment at F-serratus_M_contig1368:183685..188223-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1368.2688.1 ID=mRNA_F-serratus_M_contig1368.2688.1|Name=mRNA_F-serratus_M_contig1368.2688.1|organism=Fucus serratus male|type=mRNA|length=4539bp|location=Sequence derived from alignment at F-serratus_M_contig1368:183685..188223- (Fucus serratus male)
AGAATAGCTGCTGCTGTGACCATGATCGACGTGCCTTTCTTCGACTGGTT
GTTTCCACGCGATCGACCGCTGCTGCCCAAAGGTGAGCTGATACTTTTTC
ACTCAGCACTCTACGCATGTATCTTGGAACCACATCTCAGTCAAGGCAAC
ACCTTCTGTGGTAGGATTGAAATGCGAGGAAAAGTTGCTGGTGCAGGGGT
GTACTCGCGGACGTTTTTGCGCCAACACCAACGCCTTTGTTATACGTACT
GTTTTTCGACACAATACGTACAGCTCGAGGACTTCGGTGATATCACGGAA
CTGTGATATCACTGCCCTCGTACAACCAGCAGCGGACTCGACTATCCACC
AGTAAGTCGGTGCTGCAATGGTCTAGCCAAGGAAGATTGGGTATCGAGCG
GTGTTTGCGAACATATCAATGAAGGTACACGGAAGTACGGTTTATTGGGT
GTGGAGGTTTAGGGACGAAGAAGAGTTCGACCAAAAAAAATACAGACAGC
ACCGTAAGTACAAGTTTCCACTGCCCTAGCTCTACACCAAAAAAAGAGAG
GCGAGGAAATATTTCGAGTATCTGTTTCCGGTCACACGATACCGTGGTTG
TGGTGCGTGCGACAGCGCAACCACCGTACCGTAGTAGTTGATCACACGGT
TGGTTGTAGCAGCCAGGCTCTTGATCCTCCTACGACTACTCGTATGTCAC
GGGCTCTTGATCCTCCGACGACTACTCGTATGTCACTATAGTACACAGCA
GCAGCTGTATTGTAACAATTACTCCTGGTACATACCACGTGCTGTACTGT
ACTGTACTGTAGTATATGTACCGTTGCTTTTCTCGAGTCCACATAAAAAT
AGGCATATCGTGCATTTTTTATTATATGTTCACGTGATCGTATGGGTAAG
AGCTTTCGTTTGAGCTGTCCCCGAGCCGACTCGGCGAGGTGGTCCAGAAA
GTAAGATTTCGGGCCTTATTCCTAAAAAAAAATCGTTCTATATCTCACCA
AAAATATAAATATATGTATTTCCAGCCTATGATCCCACCCAAACGCTTTG
ACATTTTGCCCCTGACTGGGGGGTGCTCAGAAGGTCTAGATGCATTTAGA
TTTTTCTTTAAACAACTAAACTACCAAGTACTCTACGTACTGTACTACCA
AGTACTCTACGTACTGTACTGCACTGTGGTATATGTACCGTTGCTTCCGT
GTTTTCTTCGCTCTAGCCACACAACAACTACCAGGTATCTACGCACGTAT
CTAAAAACTACTTCTCGTACATACCACGTACTGTACTGTAGTATATGAAC
CGTTGTTTTTCTCGCTCTAAGTCCATATATCTTGATTACAGTACTGTAGT
ACCGAGGTACTTCGTAGTACTTCTACGAACAATACGTTTCGAAAGCTCAT
ACGGAGTAATAATTAGGCCGACTCTTATGCATACGAAAAACTTAAACGAA
AATGGACCAAATCAGTTTTTTCGGGTTTTTCCAATCTTATGGGTACGAGA
ATGGTCCAGATTCGTATGGCCAAATCCGTTTGAGCTTTTCGTTACAGGAA
AACAAACGGATTTGGTGCCCAAATCCGTTTGCTTCAGCGATACGAATCTG
CAAACGGATTTCGCACGCCGTGCAACTATTACTACATTTGGCCAATGACG
CTGCTATTAATCAACTCAAATACATAATTACTCTGCCAGGAATGCCGCGG
