mRNA_F-serratus_M_contig1357.2641.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1357.2641.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 117 bits (293), Expect = 9.420e-24 Identity = 98/255 (38.43%), Postives = 119/255 (46.67%), Query Frame = 2
Query: 2180 LDASCIVGAADAITTLAELGADLTRTSRNDLIPLELAVNGDHLDAVNALLAAGVDPNQE----PGGKRVLESAILSMRSDIVATLLLHGADVNKEVAGDMTGLIVAVENEDAGVVNVLLGAGADVNNGVSVDGMSALHYACTLRSTEIMLALLSHGASIGARDENGMSPLHHAAYSCVHMDSGTDRVGVLLRAGADETARDCDGLTPAEFVRSTFFDETY---QDSLAAVTVALERAPADRAWRRRGMVLLCRSF 2923
L S G + TL GA PL LAV HL V ALLAA D + VL+ A + ++ +L HG DVN+ G T L VA N ++VL+ AGA V D L AC+ E LAL HGA+I ARD G +PL AA T V +LLR GADETA + DG T AE V + L V LE APADRAWRRRG+++LCR+F
Sbjct: 91 LHVSASQGQEVRVATLLAEGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVHYRIWNRSYSVLDFAAQKGDACVLRAILQHGVDVNRRTDG-YTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLD-ACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGV-TAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAF 342
BLAST of mRNA_F-serratus_M_contig1357.2641.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 110 bits (275), Expect = 1.250e-21 Identity = 93/248 (37.50%), Postives = 114/248 (45.97%), Query Frame = 2
Query: 2201 GAADAITTLAELGADLTRTSRNDLIPLELAVNGDHLDAVNALLAAGVDPNQE----PGGKRVLESAILSMRSDIVATLLLHGADVNKEVAGDMTGLIVAVENEDAGVVNVLLGAGADVNNGVSVDGMSALHYACTLRSTEIMLALLSHGASIGARDENGMSPLHHAAYSCVHMDSGTDRVGVLLRAGADETARDCDGLTPAEFVRSTFFDETY---QDSLAAVTVALERAPADRAWRRRGMVLLCRSF 2923
G + TL GA PL LAV HL V ALLAA D + VL+ A + ++ +L HG DVN+ G T L VA N ++VL+ AGA V D L AC E LAL HG++I ARD G +PL AA T V +LLR GADETA + DG T AE V + + V LE AP DRAWRRRG ++LCR+F
Sbjct: 49 GQEGRVATLLAGGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVRYRIWNRSYSVLDLAAQKGDACVLRAILQHGVDVNRRTDG-YTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLD-ACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGRQGV-TAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAF 293
BLAST of mRNA_F-serratus_M_contig1357.2641.1 vs. uniprot
Match: D7G0W2_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W2_ECTSI) HSP 1 Score: 103 bits (256), Expect = 2.290e-20 Identity = 84/278 (30.22%), Postives = 129/278 (46.40%), Query Frame = 2
Query: 2327 LAAGVDPNQEPG--GKRVLESAILSMRSDIVATLLLHGADVNKEVAGDMTGLIVAVENEDAGVVNVLLGAGADVNNGVSVDGMSA-LHYACTLRSTEIML-ALLSHGASIGARDE-NGMSPLHHAAYSCVHMDSGTDRVGVLLRAGADETARDCDGLTPAEFVRSTFF-------DETYQDSLAAVTVALERAPADRAWRRRGMVLLCRSFVEG-------------KAKKPEPLVET-------GAQEEGSGNFGGLMSKLFALEEEGLFRTVVGFL 3064
+AAG D N G G L+ ++ S D+ +L GA + + T L A N +A +++L+GAGA++ ++ D + LH A ++ AL HGA + A++ +G +PLH AA +C +S + V LL+AGADET DC G TP + + + + +V V + A RAW RR ++CR+ + +AKK T GA + + NF M L L+E+GLFR +V FL
