mRNA_F-serratus_M_contig1354.2636.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1354.2636.1
Unique NamemRNA_F-serratus_M_contig1354.2636.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1354.2636.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 99.4 bits (246), Expect = 3.570e-22
Identity = 49/106 (46.23%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    7 EMVGMVKNFVYNQVARPKDKLVIGTKLLYKRKIGQDGKVEKYKCRLVAQGFWQVKGVHYTEKYSPTPLTAPIRMLLAMSVAKDGELRHFDAEQAFLKADIDEEIYI 324
            EM+  VK  ++++V  PK++ V+G+K +++ K G +GK+EKYK RLVAQGF QVKG+ YTE ++P      IR LL+++   D E+   D + AFL  D+DEEIY+
Sbjct:   16 EMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYM 121
[Close]
BLAST of mRNA_F-serratus_M_contig1354.2636.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 99.0 bits (245), Expect = 6.990e-22
Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:   34 VYNQVARPKDKLVIGTKLLYKRKIGQDGKVEKYKCRLVAQGFWQVKGVHYTEKYSPTPLTAPIRMLLAMSVAKDGELRHFDAEQAFLKADIDEEIYI 324
            V+ +V RP+D+ +IG+K ++K K G DG+VEKYK RLVAQGF QV+G+ Y E ++P   +  IR+LLA++   D E+   D + AFL  +++EEIY+
Sbjct: 1026 VFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYM 1122
[Close]
BLAST of mRNA_F-serratus_M_contig1354.2636.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI)

HSP 1 Score: 92.0 bits (227), Expect = 1.870e-19
Identity = 45/106 (42.45%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:    7 EMVGMVKNFVYNQVARPKDKLVIGTKLLYKRKIGQDGKVEKYKCRLVAQGFWQVKGVHYTEKYSPTPLTAPIRMLLAMSVAKDGELRHFDAEQAFLKADIDEEIYI 324
            E++   K   Y++V RP+++ V+G K +++ K G DG VE+YK RLVAQGF QV+G+ Y+E ++P    A IR +L ++   D E+   D + AFL  D+DEEI++
Sbjct:  952 ELLAFAKAEPYDEVERPQNRKVVGCKWVFRLKRGADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIRTVLTLAALFDLEIDQMDVKSAFLNGDLDEEIFM 1057
[Close]
BLAST of mRNA_F-serratus_M_contig1354.2636.1 vs. uniprot
Match: A0A1X1QSJ2_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cycloclasticus sp. symbiont of Poecilosclerida sp. M TaxID=1840537 RepID=A0A1X1QSJ2_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 1.040e-18
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    1 KTEMVGMVKNFVYNQVARPKDKLVIGTKLLYKRKIGQDGKVEKYKCRLVAQGFWQVKGVHYTEKYSPTPLTAPIRMLLAMSVAKDGELRHFDAEQAFLKADIDEEIYI 324
            K EM  +  N V+  V  PKD+  +G+K ++K K  +DG VE YK RLVAQGF QVKG  Y E + P      +R L+AMSV +  +L   D   AFL   ++EE+++
Sbjct:    2 KAEMRLLQDNDVWELVELPKDRKNVGSKWVFKVKTNEDGDVEHYKARLVAQGFMQVKGADYDEMFCPVVRLESLRTLVAMSVRRGFQLHQLDITTAFLNGTLEEEVFM 109
[Close]
BLAST of mRNA_F-serratus_M_contig1354.2636.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-18
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:    7 EMVGMVKNFVYNQVARPKDKLVIGTKLLYKRKIGQDGKVEKYKCRLVAQGFWQVKGVHYTEKYSPTPLTAPIRMLLAMSVAKDGELRHFDAEQAFLKADIDEEIYI 324
            E+  +  N  +  V  P +K  IG K +YK K   DG +E+YK RLVAQGF Q++G+ Y E +SP      +R  LA++VAK  EL   D   AFL  D++EE+Y+
Sbjct:  103 EIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYM 208
[Close]
BLAST of mRNA_F-serratus_M_contig1354.2636.1 vs. uniprot
Match: A0A5E8C1Z7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1Z7_9ASCO)

