mRNA_F-serratus_M_contig1360.2658.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1360.2658.1
Unique NamemRNA_F-serratus_M_contig1360.2658.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1360.2658.1 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.710e-10
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   19 QGKYDDAEPLFKRALAIREETLGPLHPDVAESLNNLALL 135
            QGKYDDAE L++R+LAIRE+ LGP HPDVA+SLNN  LL
Sbjct:   16 QGKYDDAEQLYERSLAIREKVLGPEHPDVAQSLNNRELL 54
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BLAST of mRNA_F-serratus_M_contig1360.2658.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.510e-10
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   10 IAFQGKYDDAEPLFKRALAIREETLGPLHPDVAESLNNLALL 135
            I FQGKY++A PL++R+LAIRE+ LGP HPDVA+SLNN ALL
Sbjct:  795 ITFQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRALL 836
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BLAST of mRNA_F-serratus_M_contig1360.2658.1 vs. uniprot
Match: A0A6H5JPL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.890e-10
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    4 LPIAFQGKYDDAEPLFKRALAIREETLGPLHPDVAESLNNLALLLRS 144
            LP+ FQGK ++A  LF R+LAIRE+ LGP HPDVA SLNNL+ LL S
Sbjct:   75 LPVTFQGKPEEAGALFNRSLAIREKALGPDHPDVATSLNNLSCLLES 121
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BLAST of mRNA_F-serratus_M_contig1360.2658.1 vs. uniprot
Match: U9W4Q0_9CYAN (Kinesin light chain 1 (Fragment) n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9W4Q0_9CYAN)

HSP 1 Score: 60.1 bits (144), Expect = 7.990e-10
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   19 QGKYDDAEPLFKRALAIREETLGPLHPDVAESLNNLA 129
            QG+Y++AEPL++R+L IREE LGP HPDV  SLNNLA
Sbjct:    2 QGRYEEAEPLYQRSLGIREEQLGPQHPDVVTSLNNLA 38
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BLAST of mRNA_F-serratus_M_contig1360.2658.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 8.890e-10
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    4 LPIAFQGKYDDAEPLFKRALAIREETLGPLHPDVAESLNNLALLLRS 144
            LP  FQGK ++A PL KR+LAI+E  LGP HPDVA SLNNL  LL S
Sbjct: 1968 LPFPFQGKLEEAGPLVKRSLAIKERVLGPDHPDVATSLNNLGCLLES 2014
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BLAST of mRNA_F-serratus_M_contig1360.2658.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.200e-9
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 ALPIAFQGKYDDAEPLFKRALAIREETLGPLHPDVAESLNNLALLLRS 144
            AL +  QGKYD+A  L++R+LAIRE+ LGP HPDVA+SLNN A+LL S
Sbjct:  825 ALLLKAQGKYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWAVLLES 872
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BLAST of mRNA_F-serratus_M_contig1360.2658.1 vs. uniprot
Match: A0A1D8TRT8_9CYAN (Uncharacterized protein n=1 Tax=Moorena producens PAL-8-15-08-1 TaxID=1458985 RepID=A0A1D8TRT8_9CYAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.210e-9
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   19 QGKYDDAEPLFKRALAIREETLGPLHPDVAESLNNLALLLRS 144
            QGKY +A PL +RAL IR+E LG  HPDVAESLNNLALL +S
Sbjct:   69 QGKYSEAIPLAERALEIRQEILGEEHPDVAESLNNLALLYKS 110
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BLAST of mRNA_F-serratus_M_contig1360.2658.1 vs. uniprot
Match: UPI001F0F39F4 (tetratricopeptide repeat protein n=1 Tax=Thiorhodococcus mannitoliphagus TaxID=329406 RepID=UPI001F0F39F4)

HSP 1 Score: 60.8 bits (146), Expect = 1.330e-9
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   19 QGKYDDAEPLFKRALAIREETLGPLHPDVAESLNNLA 129
            QG+Y +AEPL KRALA+REETLGP HPDVA SL+N+A
Sbjct:    8 QGRYTEAEPLQKRALALREETLGPKHPDVAMSLSNMA 44
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BLAST of mRNA_F-serratus_M_contig1360.2658.1 vs. uniprot
Match: A0A1D8CYT2_CHLLM (Uncharacterized protein n=2 Tax=Chlorobaculum limnaeum TaxID=274537 RepID=A0A1D8CYT2_CHLLM)

