mRNA_F-serratus_M_contig1358.2652.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1358.2652.1
Unique NamemRNA_F-serratus_M_contig1358.2652.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1358.2652.1 vs. uniprot
Match: D7G6W3_ECTSI (Spindle pole body component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.610e-35
Identity = 65/115 (56.52%), Postives = 91/115 (79.13%), Query Frame = 1 
Query:   13 AAAETKTLEYGNTASLREAVDSCATLTNARLVHLIMDQYQLRSHLRILKKFLLHGQAKNVMLALVEALGPELDKRAQKLFKHNLTGIVDGVIKNSTIME-ESENLSRIKTRMFTG 354
            AAA+  TLEYGNT S    V+SC+ LT+ARLVHL++  Y+L+SHLR+LKKFLLHGQ  ++ML L+E LGPELDK+A  +++HN+ GIV+G IK S I++ E+E+++RI  ++F G
Sbjct:   11 AAAQATTLEYGNTTSPTAVVESCSALTDARLVHLMLGPYRLKSHLRVLKKFLLHGQG-DLMLTLIEVLGPELDKKATVIYRHNVMGIVEGAIKTSAILQDEAEDVARIGVKIFGG 124
[Close]
BLAST of mRNA_F-serratus_M_contig1358.2652.1 vs. uniprot
Match: D7G6W1_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.170e-34
Identity = 69/116 (59.48%), Postives = 95/116 (81.90%), Query Frame = 1 
Query:   10 QAAAETKTLEYGNTASLREAVDSCATLTNARLVHLIMDQYQLRSHLRILKKFLLHGQAKNVMLALVEALGPELDKRAQKLFKHNLTGIVDGVIKNSTIME-ESENLSRIKTRMFTG 354
            +AAA+  TLEYGNT SLR  V+SC+ LTNARLVHL++  Y+L+SHLR+LKKFLLHGQ  ++ML L+E LGPELDK+A  +++HN+ GIV+GVIK S I++ E+E+++RI  ++F G
Sbjct:  513 KAAAQATTLEYGNTISLRAVVESCSALTNARLVHLMLGPYRLKSHLRVLKKFLLHGQG-DLMLTLIEVLGPELDKKATVIYRHNVMGIVEGVIKTSAILQDEAEDVARIGVKIFGG 627
[Close]
BLAST of mRNA_F-serratus_M_contig1358.2652.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.510e-30
Identity = 65/116 (56.03%), Postives = 87/116 (75.00%), Query Frame = 1 
Query:   13 AAAETKTLEYGNTASLREAVDSCATLTNARLVHLIMDQYQLRSHLRILKKFLLHGQAKNVMLALVEALGPELDKRAQKLFKHNLTGIVDGVIKNSTIMEESEN--LSRIKTRMFTG 354
            AAA+  TLEYGNT SLR  V+SC+ LT +RLVHL++  Y+L+SHLR+LKKFLLHGQ  ++ML L+E LGPELDK+A  + +HN+ GIV+GVIK S I+++       RI  ++ TG
Sbjct: 1345 AAAQATTLEYGNTTSLRAVVESCSALTKSRLVHLMLGPYRLKSHLRVLKKFLLHGQG-DLMLTLIEVLGPELDKKATVICRHNVMGIVEGVIKTSAILQDEAGDVAIRIGVKISTG 1459
[Close]
BLAST of mRNA_F-serratus_M_contig1358.2652.1 vs. uniprot
Match: A0A7S3H068_9STRA (Spindle pole body component (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H068_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.870e-13
Identity = 35/83 (42.17%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   28 KTLEYGNTASLREAVDSCATLTNARLVHLIMDQYQLRSHLRILKKFLLHGQAKNVMLALVEALGPELDKRAQKLFKHNLTGIV 276
            +TL +G  A+L++ V S +   +A+L++L+M ++ +++HL  LKKF+L GQ  + +  L++ +GPEL +RA +LF+HNLTGI+
Sbjct:   23 QTLRFGGEATLQDIVYSLSASIDAKLLNLMMSRFYVQTHLLALKKFMLLGQG-DFVTCLMDGVGPELKRRANQLFRHNLTGIL 104
[Close]
BLAST of mRNA_F-serratus_M_contig1358.2652.1 vs. uniprot
Match: W7T6I2_9STRA (Spindle pole body component n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6I2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.780e-11
Identity = 42/113 (37.17%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:   16 AAETKTLEYGNTASLREAVDSCATLTNARLVHLIMD-QYQLRSHLRILKKFLLHGQAKNVMLALVEALGPELDKRAQKLFKHNLTGIVDGVIKNSTIM-EESENLSRIKTRMF 348
            AAE     +     L+  VD  A + NARL+ L+M  +YQL +HLR LKKF+   Q  + +  L++A+GPEL K A +L++H+LTG ++  ++ S    E+++ L+R+  R+ 
Sbjct:  167 AAELYEFSHDKMDGLQGVVDGVAAVVNARLLSLLMGPRYQLMAHLRALKKFITLAQG-DFVTCLLDAVGPELSKSADQLYRHDLTGKLEAALRTSNAQYEDTDILNRVGVRLL 278
[Close]
BLAST of mRNA_F-serratus_M_contig1358.2652.1 vs. uniprot
Match: A0A433QZS3_9FUNG (Spindle pole body component n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QZS3_9FUNG)