HSP 1 Score: 89.0 bits (219), Expect = 2.260e-18
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    4 TEMVGMVKNFVYNQVARPKDKLVIGTKLLYKRKIGQDGKVEKYKCRLVAQGFWQVKGVHYTEKYSPTPLTAPIRMLLAMSVAKDGELRHFDAEQAFLKADIDEEIYI 324
            +E   +  N VY  V  P  +  +GTK + K+K+  DG ++KYK RLV QGF Q  GV Y + ++P    + +R++ A+S AK+ E+ H D + AFL  D++E+IY+
Sbjct:  600 SEFAAIDGNHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYV 706
[Close]
BLAST of mRNA_F-serratus_M_contig1354.2636.1 vs. uniprot
Match: A0A5E8BZM0_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZM0_9ASCO)

HSP 1 Score: 89.0 bits (219), Expect = 2.260e-18
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    4 TEMVGMVKNFVYNQVARPKDKLVIGTKLLYKRKIGQDGKVEKYKCRLVAQGFWQVKGVHYTEKYSPTPLTAPIRMLLAMSVAKDGELRHFDAEQAFLKADIDEEIYI 324
            +E   +  N VY  V  P  +  +GTK + K+K+  DG ++KYK RLV QGF Q  GV Y + ++P    + +R++ A+S AK+ E+ H D + AFL  D++E+IY+
Sbjct:  913 SEFAAIDGNHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYV 1019
[Close]
BLAST of mRNA_F-serratus_M_contig1354.2636.1 vs. uniprot
Match: A0A5E8C4M5_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4M5_9ASCO)

HSP 1 Score: 89.0 bits (219), Expect = 2.290e-18
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    4 TEMVGMVKNFVYNQVARPKDKLVIGTKLLYKRKIGQDGKVEKYKCRLVAQGFWQVKGVHYTEKYSPTPLTAPIRMLLAMSVAKDGELRHFDAEQAFLKADIDEEIYI 324
            +E   +  N VY  V  P  +  +GTK + K+K+  DG ++KYK RLV QGF Q  GV Y + ++P    + +R++ A+S AK+ E+ H D + AFL  D++E+IY+
Sbjct: 1505 SEFAAIDGNHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYV 1611
[Close]
BLAST of mRNA_F-serratus_M_contig1354.2636.1 vs. uniprot
Match: A0A5E8C1N6_9ASCO (Integrase catalytic domain-containing protein n=3 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1N6_9ASCO)

HSP 1 Score: 89.0 bits (219), Expect = 2.300e-18
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    4 TEMVGMVKNFVYNQVARPKDKLVIGTKLLYKRKIGQDGKVEKYKCRLVAQGFWQVKGVHYTEKYSPTPLTAPIRMLLAMSVAKDGELRHFDAEQAFLKADIDEEIYI 324
            +E   +  N VY  V  P  +  +GTK + K+K+  DG ++KYK RLV QGF Q  GV Y + ++P    + +R++ A+S AK+ E+ H D + AFL  D++E+IY+
Sbjct: 1893 SEFAAIDGNHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYV 1999
[Close]
BLAST of mRNA_F-serratus_M_contig1354.2636.1 vs. uniprot
Match: A0A5E8C8U5_9ASCO (Uncharacterized protein n=2 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C8U5_9ASCO)

HSP 1 Score: 89.0 bits (219), Expect = 2.310e-18
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    4 TEMVGMVKNFVYNQVARPKDKLVIGTKLLYKRKIGQDGKVEKYKCRLVAQGFWQVKGVHYTEKYSPTPLTAPIRMLLAMSVAKDGELRHFDAEQAFLKADIDEEIYI 324
            +E   +  N VY  V  P  +  +GTK + K+K+  DG ++KYK RLV QGF Q  GV Y + ++P    + +R++ A+S AK+ E+ H D + AFL  D++E+IY+
Sbjct: 2385 SEFAAIDGNHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYV 2491
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1354.2636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R6NNP3_9APHY3.570e-2246.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C2WN23_AMAMK6.990e-2247.42Integrase catalytic domain-containing protein (Fra... [more]
A0A060SUY4_PYCCI1.870e-1942.45Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A1X1QSJ2_9GAMM1.040e-1842.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438GNV2_VITVI1.560e-1842.45Retrovirus-related Pol polyprotein from transposon... [more]
A0A5E8C1Z7_9ASCO2.260e-1839.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8BZM0_9ASCO2.260e-1839.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C4M5_9ASCO2.290e-1839.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8C1N6_9ASCO2.300e-1839.25Integrase catalytic domain-containing protein n=3 ... [more]
A0A5E8C8U5_9ASCO2.310e-1839.25Uncharacterized protein n=2 Tax=Saprochaete ingens... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1354contigF-serratus_M_contig1354:130085..130408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score87.8
Seed ortholog evalue3.3e-15
Seed eggNOG ortholog946362.XP_004996907.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,COG2801@1,KOG0017@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929338.26031-UTR-F-serratus_M_contig1354:130084..1300931622929338.26031-UTR-F-serratus_M_contig1354:130084..130093Fucus serratus maleUTRF-serratus_M_contig1354 130085..130093 +
1690962805.1425366-UTR-F-serratus_M_contig1354:130084..1300931690962805.1425366-UTR-F-serratus_M_contig1354:130084..130093Fucus serratus maleUTRF-serratus_M_contig1354 130085..130093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929338.2774541-CDS-F-serratus_M_contig1354:130093..1304081622929338.2774541-CDS-F-serratus_M_contig1354:130093..130408Fucus serratus maleCDSF-serratus_M_contig1354 130094..130408 +
1690962805.1523006-CDS-F-serratus_M_contig1354:130093..1304081690962805.1523006-CDS-F-serratus_M_contig1354:130093..130408Fucus serratus maleCDSF-serratus_M_contig1354 130094..130408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1354.2636.1prot_F-serratus_M_contig1354.2636.1Fucus serratus malepolypeptideF-serratus_M_contig1354 130094..130408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1354.2636.1