Sbjct: 1 MAAGADVNVRDGSNGYSPLDCSVRSDGMDLTRQVLQRGAIATESSSDGCTALHWAGWNMNASAIDLLVGAGANLEAKIAADAEATPLHLAARQAGNAAVIEALARHGADVHAQETPSGNTPLHVAAQNCT-TESSWETVDALLKAGADETRLDCQGQTPLDVLEARIAAGDLMGASVNEAERTRSVLVNAPKDRAQRAWSRRSFFVMCRAHPDRVRLTVVDDTTTSPRAKKTMAAAATAVGSGRRGANRDSADNFQRAMRSLIRLKEDGLFRKIVAFL 277
BLAST of mRNA_F-serratus_M_contig1357.2641.1 vs. uniprot
Match: D8LP53_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI) HSP 1 Score: 102 bits (255), Expect = 5.110e-19 Identity = 95/273 (34.80%), Postives = 126/273 (46.15%), Query Frame = 2
Query: 2288 AVNGDHLDAVNALLAAGVD--------PNQE---PGGKRVLESAILSMRSDIVATLLLHGADVNKEVAGDMTGLIVAVENEDAGVVNVLLGAGADVNNGVSVDGMSALHYACTLRST-EIMLALLSHGASIGARDEN-GMSPLHHAAYSCVHMDSGTDRVGVLLRAGADETARDCDGLTPAEFVRSTFFDETYQDSLAAVTVALERAPADRAWRRRG-MVLLCRSFVEGKAKKPEPLVETGAQEEGSGNFGGLMSKLFALEEEGLFRTVVGFL 3064
A +L V AL GVD P+ PG L +A +D+V LL + ++ MT LI +V V LL AGA + G S+L YA S+ ++ L LL +GA + R G S LH+A C + D+ V +LLR GADET D G TP + F ++ V L APADR WRRRG +V+LC KK + T EEG GG+ + L A+ +EG+ RTVVGFL
Sbjct: 201 AAESGNLPVVKALSTKGVDLDGTAEYHPSHSDIIPGQATALHAAAFGGHNDVVNFLLENSVRIDAVDGNMMTPLICSVSENHLCVSATLLEAGAAAS-AEDQTGTSSLSYAAASSSSVDMALLLLRYGADVNTRCYLFGSSVLHNA---CTNRDNTEALVDLLLRWGADETVVDSSGRTPMNHLTEDRFTRHSAETKDKVRKLLVNAPADRTWRRRGWLVMLCERERRKTEKKGCKVART---EEGI-VLGGMAAWLLAVTDEGVLRTVVGFL 465
BLAST of mRNA_F-serratus_M_contig1357.2641.1 vs. uniprot
Match: A0A6H5JU40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU40_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.130e-17 Identity = 100/335 (29.85%), Postives = 144/335 (42.99%), Query Frame = 2
Query: 2153 HGLAQEWTPLDASCIVGAADAITTLAELGADLTRTSRNDLIPLELAVNGDHLDAVNALLAAGVDPNQEPGGKRVLESAILSMRS---DIVATLLLHGADVNKEVAGDMTGLIVAVEN--EDAGVVNVLLGAGADVNNGVSVDGM--SALHYACTLR-STEIMLALLSHGASIGARDENGMSPLHHAAYSCVHMDSGTDRVGVLLRAGADETARDCDGLTPAEFVRSTFFDETYQDSLAAVTVALERAPADRAWRRRGMVLLCRSFVEGKAKKP-----------------------EPLVETGAQEEGSGNFGGLMSKLFALEEEGLFRTVVGFL 3064
+G A +W P+ + + +A+ L GAD PL A + ++ L A+LS + D+ LL HGADVN ++ +A+ VV +LL AGA V+ G+ + LH AC S +++ LL HGA++ +D G S LH A V S V +LLR GADET + D TPA+ R +Q++ V L APADRAWRRRG VLLC + + K P E + + GS +F LM++LF +G+FR +V +L
Sbjct: 107 NGGALKWRPIHFATEANSPEAVLALVRHGADPHAEDSLGRPPLCCAADRGNMXXXXXXXXXXXXXXXXHEVCPPLLFAVLSRSNNSEDMTRALLQHGADVN-----ELDDYEIAINEAVRCGNVVKLLLKAGALVDGHNDFHGLVLAPLHAACNFSLSCDVVKVLLGHGANVNLQDSEGTSALHLTA---VRFSSRL--VDLLLRHGADETINNGDSSTPADCAR---LKAGHQEASRPVLRLLGGAPADRAWRRRGRVLLCSTPPQQKRLGPGETRTKMTRVTAGDGAAARGGTSEVGSDAHSNSNGSSDFSSLMARLFD-RPQGVFRKIVCYL 427
BLAST of mRNA_F-serratus_M_contig1357.2641.1 vs. uniprot
Match: D8LCR2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR2_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 2.280e-17 Identity = 91/275 (33.09%), Postives = 124/275 (45.09%), Query Frame = 2