HSP 1 Score: 69.3 bits (168), Expect = 2.540e-11
Identity = 38/106 (35.85%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:   34 LEYGNTASLREAVDSCATLTNARLVHLIMDQYQLRSHLRILKKFLLHGQAKNVMLALVEALGPELDKRAQKLFKHNLTGIVDGVIKNSTIM-EESENLSRIKTRMF 348
            L+YG+  ++  ++D+  T T+ RL+ L+ ++Y+L  H R LK++LL GQ   +   L+++LG  LDK A  L++HNLTG ++  I+ S    ++ E L R+  R+ 
Sbjct:  547 LKYGDIVTVESSIDAAYTETSRRLLDLLSNKYKLMEHFRALKRYLLLGQGDFIQY-LMDSLGDGLDKAANTLYRHNLTGTLETAIRASNAQYDDPEILRRLDVRLL 651
[Close]
BLAST of mRNA_F-serratus_M_contig1358.2652.1 vs. uniprot
Match: E5R017_ARTGP (Spindle pole body component n=9 Tax=Arthrodermataceae TaxID=34384 RepID=E5R017_ARTGP)

HSP 1 Score: 69.3 bits (168), Expect = 2.560e-11
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:   28 KTLEYGNTASLREAVDSCATLTNARLVHLIMDQYQLRSHLRILKKFLLHGQAKNVMLALVEALGPELDKRAQKLFKHNLTGIVDGVIKNSTIMEES-ENLSRIKTRMF 348
            KTL+YG+TA+L   +D     T ARL+ L+  +++L  HL+ LKK+LL GQ   + L L+E+L   LD+ A   ++H LT  ++  I++S    +S E L R+  RM 
Sbjct:  545 KTLQYGDTATLETYIDEAYKTTMARLIFLMDTKFKLFDHLKALKKYLLLGQGDFIAL-LMESLASNLDRPANSQYRHTLTAQLEHAIRSSNAQHDSPEVLRRLDARML 651
[Close]
BLAST of mRNA_F-serratus_M_contig1358.2652.1 vs. uniprot
Match: A0A068RJG3_9FUNG (mRNA export factor GLE1 n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RJG3_9FUNG)

HSP 1 Score: 69.3 bits (168), Expect = 2.600e-11
Identity = 37/104 (35.58%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:   40 YGNTASLREAVDSCATLTNARLVHLIMDQYQLRSHLRILKKFLLHGQAKNVMLALVEALGPELDKRAQKLFKHNLTGIVDGVIKNSTIM-EESENLSRIKTRMF 348
            YG+   +  ++D+    T+ RL+ L+  +Y+L  HLR LK++LL GQ  + +  L++ LGP L++ A+ LF+HNLTGI++  +++S    ++ E L+R+  R+ 
Sbjct: 1058 YGDIPEVERSIDATYRETSRRLLDLLKTKYKLMDHLRALKRYLLLGQG-DFIQQLMDNLGPNLNRPAKTLFRHNLTGILETAVRSSNAQYDDPEVLNRLDVRLM 1160
[Close]
BLAST of mRNA_F-serratus_M_contig1358.2652.1 vs. uniprot
Match: A0A162PXG4_PHYB8 (Spindle pole body component (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162PXG4_PHYB8)