>prot_F-serratus_M_contig1354.2636.1 ID=prot_F-serratus_M_contig1354.2636.1|Name=mRNA_F-serratus_M_contig1354.2636.1|organism=Fucus serratus male|type=polypeptide|length=105bp
MVGMVKNFVYNQVARPKDKLVIGTKLLYKRKIGQDGKVEKYKCRLVAQGF
WQVKGVHYTEKYSPTPLTAPIRMLLAMSVAKDGELRHFDAEQAFLKADID
EEIYI
back to top

mRNA from alignment at F-serratus_M_contig1354:130085..130408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1354.2636.1 ID=mRNA_F-serratus_M_contig1354.2636.1|Name=mRNA_F-serratus_M_contig1354.2636.1|organism=Fucus serratus male|type=mRNA|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig1354:130085..130408+ (Fucus serratus male)
AAGACTGAGATGGTTGGAATGGTCAAGAACTTCGTTTATAATCAGGTGGC
TCGGCCGAAGGATAAGCTCGTGATCGGCACGAAACTGTTATACAAGCGAA
AAATCGGACAGGACGGCAAGGTCGAGAAGTACAAGTGTCGACTTGTCGCT
CAAGGGTTCTGGCAGGTGAAAGGTGTGCACTACACGGAAAAGTACTCGCC
CACGCCATTAACCGCGCCAATCCGGATGCTTTTGGCGATGTCAGTGGCCA
AGGACGGAGAGCTGCGCCATTTCGACGCAGAGCAGGCATTTTTGAAGGCG
GATATTGACGAAGAAATATACATT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1354:130085..130408+

>mRNA_F-serratus_M_contig1354.2636.1 ID=mRNA_F-serratus_M_contig1354.2636.1|Name=mRNA_F-serratus_M_contig1354.2636.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig1354:130085..130408+ (Fucus serratus male)
ATGGTTGGAATGGTCAAGAACTTCGTTTATAATCAGGTGGCTCGGCCGAA
GGATAAGCTCGTGATCGGCACGAAACTGTTATACAAGCGAAAAATCGGAC
AGGACGGCAAGGTCGAGAAGTACAAGTGTCGACTTGTCGCTCAAGGGTTC
TGGCAGGTGAAAGGTGTGCACTACACGGAAAAGTACTCGCCCACGCCATT
AACCGCGCCAATCCGGATGCTTTTGGCGATGTCAGTGGCCAAGGACGGAG
AGCTGCGCCATTTCGACGCAGAGCAGGCATTTTTGAAGGCGGATATTGAC
GAAGAAATATACATTATGGTTGGAATGGTCAAGAACTTCGTTTATAATCA
GGTGGCTCGGCCGAAGGATAAGCTCGTGATCGGCACGAAACTGTTATACA
AGCGAAAAATCGGACAGGACGGCAAGGTCGAGAAGTACAAGTGTCGACTT
GTCGCTCAAGGGTTCTGGCAGGTGAAAGGTGTGCACTACACGGAAAAGTA
CTCGCCCACGCCATTAACCGCGCCAATCCGGATGCTTTTGGCGATGTCAG
TGGCCAAGGACGGAGAGCTGCGCCATTTCGACGCAGAGCAGGCATTTTTG
AAGGCGGATATTGACGAAGAAATATACATT
back to top