Query: 2291 VNGDHLDAVNALLAAGVDPNQ--EPGGKRVLESAILSMRSDIVATLLL--HGADVNKEVAGDMTGLIVAVENEDAGVVNVLLGAGADV------------NNGVSVDGMSALHYACTLRSTEIMLALLSHG-ASIGARDENGMSPLHHAAYSCVHMDSGTDRVGVLLRAGADETARDCDGLTPAEFVRSTFFDETYQDSLAAVTVALERAPADRAWRRRGMVLLCRSFVEGKAKKPEPLVETGAQEEGSGNFGGLMSKLFALEEEGLFRTVVGFL 3064
V +H+ ALL AG PN G V S + R + T L GADV + L AV + + VV+ L+ GADV + G + GM+ LH A + ML LL G A+ A+DE+G SPLH + + S +LLR+GADETA D D TPA+ + S+ + L A APADRAWRRRG +++ R+ G Q E ++ +L L+ E LFR +V FL
Sbjct: 133 VKMEHVGVAKALLKAGAGPNVLFTTGDPTVRFSPLYLARRNAAMTSALVGMGADVTSVDNIGYSALHWAVRDGRSDVVDALIEVGADVEARTSRMISYYSDGGHCMKGMTPLHEAAYQGNYPGMLVLLQKGRANANAQDEHGHSPLHILCMN-PQVCSAAACSDILLRSGADETATDEDRHTPADIMASSEGHNGWLQQLLA------NAPADRAWRRRGTLVMLRA--------------QGVQAENEATTDAVLPRLVDLQNEALFRHIVRFL 386
BLAST of mRNA_F-serratus_M_contig1357.2641.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 9.500e-17 Identity = 76/222 (34.23%), Postives = 102/222 (45.95%), Query Frame = 2
Query: 2276 PLELAVNGDHLDAVNALLAAGVDP--NQEPGGKRVLESAILSMRSDIVATLLLHGADVNKEVAGDMTGLIVAVENEDAGVVNVLLGAGADVNNGVSVDGMSALHYACTLRSTEIMLALLSHGASIGARDENGMSPLHHAAYSCVHMDSGTDRVGVLLRAGADETARDCDGLTPAEFV-RSTFFDETYQDSLAAVTVALERAPADRAWRRRGMVLLCRSFVEG 2932
PL L A ALL AG D Q G HG DVN +V +T L VA + A ++VL AGA++ +G + LH A +ALL HGAS+G ++ +PLH A + + V +LLR GADETA +G T A+ V T ++ + + V L RAPADRAWRRRG ++L R+ G
Sbjct: 493 PLHLVAMAGRAAAAQALLDAGADVALRQNGVGLSSXXXXXXXXXXXXXXXXXXHGGDVNAKVNNGITALRVASAFDKAPAIDVLTEAGANIE--AQANGSTPLHVASQEGRLAAGIALLRHGASVGKKNAAAQTPLHLVAAKAGSPGTA-EMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPG 711
BLAST of mRNA_F-serratus_M_contig1357.2641.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 3.030e-16 Identity = 75/224 (33.48%), Postives = 112/224 (50.00%), Query Frame = 2
Query: 2405 DIVATLLLHGADVNKEVAGDMTGLIVAVENEDAGVVNVLLGAGADVNNGVSVDGMSALHYACTLRS-TEI--MLALLSHGASIGARDENGMSPLHHAAYSCVHMDSGTDRVGVLLRAGADETARDCDGLTPAEFVRSTFFDET-YQDSLAAVTVALERAPADRAWRRRGMVLLCRSFVEGKAKKPEPLVETGAQEEGSGNFGGLMSKLFALEEEGLFRTVVGFL 3064
D + TL+ HGADV+ G + L A N ++VLL AGA+ + +S G + LH A R+ TE + LL HGA + A+ G S L + A + + V +LLR GADET +G+ A+ + +E + V L APADRAWRRR ++LCR+ +P+ + + S L +++ L EEG+FRT+V F+
Sbjct: 174 DFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARS-MSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVA-TRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRA-------RPDKMQLS------SDRIARLEARVLGLVEEGIFRTIVRFI 382
BLAST of mRNA_F-serratus_M_contig1357.2641.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 4.470e-16 Identity = 99/320 (30.94%), Postives = 143/320 (44.69%), Query Frame = 2
