mRNA_F-serratus_M_contig1358.2648.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1358.2648.1
Unique NamemRNA_F-serratus_M_contig1358.2648.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1358.2648.1 vs. uniprot
Match: D7G6V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V9_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 4.230e-41
Identity = 91/132 (68.94%), Postives = 114/132 (86.36%), Query Frame = 1 
Query:  403 VAVREEMWAQAARDRDALETEMGMKQEAERKRIMEEANQRAGDIVEEMRAKIAAGAERDRELYAQRAALAEEGQELAREERKRVQAEKEELERQLQETIEMEDRFRKKIILKFKARENTLRQNFEAQLQEAR 798
            +AVREEMWAQAARDRDALE E+ ++ EAER R +EEA +R  +IVEE++ K+A   ERDRELYAQRAALAEEGQE+AREER ++QAEKE L RQL+ET+EM+D  R++IILKFKARE+ +R+NFEA+L+EAR
Sbjct:    1 MAVREEMWAQAARDRDALEAELSLRHEAERSRFLEEAGERDSEIVEEVKRKMAEEMERDRELYAQRAALAEEGQEIAREERNQLQAEKESLLRQLKETMEMDDASRRRIILKFKAREHAMRKNFEAELREAR 132
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1358.2648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6V9_ECTSI4.230e-4168.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1358contigF-serratus_M_contig1358:186363..189941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_012050.1
Exons6
Model size1596
Cds size927
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1358.2648.1prot_F-serratus_M_contig1358.2648.1Fucus serratus malepolypeptideF-serratus_M_contig1358 186432..189341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929340.4040923-UTR-F-serratus_M_contig1358:186362..1864311622929340.4040923-UTR-F-serratus_M_contig1358:186362..186431Fucus serratus maleUTRF-serratus_M_contig1358 186363..186431 +
1690962806.1067958-UTR-F-serratus_M_contig1358:186362..1864311690962806.1067958-UTR-F-serratus_M_contig1358:186362..186431Fucus serratus maleUTRF-serratus_M_contig1358 186363..186431 +
1622929340.5016036-UTR-F-serratus_M_contig1358:189341..1899411622929340.5016036-UTR-F-serratus_M_contig1358:189341..189941Fucus serratus maleUTRF-serratus_M_contig1358 189342..189941 +
1690962806.173711-UTR-F-serratus_M_contig1358:189341..1899411690962806.173711-UTR-F-serratus_M_contig1358:189341..189941Fucus serratus maleUTRF-serratus_M_contig1358 189342..189941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929340.4162345-CDS-F-serratus_M_contig1358:186431..1866131622929340.4162345-CDS-F-serratus_M_contig1358:186431..186613Fucus serratus maleCDSF-serratus_M_contig1358 186432..186613 +
