mRNA_F-serratus_M_contig1367.2680.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1367.2680.1
Unique NamemRNA_F-serratus_M_contig1367.2680.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1367.2680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1367contigF-serratus_M_contig1367:171129..172603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size294
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1367.2680.1prot_F-serratus_M_contig1367.2680.1Fucus serratus malepolypeptideF-serratus_M_contig1367 171129..172603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929345.4699008-CDS-F-serratus_M_contig1367:171128..1711501622929345.4699008-CDS-F-serratus_M_contig1367:171128..171150Fucus serratus maleCDSF-serratus_M_contig1367 171129..171150 -
1690962808.642569-CDS-F-serratus_M_contig1367:171128..1711501690962808.642569-CDS-F-serratus_M_contig1367:171128..171150Fucus serratus maleCDSF-serratus_M_contig1367 171129..171150 -
1622929345.486908-CDS-F-serratus_M_contig1367:171836..1719671622929345.486908-CDS-F-serratus_M_contig1367:171836..171967Fucus serratus maleCDSF-serratus_M_contig1367 171837..171967 -
1690962808.652304-CDS-F-serratus_M_contig1367:171836..1719671690962808.652304-CDS-F-serratus_M_contig1367:171836..171967Fucus serratus maleCDSF-serratus_M_contig1367 171837..171967 -
1622929345.5055897-CDS-F-serratus_M_contig1367:172462..1726031622929345.5055897-CDS-F-serratus_M_contig1367:172462..172603Fucus serratus maleCDSF-serratus_M_contig1367 172463..172603 -
1690962808.6614988-CDS-F-serratus_M_contig1367:172462..1726031690962808.6614988-CDS-F-serratus_M_contig1367:172462..172603Fucus serratus maleCDSF-serratus_M_contig1367 172463..172603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1367.2680.1

>prot_F-serratus_M_contig1367.2680.1 ID=prot_F-serratus_M_contig1367.2680.1|Name=mRNA_F-serratus_M_contig1367.2680.1|organism=Fucus serratus male|type=polypeptide|length=98bp
DLNGPSSKGRPNTNLSEQAIDQANRLLRQLMQAVPRVIAEAKADGHTGVQ
QPYCLEMLQLMTHLLSGSDTERKSLERTLPLFLENLFDLDSLKQPEDY
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mRNA from alignment at F-serratus_M_contig1367:171129..172603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1367.2680.1 ID=mRNA_F-serratus_M_contig1367.2680.1|Name=mRNA_F-serratus_M_contig1367.2680.1|organism=Fucus serratus male|type=mRNA|length=1475bp|location=Sequence derived from alignment at F-serratus_M_contig1367:171129..172603- (Fucus serratus male)
GATTTGAATGGACCATCATCTAAGGGACGACCGAACACCAACTTGTCAGA
ACAAGCCATAGATCAGGCGAACCGGCTGCTGCGTCAGCTGATGCAGGCGG
TGCCGAGGGTCATTGCGGAGGCTAAAGCTGACGGTCATACGGTACGTACA
CTATGTTTTTTCGGCCTTTGATATTTTTTCTAAGGCTTTCTCTTTATTTA
CTCTATGCGATAGTAGGATTATATGAGACATGATATCAGATTTAAGGAGC
CTTCCAACAGCAGCGATCTGTACTATTAATACAATATAACTTTAAAACTC
GTGGAGGAGCTTTTTTTCCTTGGCCCAAAGTCCTTGGCCCATCTGTTTAT
ATATACAGTAGACCATGAGCGGGATTGGCCACCGTGTAAAGTAGTTTCTT
CCAACCAATGCGCTGAATGTGAGAAACAACAACAACAACAACTATATAAT
GTGGTGTAGCGGTAACCCAGCACCAAGGACTGTTTTTTGTGTTGTCATAA
TCGTATGTGTATGCTATCTCTCTGTCTCTTACCATAAATCTTGTATTTTA
TTATGGTTGTATCGAATTCTCGACCACTATTTTAAGTACGTCATGCTTCT
TGTCTGTAATATGTCTATAATATGTATGTATACCAGGGAGTGCAGCAGCC
ATATTGCTTGGAGATGCTGCAGCTTATGACCCATCTCCTGAGCGGCAGCG
ACACGGAACGGAAGAGCCTGGAAAGGACCCTGCCCCTGTTCCTTGAAAAC
TTATTCGACCTAGATAGGTGAGGCACCTGTTCCCCATTTCCTCCAGACGT
ACCATTTGTGGAGTTACTAAACATCTTGAGAAAGCCCAGGGTTTCCTCTG
TCAAGAAAATACTATTATAGAGTGGGATATAAAAGAAATACTAGAGTAGG
ATATGCTTGTGTTCGCTTACCCCCCACTCCGCCGACAAATGCTCGCTGGG
TATATATAGTATAGATGATACAGTATACAGTATAATGCATGTACGTATCT
ATACAAACCACTCATTTTATCCAGAAAACGTTGTTCCAGCGGTGCGACGA
TCATAGCATATCATAGTATTGTATAGTATAGTTTAGTATAGCAATAGCAT
AGTATAGTATAGTATAGCGTAGCATAGTACCTGGTATAGTATAGTATAGC
ATAACATAGCATAGCATAGCATAGCATAGCACAGCATAGTGTAGTATAGT
ATAGTAAAGGGTACAGTACTACAGTAGCTCGAGTGCCTTTTAATAATATT
AAAAAAACATGGTTAGTCTAGACGTCAGCAGTGACTAGTAATATTAAATA
GTATTATACTTTGTGATTAATAATTGCACAAGATTGAAGTATACTGGTAC
ACATTACTGTGGGGGTTTTTATTTGTAGCAAGATTAGAAAAAAATCGTTA
CTGCTGTAACAGTACTAGACTTTGTTTTGTATTGATGATACCACCCATTT
CAGTCTGAAGCAACCGGAAGATTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1367:171129..172603-

>mRNA_F-serratus_M_contig1367.2680.1 ID=mRNA_F-serratus_M_contig1367.2680.1|Name=mRNA_F-serratus_M_contig1367.2680.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig1367:171129..172603- (Fucus serratus male)
GATTTGAATGGACCATCATCTAAGGGACGACCGAACACCAACTTGTCAGA
ACAAGCCATAGATCAGGCGAACCGGCTGCTGCGTCAGCTGATGCAGGCGG
TGCCGAGGGTCATTGCGGAGGCTAAAGCTGACGGTCATACGGATTTGAAT
GGACCATCATCTAAGGGACGACCGAACACCAACTTGTCAGAACAAGCCAT
AGATCAGGCGAACCGGCTGCTGCGTCAGCTGATGCAGGCGGTGCCGAGGG
TCATTGCGGAGGCTAAAGCTGACGGTCATACGGGAGTGCAGCAGCCATAT
TGCTTGGAGATGCTGCAGCTTATGACCCATCTCCTGAGCGGCAGCGACAC
GGAACGGAAGAGCCTGGAAAGGACCCTGCCCCTGTTCCTTGAAAACTTAT
TCGACCTAGATAGGGAGTGCAGCAGCCATATTGCTTGGAGATGCTGCAGC
TTATGACCCATCTCCTGAGCGGCAGCGACACGGAACGGAAGAGCCTGGAA
AGGACCCTGCCCCTGTTCCTTGAAAACTTATTCGACCTAGATAGTCTGAA
GCAACCGGAAGATTACTCTGAAGCAACCGGAAGATTAC
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