HSP 1 Score: 62.4 bits (150), Expect = 2.710e-9
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   22 GKYDDAEPLFKRALAIREETLGPLHPDVAESLNNLALL 135
            G+YD+AEPLF+RAL I E+TLGP HPDVA S NNLALL
Sbjct:  212 GRYDEAEPLFRRALTIGEKTLGPNHPDVAASRNNLALL 249
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BLAST of mRNA_F-serratus_M_contig1360.2658.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 57.4 bits (137), Expect = 6.340e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   19 QGKYDDAEPLFKRALAIREETLGPLHPDVAESLNNLA 129
            QGKY++AEPL++RAL IRE  LGP HP VA +LNNLA
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLA 40
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1360.2658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8Z8_9PHAE1.710e-1074.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJK0_9PHAE2.510e-1071.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPL8_9PHAE5.890e-1065.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
U9W4Q0_9CYAN7.990e-1070.27Kinesin light chain 1 (Fragment) n=1 Tax=Leptolyng... [more]
A0A6H5KHN5_9PHAE8.890e-1065.96CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4D0_9PHAE1.200e-964.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1D8TRT8_9CYAN1.210e-971.43Uncharacterized protein n=1 Tax=Moorena producens ... [more]
UPI001F0F39F41.330e-975.68tetratricopeptide repeat protein n=1 Tax=Thiorhodo... [more]
A0A1D8CYT2_CHLLM2.710e-976.32Uncharacterized protein n=2 Tax=Chlorobaculum limn... [more]
UPI0013D295286.340e-970.27tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1360contigF-serratus_M_contig1360:193711..194286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.6749716-CDS-F-serratus_M_contig1360:193710..1938511622929341.6749716-CDS-F-serratus_M_contig1360:193710..193851Fucus serratus maleCDSF-serratus_M_contig1360 193711..193851 -
1690962806.6136274-CDS-F-serratus_M_contig1360:193710..1938511690962806.6136274-CDS-F-serratus_M_contig1360:193710..193851Fucus serratus maleCDSF-serratus_M_contig1360 193711..193851 -
1622929341.6885638-CDS-F-serratus_M_contig1360:194139..1942861622929341.6885638-CDS-F-serratus_M_contig1360:194139..194286Fucus serratus maleCDSF-serratus_M_contig1360 194140..194286 -
1690962806.623428-CDS-F-serratus_M_contig1360:194139..1942861690962806.623428-CDS-F-serratus_M_contig1360:194139..194286Fucus serratus maleCDSF-serratus_M_contig1360 194140..194286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1360.2658.1prot_F-serratus_M_contig1360.2658.1Fucus serratus malepolypeptideF-serratus_M_contig1360 193711..194286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1360.2658.1

>prot_F-serratus_M_contig1360.2658.1 ID=prot_F-serratus_M_contig1360.2658.1|Name=mRNA_F-serratus_M_contig1360.2658.1|organism=Fucus serratus male|type=polypeptide|length=96bp
ALPIAFQGKYDDAEPLFKRALAIREETLGPLHPDVAESLNNLALLLRSQG
KYDNAEPLSKRALAIREETLGPRHPDVALSLNNLAGLLNSQVMWH*
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mRNA from alignment at F-serratus_M_contig1360:193711..194286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1360.2658.1 ID=mRNA_F-serratus_M_contig1360.2658.1|Name=mRNA_F-serratus_M_contig1360.2658.1|organism=Fucus serratus male|type=mRNA|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig1360:193711..194286- (Fucus serratus male)
GCCTTACCTATCGCGTTTCAGGGCAAGTACGACGACGCAGAGCCGCTTTT
CAAGCGTGCCCTCGCCATCCGTGAGGAAACGTTAGGTCCTTTACATCCGG
ATGTGGCCGAAAGTCTAAACAACCTGGCGTTATTACTGCGATCACAGGTA
ATGTGGCATTGGTCGTGATCCTTCGACTCGCCGTTCGGTATTTCGTATGT
GAGTAGGTTTGAAGCTGAACGAAAGTCATGACTTGTCATTCAAGCACCCA
TATGAGAGCGGAACGATTCATTTGCGCGTTTTTTTGAGGACGGACGGGGA
TGGGGAAATTTTTTTGCAAACTTTGTCAAACAGTCATTTCAGTGGCCACG
TAGTCGGGGGAATGAGGCGACATGGTTGACCACTTGGCCCACCCGAATTA
TGATTATCACCATCACGTGCTTTCTCGCAAATCAGGGCAAGTACGACAAC
GCTGAGCCGCTTTCCAAGCGTGCCCTCGCCATTCGTGAGGAAACGTTAGG
TCCTCGACATCCGGATGTGGCTTTAAGTCTGAACAACCTTGCTGGTTTGC
TGAATTCACAGGTAATGTGGCATTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1360:193711..194286-

>mRNA_F-serratus_M_contig1360.2658.1 ID=mRNA_F-serratus_M_contig1360.2658.1|Name=mRNA_F-serratus_M_contig1360.2658.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig1360:193711..194286- (Fucus serratus male)
GCCTTACCTATCGCGTTTCAGGGCAAGTACGACGACGCAGAGCCGCTTTT
CAAGCGTGCCCTCGCCATCCGTGAGGAAACGTTAGGTCCTTTACATCCGG
ATGTGGCCGAAAGTCTAAACAACCTGGCGTTATTACTGCGATCACAGGCC
TTACCTATCGCGTTTCAGGGCAAGTACGACGACGCAGAGCCGCTTTTCAA
GCGTGCCCTCGCCATCCGTGAGGAAACGTTAGGTCCTTTACATCCGGATG
TGGCCGAAAGTCTAAACAACCTGGCGTTATTACTGCGATCACAGGGCAAG
TACGACAACGCTGAGCCGCTTTCCAAGCGTGCCCTCGCCATTCGTGAGGA
AACGTTAGGTCCTCGACATCCGGATGTGGCTTTAAGTCTGAACAACCTTG
CTGGTTTGCTGAATTCACAGGTAATGTGGCATTGAGGCAAGTACGACAAC
GCTGAGCCGCTTTCCAAGCGTGCCCTCGCCATTCGTGAGGAAACGTTAGG
TCCTCGACATCCGGATGTGGCTTTAAGTCTGAACAACCTTGCTGGTTTGC
TGAATTCACAGGTAATGTGGCATTGA
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