mRNA_F-serratus_M_contig1367.2681.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1367.2681.1
Unique NamemRNA_F-serratus_M_contig1367.2681.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1367.2681.1 vs. uniprot
Match: A0A6H5KF55_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF55_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.510e-19
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   25 EWEPPWSGVPRPSELVPPSILQSCRRDNRLLHEDKIIFDPGYINWVCDLTQLVVPPKTP 201
            EWEPPW GVPRPSELVPPSI Q+C  +NRL   DK +F   Y++WVCDLT LV PP+ P
Sbjct:  291 EWEPPWMGVPRPSELVPPSIFQACWMENRLFLMDKNVFSSEYLDWVCDLTALVPPPRVP 349
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BLAST of mRNA_F-serratus_M_contig1367.2681.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 3.530e-19
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   25 EWEPPWSGVPRPSELVPPSILQSCRRDNRLLHEDKIIFDPGYINWVCDLTQLVVPPKTP 201
            EWEPPW GVPRPSELVPPSI Q+C  +NRL   DK +F   Y++WVCDLT LV PP+ P
Sbjct: 1970 EWEPPWMGVPRPSELVPPSIFQACWMENRLFLMDKNVFSSEYLDWVCDLTALVPPPRVP 2028
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1367.2681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF55_9PHAE3.510e-1966.10USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FK75_ECTSI3.530e-1966.10Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1367contigF-serratus_M_contig1367:181740..182352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue2e-16
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929345.5505698-CDS-F-serratus_M_contig1367:181740..1819261622929345.5505698-CDS-F-serratus_M_contig1367:181740..181926Fucus serratus maleCDSF-serratus_M_contig1367 181741..181926 -
1690962808.6748583-CDS-F-serratus_M_contig1367:181740..1819261690962808.6748583-CDS-F-serratus_M_contig1367:181740..181926Fucus serratus maleCDSF-serratus_M_contig1367 181741..181926 -
1622929345.5670018-CDS-F-serratus_M_contig1367:182262..1823521622929345.5670018-CDS-F-serratus_M_contig1367:182262..182352Fucus serratus maleCDSF-serratus_M_contig1367 182263..182352 -
1690962808.6877754-CDS-F-serratus_M_contig1367:182262..1823521690962808.6877754-CDS-F-serratus_M_contig1367:182262..182352Fucus serratus maleCDSF-serratus_M_contig1367 182263..182352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1367.2681.1prot_F-serratus_M_contig1367.2681.1Fucus serratus malepolypeptideF-serratus_M_contig1367 181741..182352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1367.2681.1

>prot_F-serratus_M_contig1367.2681.1 ID=prot_F-serratus_M_contig1367.2681.1|Name=mRNA_F-serratus_M_contig1367.2681.1|organism=Fucus serratus male|type=polypeptide|length=92bp
KAALREEKEWEPPWSGVPRPSELVPPSILQSCRRDNRLLHEDKIIFDPGY
INWVCDLTQLVVPPKTPFLPSAASTPLPPSNAPGATAEVGDG
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mRNA from alignment at F-serratus_M_contig1367:181740..182352-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1367.2681.1 ID=mRNA_F-serratus_M_contig1367.2681.1|Name=mRNA_F-serratus_M_contig1367.2681.1|organism=Fucus serratus male|type=mRNA|length=613bp|location=Sequence derived from alignment at F-serratus_M_contig1367:181740..182352- (Fucus serratus male)
AAAGCGGCCCTTCGTGAAGAGAAGGAATGGGAACCCCCCTGGTCGGGAGT
GCCTCGACCATCGGAGCTCGTGCCTCCATCGATCCTCCAGGTTCGATATA
TATATATATGCATATATGTATATGATACGTTTGATAGTTGTTTGTTTTTC
TCTCCGCGGGAGGCAGTGCCCCGATCGCTCGTTGCAAGTGTGCAAGTGAC
TGTCCTAATGGTACTAATAATCGATATTACAGTATTATACAATATTATAC
AGTACAGTAATACCTTTCAACGCTTTCGGTCTTGGAGAAAAATTATCGCA
CACACCGAGCAAAGTAAAAAACCTCCGTCTGACTCGAACAAGCGCGCGGT
CCTTGCGTTGGGATAATGAACCTTTCACCTTTCATCTTTCATCTTCGCCG
TTTTCATTTTCATTCTCATGGCGCAGTCTTGTCGGAGGGATAATCGCCTC
CTTCATGAGGACAAGATTATCTTCGATCCGGGGTACATCAACTGGGTTTG
CGACCTGACCCAGTTGGTAGTCCCGCCGAAGACACCCTTTCTTCCCTCGG
CGGCGAGTACACCCTTACCGCCAAGCAACGCCCCGGGGGCCACAGCCGAG
GTCGGCGATGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1367:181740..182352-

>mRNA_F-serratus_M_contig1367.2681.1 ID=mRNA_F-serratus_M_contig1367.2681.1|Name=mRNA_F-serratus_M_contig1367.2681.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig1367:181740..182352- (Fucus serratus male)
AAAGCGGCCCTTCGTGAAGAGAAGGAATGGGAACCCCCCTGGTCGGGAGT
GCCTCGACCATCGGAGCTCGTGCCTCCATCGATCCTCCAGAAAGCGGCCC
TTCGTGAAGAGAAGGAATGGGAACCCCCCTGGTCGGGAGTGCCTCGACCA
TCGGAGCTCGTGCCTCCATCGATCCTCCAGTCTTGTCGGAGGGATAATCG
CCTCCTTCATGAGGACAAGATTATCTTCGATCCGGGGTACATCAACTGGG
TTTGCGACCTGACCCAGTTGGTAGTCCCGCCGAAGACACCCTTTCTTCCC
TCGGCGGCGAGTACACCCTTACCGCCAAGCAACGCCCCGGGGGCCACAGC
CGAGGTCGGCGATGGATCTTGTCGGAGGGATAATCGCCTCCTTCATGAGG
ACAAGATTATCTTCGATCCGGGGTACATCAACTGGGTTTGCGACCTGACC
CAGTTGGTAGTCCCGCCGAAGACACCCTTTCTTCCCTCGGCGGCGAGTAC
ACCCTTACCGCCAAGCAACGCCCCGGGGGCCACAGCCGAGGTCGGCGATG
GA
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