HSP 1 Score: 68.6 bits (166), Expect = 4.470e-11
Identity = 37/107 (34.58%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:   31 TLEYGNTASLREAVDSCATLTNARLVHLIMDQYQLRSHLRILKKFLLHGQAKNVMLALVEALGPELDKRAQKLFKHNLTGIVDGVIKNSTIM-EESENLSRIKTRMF 348
            T +YG+  ++  ++D     T+ +L++L+  +Y+L  HLR LK++LL GQ  + +  L++ LGP L   A KLF+HNLTG+++  I+ S    ++ + L+R+  R+ 
Sbjct:  276 TFKYGDVQAVERSIDVTYLETSKQLINLLKRKYKLMEHLRALKRYLLLGQG-DFIQHLMDTLGPNLSMPANKLFRHNLTGVLETAIRASNAQYDDVDILNRLDVRLL 381
[Close]
BLAST of mRNA_F-serratus_M_contig1358.2652.1 vs. uniprot
Match: A0A022VRY9_TRIRU (Spindle pole body component n=3 Tax=Trichophyton rubrum TaxID=5551 RepID=A0A022VRY9_TRIRU)

HSP 1 Score: 67.4 bits (163), Expect = 1.210e-10
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:   28 KTLEYGNTASLREAVDSCATLTNARLVHLIMDQYQLRSHLRILKKFLLHGQAKNVMLALVEALGPELDKRAQKLFKHNLTGIVDGVIKNSTIMEES-ENLSRIKTRMF 348
            KTL+YG+ A+L   +D     T ARL+ L+  +++L  HL+ LKK+LL GQ   + L L+E+L   LD+ A   ++H LT  ++  I++S    +S E L R+  RM 
Sbjct:  549 KTLQYGDNATLETYIDEAYKTTMARLIFLMDTKFKLFDHLKALKKYLLLGQGDFIAL-LMESLASNLDRPANSQYRHTLTAQLEHAIRSSNAQHDSPEVLRRLDARML 655
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1358.2652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W3_ECTSI1.610e-3556.52Spindle pole body component n=1 Tax=Ectocarpus sil... [more]
D7G6W1_ECTSI1.170e-3459.48Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
D7G720_ECTSI2.510e-3056.03NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A7S3H068_9STRA2.870e-1342.17Spindle pole body component (Fragment) n=1 Tax=Spu... [more]
W7T6I2_9STRA1.780e-1137.17Spindle pole body component n=3 Tax=Monodopsidacea... [more]
A0A433QZS3_9FUNG2.540e-1135.85Spindle pole body component n=2 Tax=Jimgerdemannia... [more]
E5R017_ARTGP2.560e-1138.89Spindle pole body component n=9 Tax=Arthrodermatac... [more]
A0A068RJG3_9FUNG2.600e-1135.58mRNA export factor GLE1 n=1 Tax=Lichtheimia corymb... [more]
A0A162PXG4_PHYB84.470e-1134.58Spindle pole body component (Fragment) n=1 Tax=Phy... [more]
A0A022VRY9_TRIRU1.210e-1037.96Spindle pole body component n=3 Tax=Trichophyton r... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1358contigF-serratus_M_contig1358:261768..262433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1.8e-30
Seed eggNOG ortholog2880.D7G6W1
Preferred nameTUBGCP3
KEGG koko:K16570
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000922,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005824,GO:0005825,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007140,GO:0007163,GO:0007276,GO:0007338,GO:0008017,GO:0008092,GO:0008150,GO:0008275,GO:0008360,GO:0009566,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030863,GO:0030981,GO:0031023,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032501,GO:0032504,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0044703,GO:0044732,GO:0046785,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051298,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0061496,GO:0061497,GO:0065003,GO:0065007,GO:0065008,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0071957,GO:0071963,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903046,GO:1903047
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsKOG2000@1,KOG2000@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Exons2
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.4129786-CDS-F-serratus_M_contig1358:261767..2619541622929341.4129786-CDS-F-serratus_M_contig1358:261767..261954Fucus serratus maleCDSF-serratus_M_contig1358 261768..261954 +
1690962806.4940276-CDS-F-serratus_M_contig1358:261767..2619541690962806.4940276-CDS-F-serratus_M_contig1358:261767..261954Fucus serratus maleCDSF-serratus_M_contig1358 261768..261954 +
1622929341.4246757-CDS-F-serratus_M_contig1358:262263..2624331622929341.4246757-CDS-F-serratus_M_contig1358:262263..262433Fucus serratus maleCDSF-serratus_M_contig1358 262264..262433 +
1690962806.5102346-CDS-F-serratus_M_contig1358:262263..2624331690962806.5102346-CDS-F-serratus_M_contig1358:262263..262433Fucus serratus maleCDSF-serratus_M_contig1358 262264..262433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1358.2652.1prot_F-serratus_M_contig1358.2652.1Fucus serratus malepolypeptideF-serratus_M_contig1358 261768..262433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1358.2652.1