Query: 2177 PLDASCIVGAADAITTL----AELGADLTRTSRNDLIPLELAVNGDHLDAVNALLAAGVDPN-QEPGGKRVLESAILSMRSDIVATLLLHGADVNKEVAGDMTGLIVAVENED-AG-VVNVLLGAGADVNNGVSVDGMSALHYACTLRSTEIMLALLSHGASIGAR-DENGMSPLHHAAYSCVHMDSG-TDRVGVLLRAGADETARDCDGLTPAEFVRSTFFDETY--QDSLAAVTVALERAPADRAWRRRGMVLLCRS--------FVEGKAKKPEPLVET-----GAQEEGSGNFGGLMSKLFALEEEGLFRTVVGFL 3064
PL A+ + ++ L A++ L +T PL LAV HL V LL AG D + ++ V+ + T L A+ D AG V++L+ A AD SV G + LH A + ALL + AS+ R D G +PLH A CV G + +LLR GADETAR+ G TP + + +T D + D + + L RAP DR WRRRG +++ RS +G + L + GA+ + +GN G++ L LE E +FR+V+GFL
Sbjct: 175 PLQAAALFAEEGVVSALLLAKADVNVGLGKTMYET--PLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTAILFSDRAGPAVHMLVKARADTEL-KSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRA---CVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSRTIVVAHRCAKGASDSGLSLCQARRNGKGARIDVAGNSSGVVELLTELEPEAVFRSVLGFL 488
BLAST of mRNA_F-serratus_M_contig1357.2641.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 8.310e-14 Identity = 95/289 (32.87%), Postives = 115/289 (39.79%), Query Frame = 2
Query: 2219 TTLAELGADLT-RTSRNDLIPLELAVNGDHLDAVNALLAAGVDPNQEPG----------------------------------GKRVLESAILSMRSDIVAT----------LLLHGADVNKEV--AGDMTGLIVAVENEDAGVVNVLLGAGADVNNGVSVDGM----SALHYACTLRSTEIMLALLSHGASIGARDENGMSPLHHAAYSCVHMDSGTDRVGVLLRAGADETARDCDGLTPAE-FVRSTFFDETYQDSLAAVTVALERAPADRAWRRRGMVLLCRSFVE 2929
TTL GAD+ R PL AV V LLAAG PN G G V+ S + VAT L HG D + + A T L A + A V VLL AGAD + S+ G + L A S E + LL +GA D+NG PLH AA+ + V +LLR GA ETA + G TPAE F R + A V L RAPADRAWRRRG V++ R+ E
Sbjct: 74 TTLISAGADVNDRDPAEGCYPLHAAVRRGCDRVVADLLAAGAAPNNTDGXXXXXXXXXXXXXXXXXXXXXXXXXAEFTFESCAGYVVIASEVFPNAEINVATQLGHVGVIKAFLEHGVDASSQACPASGWTALHQAALDNQAEAVEVLLEAGADADV-ESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAAHE--QTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSE 359 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1357.2641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1357.2641.1 >prot_F-serratus_M_contig1357.2641.1 ID=prot_F-serratus_M_contig1357.2641.1|Name=mRNA_F-serratus_M_contig1357.2641.1|organism=Fucus serratus male|type=polypeptide|length=997bp MRVLLQHHARGASAECDHFSGEIDNALRMVMGSLNNTVDVIDFLVNEAGAback to top mRNA from alignment at F-serratus_M_contig1357:171526..178751- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1357.2641.1 ID=mRNA_F-serratus_M_contig1357.2641.1|Name=mRNA_F-serratus_M_contig1357.2641.1|organism=Fucus serratus male|type=mRNA|length=7226bp|location=Sequence derived from alignment at F-serratus_M_contig1357:171526..178751- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1357:171526..178751- >mRNA_F-serratus_M_contig1357.2641.1 ID=mRNA_F-serratus_M_contig1357.2641.1|Name=mRNA_F-serratus_M_contig1357.2641.1|organism=Fucus serratus male|type=CDS|length=5982bp|location=Sequence derived from alignment at F-serratus_M_contig1357:171526..178751- (Fucus serratus male)back to top |