mRNA_F-serratus_M_contig1357.2642.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1357.2642.1
Unique NamemRNA_F-serratus_M_contig1357.2642.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1357.2642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1357contigF-serratus_M_contig1357:179446..179763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929338.4177988-CDS-F-serratus_M_contig1357:179445..1797631622929338.4177988-CDS-F-serratus_M_contig1357:179445..179763Fucus serratus maleCDSF-serratus_M_contig1357 179446..179763 +
1690962805.2009368-CDS-F-serratus_M_contig1357:179445..1797631690962805.2009368-CDS-F-serratus_M_contig1357:179445..179763Fucus serratus maleCDSF-serratus_M_contig1357 179446..179763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1357.2642.1prot_F-serratus_M_contig1357.2642.1Fucus serratus malepolypeptideF-serratus_M_contig1357 179446..179763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1357.2642.1

>prot_F-serratus_M_contig1357.2642.1 ID=prot_F-serratus_M_contig1357.2642.1|Name=mRNA_F-serratus_M_contig1357.2642.1|organism=Fucus serratus male|type=polypeptide|length=106bp
GGRGVIRPEGLSVKRGHRGVARGTGRWQSQQPHAEKSRSPEKRARTPDQS
GRRGEKKQSPGWRTGGLRWRFWTRSLKNRRMMRRMTCCPELAKGQGEKGG
GQWESG
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mRNA from alignment at F-serratus_M_contig1357:179446..179763+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1357.2642.1 ID=mRNA_F-serratus_M_contig1357.2642.1|Name=mRNA_F-serratus_M_contig1357.2642.1|organism=Fucus serratus male|type=mRNA|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig1357:179446..179763+ (Fucus serratus male)
GGTGGGCGGGGGGTGATCCGCCCAGAGGGACTCTCGGTGAAACGGGGGCA
TCGGGGCGTAGCCCGCGGAACCGGCCGTTGGCAGAGCCAGCAGCCGCACG
CAGAGAAGTCGAGGTCACCGGAGAAGAGGGCTCGGACGCCCGACCAGAGC
GGGCGGCGGGGCGAAAAGAAGCAGTCCCCAGGTTGGAGGACTGGAGGCCT
TCGTTGGCGATTTTGGACTCGGTCTTTGAAGAACAGGAGGATGATGCGGC
GGATGACATGCTGTCCGGAGCTCGCGAAGGGCCAAGGGGAGAAAGGGGGA
GGGCAGTGGGAGAGCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1357:179446..179763+

>mRNA_F-serratus_M_contig1357.2642.1 ID=mRNA_F-serratus_M_contig1357.2642.1|Name=mRNA_F-serratus_M_contig1357.2642.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig1357:179446..179763+ (Fucus serratus male)
GGTGGGCGGGGGGTGATCCGCCCAGAGGGACTCTCGGTGAAACGGGGGCA
TCGGGGCGTAGCCCGCGGAACCGGCCGTTGGCAGAGCCAGCAGCCGCACG
CAGAGAAGTCGAGGTCACCGGAGAAGAGGGCTCGGACGCCCGACCAGAGC
GGGCGGCGGGGCGAAAAGAAGCAGTCCCCAGGTTGGAGGACTGGAGGCCT
TCGTTGGCGATTTTGGACTCGGTCTTTGAAGAACAGGAGGATGATGCGGC
GGATGACATGCTGTCCGGAGCTCGCGAAGGGCCAAGGGGAGAAAGGGGGA
GGGCAGTGGGAGAGCGGCGGTGGGCGGGGGGTGATCCGCCCAGAGGGACT
CTCGGTGAAACGGGGGCATCGGGGCGTAGCCCGCGGAACCGGCCGTTGGC
AGAGCCAGCAGCCGCACGCAGAGAAGTCGAGGTCACCGGAGAAGAGGGCT
CGGACGCCCGACCAGAGCGGGCGGCGGGGCGAAAAGAAGCAGTCCCCAGG
TTGGAGGACTGGAGGCCTTCGTTGGCGATTTTGGACTCGGTCTTTGAAGA
ACAGGAGGATGATGCGGCGGATGACATGCTGTCCGGAGCTCGCGAAGGGC
CAAGGGGAGAAAGGGGGAGGGCAGTGGGAGAGCGGC
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