>prot_F-serratus_M_contig1358.2652.1 ID=prot_F-serratus_M_contig1358.2652.1|Name=mRNA_F-serratus_M_contig1358.2652.1|organism=Fucus serratus male|type=polypeptide|length=119bp
MRKQAAAETKTLEYGNTASLREAVDSCATLTNARLVHLIMDQYQLRSHLR
ILKKFLLHGQAKNVMLALVEALGPELDKRAQKLFKHNLTGIVDGVIKNST
IMEESENLSRIKTRMFTGN
back to top

mRNA from alignment at F-serratus_M_contig1358:261768..262433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1358.2652.1 ID=mRNA_F-serratus_M_contig1358.2652.1|Name=mRNA_F-serratus_M_contig1358.2652.1|organism=Fucus serratus male|type=mRNA|length=666bp|location=Sequence derived from alignment at F-serratus_M_contig1358:261768..262433+ (Fucus serratus male)
ATGAGAAAGCAGGCCGCCGCTGAGACAAAGACCCTCGAGTACGGGAATAC
AGCATCTCTTCGCGAGGCGGTAGACTCTTGCGCCACCCTCACCAACGCCA
GGCTGGTGCACCTCATCATGGATCAGTACCAACTTAGGAGCCACCTGAGG
ATCCTCAAGAAGTTTCTCCTACACGGTCAGGCGAAGAGTCACAGACGAGG
AGGCTCAATAATGTGGGAGTTTGGCCCTTATTCAGGTCATTGTGATCGTA
GACGCAAATGAGCTGTGTGTGTAGCCTCGAAAACGTTGCCGCCGGACTAA
TGAAAACATCGGAAACCGCCTCATTACCTTGGCTTCCAGAATCTCGCTAC
TTTGTTTTTCGGCCAATATATACCGCACGCCAAGTGTCCATTGATCCCCA
AGCCTGCAATCGTGAAAAACGGAATTATCCGAATCTTCGGACTAAGAGTG
GATGGCCTTAAATCTTCTCAATCGGGTTCATGTTTGGCGGTAGGAGACGT
CATGCTGGCCCTCGTGGAGGCGCTCGGACCTGAGCTGGATAAAAGGGCTC
AGAAGCTCTTCAAGCACAACTTGACGGGAATCGTGGATGGCGTTATCAAG
AACAGCACCATCATGGAAGAGTCCGAAAACCTGTCCAGGATCAAGACCAG
GATGTTCACCGGGAAT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1358:261768..262433+

>mRNA_F-serratus_M_contig1358.2652.1 ID=mRNA_F-serratus_M_contig1358.2652.1|Name=mRNA_F-serratus_M_contig1358.2652.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig1358:261768..262433+ (Fucus serratus male)
ATGAGAAAGCAGGCCGCCGCTGAGACAAAGACCCTCGAGTACGGGAATAC
AGCATCTCTTCGCGAGGCGGTAGACTCTTGCGCCACCCTCACCAACGCCA
GGCTGGTGCACCTCATCATGGATCAGTACCAACTTAGGAGCCACCTGAGG
ATCCTCAAGAAGTTTCTCCTACACGGTCAGGCGAAGAATGAGAAAGCAGG
CCGCCGCTGAGACAAAGACCCTCGAGTACGGGAATACAGCATCTCTTCGC
GAGGCGGTAGACTCTTGCGCCACCCTCACCAACGCCAGGCTGGTGCACCT
CATCATGGATCAGTACCAACTTAGGAGCCACCTGAGGATCCTCAAGAAGT
TTCTCCTACACGGTCAGGCGAAGAACGTCATGCTGGCCCTCGTGGAGGCG
CTCGGACCTGAGCTGGATAAAAGGGCTCAGAAGCTCTTCAAGCACAACTT
GACGGGAATCGTGGATGGCGTTATCAAGAACAGCACCATCATGGAAGAGT
CCGAAAACCTGTCCAGGATCAAGACCAGGATGTTCACCGGGAATACGTCA
TGCTGGCCCTCGTGGAGGCGCTCGGACCTGAGCTGGATAAAAGGGCTCAG
AAGCTCTTCAAGCACAACTTGACGGGAATCGTGGATGGCGTTATCAAGAA
CAGCACCATCATGGAAGAGTCCGAAAACCTGTCCAGGATCAAGACCAGGA
TGTTCACCGGGAAT
back to top