1690962806.115667-CDS-F-serratus_M_contig1358:186431..1866131690962806.115667-CDS-F-serratus_M_contig1358:186431..186613Fucus serratus maleCDSF-serratus_M_contig1358 186432..186613 +
1622929340.429782-CDS-F-serratus_M_contig1358:187154..1873021622929340.429782-CDS-F-serratus_M_contig1358:187154..187302Fucus serratus maleCDSF-serratus_M_contig1358 187155..187302 +
1690962806.1269157-CDS-F-serratus_M_contig1358:187154..1873021690962806.1269157-CDS-F-serratus_M_contig1358:187154..187302Fucus serratus maleCDSF-serratus_M_contig1358 187155..187302 +
1622929340.4449368-CDS-F-serratus_M_contig1358:187753..1878971622929340.4449368-CDS-F-serratus_M_contig1358:187753..187897Fucus serratus maleCDSF-serratus_M_contig1358 187754..187897 +
1690962806.1348505-CDS-F-serratus_M_contig1358:187753..1878971690962806.1348505-CDS-F-serratus_M_contig1358:187753..187897Fucus serratus maleCDSF-serratus_M_contig1358 187754..187897 +
1622929340.4615536-CDS-F-serratus_M_contig1358:188261..1883751622929340.4615536-CDS-F-serratus_M_contig1358:188261..188375Fucus serratus maleCDSF-serratus_M_contig1358 188262..188375 +
1690962806.142665-CDS-F-serratus_M_contig1358:188261..1883751690962806.142665-CDS-F-serratus_M_contig1358:188261..188375Fucus serratus maleCDSF-serratus_M_contig1358 188262..188375 +
1622929340.4734004-CDS-F-serratus_M_contig1358:188642..1887341622929340.4734004-CDS-F-serratus_M_contig1358:188642..188734Fucus serratus maleCDSF-serratus_M_contig1358 188643..188734 +
1690962806.1500864-CDS-F-serratus_M_contig1358:188642..1887341690962806.1500864-CDS-F-serratus_M_contig1358:188642..188734Fucus serratus maleCDSF-serratus_M_contig1358 188643..188734 +
1622929340.4884562-CDS-F-serratus_M_contig1358:189094..1893411622929340.4884562-CDS-F-serratus_M_contig1358:189094..189341Fucus serratus maleCDSF-serratus_M_contig1358 189095..189341 +
1690962806.1579523-CDS-F-serratus_M_contig1358:189094..1893411690962806.1579523-CDS-F-serratus_M_contig1358:189094..189341Fucus serratus maleCDSF-serratus_M_contig1358 189095..189341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1358.2648.1