CTATCGCCAAGGGTATGGTCGAAGTGAGGTCCATAGTTTTTTACTCAAGA
GAAGAGAAAGGACGCTGGCGGCAAGGTCCGCGGCGCTTGAGATGCTCGAC
GTTTAGGAGGGTAGGCGGTTTGGGAGGCTTGATGATGATGACTCCGCGAA
GATTAAGTGGATGCGGCACGTTTATCCCCGAGTTGGCTACACATATCTTC
TATAGCCGCCTCCTGTCGTCGGATGATACGTACCGGAAGCAGATTTTTCC
TCATCTGCGGCGCATAACGACGCGACCAGCTGTTCCAGACTACAAAAGCT
TTCACAGTTGCCGTTGAACTCCGCAAAGCGCTTGGTACACCATGACCCCC
GTGTAACGATACGACGTGCTGCGTGCATTCGTTGTGGTGGAATTATGTCT
CGATGCATCCGTTCGCCCGAGTTTGATATAATTATCGCCAGGGCAACGTA
CTGTATCCGAGTCCGAGTACAGCAGTACATAAGTATGGGTACATAGACTG
AATCGAAGACGTTCTAGTGAAAACCGTACCAGCAGACGAACCTGCTGCAA
TTTCGGGAAGCCCCGCCCGACGAGTATCGTAACCGCACACATGAACAAAA
CTTACCTCGACCCTTGATCCAATGGAATAGTGGAGCGAGTTTAGAAGAGC
CGTGGAATTTTGGCAGCAAGCAAGCAACAGCATCGGTGCGGTATCTGTCT
TTAGTTCTGGACGTAGTGTACAAAATTAGTGTAGCCGGGCTGTGCTCGTG
TTCATCCACCGCCAATGCGCTTTACTTGTAAGTACAGTAGTACTACTACA
GTAGAGGTCCAGCTCGTCTGCCCTTTCTTGCATATCTCACCCTAATGTTT
TAAAAAATTGGCGGCCATTTCCATTCGGCAATTTTATTGCTGTACCTCAC
CCGCATAAGCAAGCCTGTCCTAGTTTGTCGAAAACACAGCAAACCAAAAC
CGTATGCATAAGATGACCTTCGCTCGTGTTTTTGGTCCCGAAAAAAAACG
GGTTTGGTCCATTTTCGTATAAGTTTTTCGTATGCATAAGAGTCGGCCTT
ACTGTAGTATACTTGTGCGTGTTTGTGTATGTGTGTGTGTTTATTTATTA
TTAAAGTACACATAACCGCGCAATCCGGCCCTGTCGTCCTAGTCATTCTA
TGCCACTCGCATTGATCCTCCCAGTGTTGTCATCCTATTTACTCTGGGCG
TACGACTTGTGGACGTACGACTGCGCCGAGACTCGAACTGACGTCCCAAC
GTCCGACGTTTTCGAGGTTACCAAAATGAACCACCGGGGCGACCGGCGAT
GTTATTATACACGTACTTTTATAGAGGATACGGGTAACATGACGATGATG
TTTGTGCTGTTTCTTGAATACTTGTACTTTCTTCAGCAGATCTTGAAGTA
TCGTACAACAATTATATTGCCTACTCTATTGGGCACTGCTGCTGCTGCTG
CTGTAGTTTCTGCTTGTAGCTACAGCTGTCCGCAAAATCTCCTCGACTTT
TTGTCACAACTGAACGGGCAGGATACGGCACCGACGATTCTACACTACAA
CATCGGCAGTTATAACAAGCTAATGTACTATTGTGCGTGTGCGAGTATGA
TGATAGTAGTTCTTTCAACAAACTTAACCTCAACCTCCCCAGCCAGCGTT
GCTTCTCCGTGCTCCCCGAAGGTCGCACCGATTTTATAGAATGAGTGTAA
TTAATAAGGGGATGGCTTTATGGTTCGAATGATTTGTTGTCCACGCAGTA
TGCCTAGGCTAAACGTGGTGTCATCTTGTCAAGCGTTAACCTCGCTCGGA
CGAAATCGTAACCACACGCGTACGAGATAAATTGATTACTCGCGCCTCCG
ATTTCTTCGTACCCGCGGTGGCGAAGGCACGGCTGCAGGAAATCTCTATT
CTAGGGGCGCTAGTCATAACACAGCCTAGCCGCGTCGTTTTGCAGTGACA
TCACACACCCTCTTGAGGCGACGAAGGGTTGACTCGGCGCGCTTTTTTTC