>prot_F-serratus_M_contig1358.2648.1 ID=prot_F-serratus_M_contig1358.2648.1|Name=mRNA_F-serratus_M_contig1358.2648.1|organism=Fucus serratus male|type=polypeptide|length=309bp
MVKAYGIAACVLIVWVPACGSNNQAAPPSRSLLGRKISKADQIRVQATRL
NRLEERIQKLSEEGAFLTERTLQHREMRFKGRQDLRDKIEELNSKLQNQR
DDTQKNFEVKLVAVREEMWAQAARDRDALETEMGMKQEAERKRIMEEANQ
RAGDIVEEMRAKIAAGAERDRELYAQRAALAEEGQELAREERKRVQAEKE
ELERQLQETIEMEDRFRKKIILKFKARENTLRQNFEAQLQEARAKTMGGT
AGRRPRSTKADTSSASSSSSKLEGSQRAAMKSSTPGAFSSGAVGGLSASG
SVAATPQR*
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mRNA from alignment at F-serratus_M_contig1358:186363..189941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1358.2648.1 ID=mRNA_F-serratus_M_contig1358.2648.1|Name=mRNA_F-serratus_M_contig1358.2648.1|organism=Fucus serratus male|type=mRNA|length=3579bp|location=Sequence derived from alignment at F-serratus_M_contig1358:186363..189941+ (Fucus serratus male)
TGTTATGCTTTAGGTATTGTGGCAGAGGTGGCAGATAATTGAGAAGTTGG
ACTCTGCTAAACTTACGCAATGGTCAAAGCGTACGGCATCGCCGCATGTG
TACTAATTGTGTGGGTGCCAGCTTGCGGCAGCAACAACCAGGCGGCTCCC
CCATCGAGATCGTTGCTTGGACGGAAGATCAGCAAGGCGGACCAGATAAG
GGTGCAGGCAACGAGGCTTAACCGTCTGGAGGAGCGCATACAGAAGCTGA
GGTACGATTGGGCGTACCAAACGCGAAGTAAGCCTGTCTTTGCCCGGCTG
ATGTCAATCAGCGCATACTCTCTACCCATTCTGTTGGTAAGGTTTGCATC
TCCCTTGTGGTTGATGAGGGGTAAAGTGTCCGTTTGAATCGAGAGTCGAT
AACCCCTTCCCTGCCCCGAGCGTCAGTGAAAGCCGTTTTTCAGGCCAAGG
CGGGGCTAGTCCTCGCTCCTAGCACCCGTTGAGACCTTTATTACCCGAGA
AATATCCACCACCACGTTTTTATACCGTCGACGAACCGTTATTTTCATCA
TATACCCCCGCTGGAGAGTGCCCGATCATACAGGTTTCTCATAAAGGCGA
AGACACGATCTTGATGTCTTTCCATCGTCGTTTTTTCGTACCGAACGGAA
GCCCCAAATATTACAAAACTAATGACTTGTACTACAGCATCGTACTGTAT
TAATTCAGCAGCATGGAATAGAGCGCCTTTCACTCTAACTCGTATGGAAT
TCATCTCACACCTCAAACTTGGTTGGACGCGACCGTCTGCAGCGAGGAGG
GCGCGTTTTTGACCGAGAGGACGCTGCAACACCGCGAGATGCGATTCAAA
GGTAGACAAGACCTGAGAGATAAGATAGAGGAACTCAACTCCAAGCTACA
AAATCAGCGAGACGACACGCAGAAGAATTTTGAAGTCAAGGTTAGGAGAG
CTGGGTTCACTCACGAGGAGCAGTATGTTCATTAGACCCGGTGCTGGCCA
TCAGTCAAGTCTCAGGTGCACCAGGGGGTAGTTGCTCCCTTGAGGATATA
CGTCTCATCGTATTTTGCATGCCGTCGTGGTCGTGGGGGCGTTTCCCGTC
ACATCATCAGGAAATTAGGTTTCTACAGTTACAGTAGTACTGGTACTTGT
TAGACTCATCCTTTTAAATAATGTCATCTCCCCAAATATACAATGCTGCA
CCAGACGGGCTTGCATCGATGTAAACCCGTGGGACGTCATATTCGAGATT
TCACCCCCATTTACATGTAAGTGCAGACAAATCGTAGCGACGCGATATCC
TATGTATCTAAAGCTGGAACTTCACGCCCATCCTCTTGAACAAAAACAAT
AAAAGTGTATAAAGCCCTCTAATAAAACCGTGTGCATGCAGCTGGTGGCC