TGCTCTGATGATCGAAGTTTCGATTTTACTTCACGTTCGGACGTATTTCG
CCCCCGATGAACCCTCCTCCCTGCCCCCTCGACGCCGTGTTCACGACACC
GTGCTACCCGGGGCGCACCGCAGAAGAATCGTCAGGAGGACGACAAAATA
GCAGGGCTACGGCGTCGTCGAAGGTGAGCAAGCCAAATTCGCAAAAGGGC
GGGTGTTTTGGTACCGGCGGAGGTTCGAATGGCGGTGGAGGCAAAAATAG
GAACGACTCTGCGAGACCGGGCTCATGGATCGTCAACCACGACCCAAATG
GTGTTCCGTACTGGTGAGTCACGTCCGTTCACAGTAGTGGGGAAAAGCTC
GACATTGCATCCAGGCAATCTGTTGTCGCTACATCTAGCCCGTCGGACAC
TTTCATCTCTCGCGATAACTCAAATAGAGAGCCTGACTAAGCCTTATCAA
CGGGCAACGGGCATTGGATGGCACAGATGAACAGAAACACCCCCATCATT
GCTGGTGGCAAACGTTCGTGAAATGGGAAGATGCCTGTATCTCTTCTGTG
TAATTTACTAGTCAGTGACTGGTTGTTCTGGCCTTAACGCCTACCGAGAG
TTTCCTCGTGATGACGACCTCCTGCCTTGCTGCTTGTCGCCCTCGGAACC
CTAACCCGTCGAAGGATAAACGACGTGAGCGGAGAGGCCACATATCATCT
GTTTACCCCGCACATCGGAATGGGCCCGCCGATCAGGCACGTGGGAAACG
ACCAACCGCATTGCCTATACCTCCCTATCGCGCCTCTGCCTAGCTCGATG
ACCGGCAATAGGGGCGGAAACAACAACAACAATAGCAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1368:183685..188223-

>mRNA_F-serratus_M_contig1368.2688.1 ID=mRNA_F-serratus_M_contig1368.2688.1|Name=mRNA_F-serratus_M_contig1368.2688.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig1368:183685..188223- (Fucus serratus male)
ATGATCGACGTGCCTTTCTTCGACTGGTTGTTTCCACGCGATCGACCGCT
GCTGCCCAAAGATGATCGACGTGCCTTTCTTCGACTGGTTGTTTCCACGC
GATCGACCGCTGCTGCCCAAAGAATCGTCAGGAGGACGACAAAATAGCAG
GGCTACGGCGTCGTCGAAGGTGAGCAAGCCAAATTCGCAAAAGGGCGGGT
GTTTTGGTACCGGCGGAGGTTCGAATGGCGGTGGAGGCAAAAATAGGAAC
GACTCTGCGAGACCGGGCTCATGGATCGTCAACCACGACCCAAATGGTGT
TCCGTACTGAATCGTCAGGAGGACGACAAAATAGCAGGGCTACGGCGTCG
TCGAAGGTGAGCAAGCCAAATTCGCAAAAGGGCGGGTGTTTTGGTACCGG
CGGAGGTTCGAATGGCGGTGGAGGCAAAAATAGGAACGACTCTGCGAGAC
CGGGCTCATGGATCGTCAACCACGACCCAAATGGTGTTCCGTACTGGATA
AACGACGTGAGCGGAGAGGCCACATATCATCTGTTTACCCCGCACATCGG
AATGGGCCCGCCGATCAGGCACGTGGGAAACGACCAACCGCATTGCCTAT
ACCTCCCTATCGCGCCTCTGCCTAGCTCGATGACCGGCAATAGGGGCGGA
AACAACAACAACAATAGCAGCGATAAACGACGTGAGCGGAGAGGCCACAT
ATCATCTGTTTACCCCGCACATCGGAATGGGCCCGCCGATCAGGCACGTG
GGAAACGACCAACCGCATTGCCTATACCTCCCTATCGCGCCTCTGCCTAG
CTCGATGACCGGCAATAGGGGCGGAAACAACAACAACAATAGCAGC
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