GTTCGAGAGGAGATGTGGGCACAGGCCGCAAGGGATCGGGATGCACTTGA
AACTGAGATGGGGATGAAACAAGAGGCGGAACGAAAAAGGATAATGGAGG
AGGCCAACCAACGCGCCGGAGATATAGTTGAAGAGGTAATTGCTCTTTGT
CCATTGAATTGTTCCCATGAATAAACAGTTCAACCCGGAATGTGGAACGA
AATATGAGCACGTCGGTAAGCACGTGGGCGTGATGCATACCTGTTGACAG
ACAGCACGTACCTACCGGTAACCTTTATATAAGTAACTCGCGGTTATACA
ACAGGAGCGGAAATCTGGTCAACGGTAGACTGCCGGTAGCCGCAGCTCCA
TCTCCAGCTCTAATGTGTTTTTAGGATGGCTATCAGATGGGATTGTTCGC
GCGCGTCCGATGCCGGTCGGGCAGGACACGAGGTTATACGTTCGGCTGTC
ACGGTGACGTTTGCGGCCTCTCGGTGGATTCATGAATGTCATGCACCAGA
TGAGGGCCAAGATTGCGGCAGGGGCCGAGCGGGACAGGGAGTTGTATGCA
CAGCGGGCGGCATTAGCAGAAGAGGGGCAAGAACTCGCCCGAGAGGAGCG
AAAACGAGTGCAGGTATGCGCGTGTGAGGAGGGACAGCTTGGTGCTTAGT
CTCCATTTATCCTCTTGCGCGAAGATTTGACCCGCGTTCATCGTGTCGTC
TCCGAACCAATATGTCAGGTCGAGGCTGCTTTCGTTATTGCCCGCTAGGT
AACAGAGAGCTAAGCCGATGTGCCCGTAAAATAGACCGGTTGTTCTGCGG
CAATGCTCCCGGCGTTCGATTCTTGTGCTTGTTTTACGACATGGCTTCTT
GTTCTGTTCAACCGATGTAAACAAGAACAGGCCGAGAAAGAGGAGCTGGA
GAGACAGCTTCAGGAGACTATCGAGATGGAGGACAGATTTCGCAAGAAAA
TTATCCTGAAGTTCAAGGCCAGGTATTGCCGCTTGTATGCTTATGGCTCA
AAATCCCACCACTTTTAAGTATTATTGATCGAAACAGAAGGTCTAGATGC
GTTCAGATTTTATTTAAACACGACTTTGTCGGGTGGTCCCCGGCACCCGG
GTCCCTACACTGACTTCCCATTAATACATGTATGATGACCTCGGGGATAA
TAAAACAGTCAAAGCTGCATTCGTTCATTTTGAATGTATGTCCCTTATGA
GTTATGCATGCGCTGTGGGTGGAGTTAACATCCTCTGTGTCATTCGCGAT
GTGTCACTTGGTTATTTAGCTCACGTACGCACCCTGAACAAGGGTTTCCA
CCCGTTGGCTACCTCTACAACACCCTTAACAGGGAAAACACCCTACGACA
AAACTTTGAAGCCCAGCTACAGGAAGCCAGGGCGAAGACTATGGGAGGGA
CTGCTGGGAGACGCCCACGATCAACGAAAGCCGACACCTCGTCGGCCTCG
TCTAGCAGTTCCAAGCTGGAGGGCTCTCAGCGGGCTGCGATGAAGTCATC
CACGCCCGGAGCGTTCTCTTCCGGCGCAGTTGGTGGCCTCTCCGCGAGTG
GTAGCGTGGCAGCGACACCACAGCGTTGACGTTGCCTTGAGAAGGAGGCA
GTTCGAGATATATTAGAGGTGCTTCTTTTTTTTAGGTGCGCGCTTAGACT
AGTGTGGCGGTTCCCGCTCGATTGCGTGAGCTTCACTTGCTGCTTTGGCG
TTGATTGATGTAATTTTTTTCGGCGTAGTGCTGCAAGTCTCACCGACATC
CCTGGAGTCACGGTTCATGTCATTGCCGTACTGTATGCAAACCCAAACAT
ATGCCCAAGAGATTGCAAAAAGTCATCGCCTCTTTTTTCGCTCTGATCCT
GAGGGTAGTGTCGTGTCTAGAAATCTGTTGACTTTTTAGATTGGAACGTC
TGTGGGCGCGTACCTTGGGCTTTTCAAAATACGCGCAATAAGGCGTTGAC
ATTGCATACCGTACCGATACAGTATAGCTTTACGCCACATCCGATTGCCG
TGTTGCGCAGTCGGCAACTGTTCGTTGCTTATGATGATAGTCTGGCGTAT
GTGTGCTTCGCGTTTTGATGTATTTGACTTGATCCTCGTGTTTCGCGCCG
CATAAACTGTGGTGAATACAATTGAACAATCACCACCCCACGAAGGAAAG
ATGGTCCATACATCTGGAGGATGGCGCCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1358:186363..189941+

>mRNA_F-serratus_M_contig1358.2648.1 ID=mRNA_F-serratus_M_contig1358.2648.1|Name=mRNA_F-serratus_M_contig1358.2648.1|organism=Fucus serratus male|type=CDS|length=1854bp|location=Sequence derived from alignment at F-serratus_M_contig1358:186363..189941+ (Fucus serratus male)
ATGGTCAAAGCGTACGGCATCGCCGCATGTGTACTAATTGTGTGGGTGCC
AGCTTGCGGCAGCAACAACCAGGCGGCTCCCCCATCGAGATCGTTGCTTG
GACGGAAGATCAGCAAGGCGGACCAGATAAGGGTGCAGGCAACGAGGCTT
AACCGTCTGGAGGAGCGCATACAGAAGCTGAGATGGTCAAAGCGTACGGC
ATCGCCGCATGTGTACTAATTGTGTGGGTGCCAGCTTGCGGCAGCAACAA
CCAGGCGGCTCCCCCATCGAGATCGTTGCTTGGACGGAAGATCAGCAAGG
CGGACCAGATAAGGGTGCAGGCAACGAGGCTTAACCGTCTGGAGGAGCGC
ATACAGAAGCTGAGCGAGGAGGGCGCGTTTTTGACCGAGAGGACGCTGCA
ACACCGCGAGATGCGATTCAAAGGTAGACAAGACCTGAGAGATAAGATAG
AGGAACTCAACTCCAAGCTACAAAATCAGCGAGACGACACGCAGAAGAAT
TTTGAAGTCAAGCGAGGAGGGCGCGTTTTTGACCGAGAGGACGCTGCAAC
ACCGCGAGATGCGATTCAAAGGTAGACAAGACCTGAGAGATAAGATAGAG
GAACTCAACTCCAAGCTACAAAATCAGCGAGACGACACGCAGAAGAATTT
TGAAGTCAAGCTGGTGGCCGTTCGAGAGGAGATGTGGGCACAGGCCGCAA
GGGATCGGGATGCACTTGAAACTGAGATGGGGATGAAACAAGAGGCGGAA
CGAAAAAGGATAATGGAGGAGGCCAACCAACGCGCCGGAGATATAGTTGA
AGAGCTGGTGGCCGTTCGAGAGGAGATGTGGGCACAGGCCGCAAGGGATC
GGGATGCACTTGAAACTGAGATGGGGATGAAACAAGAGGCGGAACGAAAA
AGGATAATGGAGGAGGCCAACCAACGCGCCGGAGATATAGTTGAAGAGAT
GAGGGCCAAGATTGCGGCAGGGGCCGAGCGGGACAGGGAGTTGTATGCAC
AGCGGGCGGCATTAGCAGAAGAGGGGCAAGAACTCGCCCGAGAGGAGCGA
AAACGAGTGCAGATGAGGGCCAAGATTGCGGCAGGGGCCGAGCGGGACAG
GGAGTTGTATGCACAGCGGGCGGCATTAGCAGAAGAGGGGCAAGAACTCG
CCCGAGAGGAGCGAAAACGAGTGCAGGCCGAGAAAGAGGAGCTGGAGAGA
CAGCTTCAGGAGACTATCGAGATGGAGGACAGATTTCGCAAGAAAATTAT
CCTGAAGTTCAAGGCCAGGCCGAGAAAGAGGAGCTGGAGAGACAGCTTCA
GGAGACTATCGAGATGGAGGACAGATTTCGCAAGAAAATTATCCTGAAGT
TCAAGGCCAGGGAAAACACCCTACGACAAAACTTTGAAGCCCAGCTACAG
GAAGCCAGGGCGAAGACTATGGGAGGGACTGCTGGGAGACGCCCACGATC
AACGAAAGCCGACACCTCGTCGGCCTCGTCTAGCAGTTCCAAGCTGGAGG
GCTCTCAGCGGGCTGCGATGAAGTCATCCACGCCCGGAGCGTTCTCTTCC
GGCGCAGTTGGTGGCCTCTCCGCGAGTGGTAGCGTGGCAGCGACACCACA
GCGTTGAGGAAAACACCCTACGACAAAACTTTGAAGCCCAGCTACAGGAA
GCCAGGGCGAAGACTATGGGAGGGACTGCTGGGAGACGCCCACGATCAAC
GAAAGCCGACACCTCGTCGGCCTCGTCTAGCAGTTCCAAGCTGGAGGGCT
CTCAGCGGGCTGCGATGAAGTCATCCACGCCCGGAGCGTTCTCTTCCGGC
GCAGTTGGTGGCCTCTCCGCGAGTGGTAGCGTGGCAGCGACACCACAGCG
TTGA
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