mRNA_F-serratus_M_contig1354.2633.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1354.2633.1
Unique NamemRNA_F-serratus_M_contig1354.2633.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1354.2633.1 vs. uniprot
Match: A0A6H5KTP6_9PHAE (Ig-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.020e-21
Identity = 73/152 (48.03%), Postives = 93/152 (61.18%), Query Frame = 1 
Query:  463 VRFADECGSELITGICQTTHWWNDMIFGIYRCP--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFYRVLPPGELLRFIEELSKGVEATLLEPTFIGKKKSRR-ILLYTEDDGESICWLETGGKRGSEPFCLPCKTLMEVKDCTGLATKS 909
            VR++DECG EL+T +  TT +W  M+ G   C    XXXXXXXXXXXX                  A     PPGEL RFI ELS+GVEATL+ P   G  K RR ++LYTED+GESICW++TG     EP+ +  KTL+EVKD +G  +++
Sbjct:   99 VRWSDECGGELVTQVRTTTDFWEMMVLGDGGCCTCXXXXXXXXXXXXXTETVCDGCGELRRRPGGDACCSSSPPGELFRFIAELSRGVEATLVFPGLGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRSKTLLEVKDKSGAGSRA 250
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BLAST of mRNA_F-serratus_M_contig1354.2633.1 vs. uniprot
Match: D8LE00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE00_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.000e-14
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:  703 ELSKGVEATLLEPTFIGKKKSRR-ILLYTEDDGESICWLETGGKRGSEPFCLPCKTLMEVKDCTGLATKS 909
            +LS+GVEATL+ P F G  K RR ++LYTED+GESICW++TG     EP+ + CKTL+EV+D +G  + +
Sbjct:   14 QLSRGVEATLVFPGFGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRCKTLLEVRDKSGAGSSA 83
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1354.2633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTP6_9PHAE3.020e-2148.03Ig-like domain-containing protein n=1 Tax=Ectocarp... [more]
D8LE00_ECTSI5.000e-1452.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1354contigF-serratus_M_contig1354:26396..30185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size3790
Cds size1230
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1354.2633.1prot_F-serratus_M_contig1354.2633.1Fucus serratus malepolypeptideF-serratus_M_contig1354 26585..27814 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929337.564217-UTR-F-serratus_M_contig1354:26395..265841622929337.564217-UTR-F-serratus_M_contig1354:26395..26584Fucus serratus maleUTRF-serratus_M_contig1354 26396..26584 +
1690962804.8692818-UTR-F-serratus_M_contig1354:26395..265841690962804.8692818-UTR-F-serratus_M_contig1354:26395..26584Fucus serratus maleUTRF-serratus_M_contig1354 26396..26584 +
1622929337.592433-UTR-F-serratus_M_contig1354:27814..301851622929337.592433-UTR-F-serratus_M_contig1354:27814..30185Fucus serratus maleUTRF-serratus_M_contig1354 27815..30185 +
1690962804.8903456-UTR-F-serratus_M_contig1354:27814..301851690962804.8903456-UTR-F-serratus_M_contig1354:27814..30185Fucus serratus maleUTRF-serratus_M_contig1354 27815..30185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929337.5782092-CDS-F-serratus_M_contig1354:26584..278141622929337.5782092-CDS-F-serratus_M_contig1354:26584..27814Fucus serratus maleCDSF-serratus_M_contig1354 26585..27814 +
1690962804.879995-CDS-F-serratus_M_contig1354:26584..278141690962804.879995-CDS-F-serratus_M_contig1354:26584..27814Fucus serratus maleCDSF-serratus_M_contig1354 26585..27814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1354.2633.1

>prot_F-serratus_M_contig1354.2633.1 ID=prot_F-serratus_M_contig1354.2633.1|Name=mRNA_F-serratus_M_contig1354.2633.1|organism=Fucus serratus male|type=polypeptide|length=410bp
MDGIAAALHTMKDRRMEYTKKRCNSCLTSSLTTPVQPSSPAHGVESPAAA
ARLIDVQADDTHQAASSSGGAPGASMSPNSTGADGIIPSRGVRFADECGS
ELITGICQTTHWWNDMIFGIYRCPGCGSEAATSSSAASRDWVEESAGYSR
CDGCGAFYRVLPPGELLRFIEELSKGVEATLLEPTFIGKKKSRRILLYTE
DDGESICWLETGGKRGSEPFCLPCKTLMEVKDCTGLATKSTPRGKSVDSR
SLHRQSSALTSSPTAKGGEYEYSFSLAALSEKSQEVEAAESSGKNRATFR
YRGVKNLGPVSASTLGASSFEAVAGALTEEGGKLSRSDRDNKKPEGGYID
DDDASRGEAREVRIKLRFRLKPTSSCLKKVTIVDVRCSCPSVFARGMMQL
QEHNTDLLM*
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mRNA from alignment at F-serratus_M_contig1354:26396..30185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1354.2633.1 ID=mRNA_F-serratus_M_contig1354.2633.1|Name=mRNA_F-serratus_M_contig1354.2633.1|organism=Fucus serratus male|type=mRNA|length=3790bp|location=Sequence derived from alignment at F-serratus_M_contig1354:26396..30185+ (Fucus serratus male)
AAATAATCGTGTAGGCTAGGTTCAAAATTGCAATTTCGAAGGCGCAGCAA
TATCAGTAAAAATCACCAGAATACTAAACTCTATAGTTGAATACACCAGG
GGCGACGACCCATAGCTACAGTACTGGAGAGGCGAGAGCAAGCGAACGGC
TATTCTCTTGTGGCGGTAAACACAGCTGGGACGATCAGAATGGACGGCAT
TGCGGCCGCACTCCACACCATGAAGGACAGGAGGATGGAATATACGAAGA
AGCGTTGTAACTCGTGTCTGACATCGTCTCTAACAACTCCAGTTCAACCG
TCGTCCCCTGCCCACGGGGTCGAGTCTCCAGCAGCTGCTGCTCGACTAAT
CGACGTCCAGGCGGATGACACTCATCAAGCAGCCTCGTCTTCTGGTGGAG
CACCCGGCGCATCAATGAGCCCCAACTCTACCGGCGCTGACGGCATCATT
CCCAGTAGGGGAGTTCGCTTCGCTGATGAATGCGGATCGGAACTCATCAC
AGGTATCTGTCAGACGACGCACTGGTGGAATGATATGATCTTCGGCATTT
ACAGGTGCCCAGGTTGTGGTTCTGAGGCAGCAACTTCTTCTTCAGCAGCG
AGTAGAGACTGGGTCGAAGAGTCAGCGGGCTATTCCCGCTGCGACGGTTG
CGGGGCGTTCTATAGGGTGCTGCCCCCTGGCGAACTCCTCCGGTTCATCG
AGGAGCTGAGCAAGGGCGTGGAAGCGACCTTGCTCGAGCCCACGTTCATT
GGCAAGAAAAAAAGCAGGAGGATTTTGCTCTACACAGAAGATGATGGGGA
ATCGATATGCTGGTTGGAGACTGGAGGCAAGCGGGGGAGCGAGCCGTTTT
GCTTACCCTGTAAAACTCTGATGGAGGTGAAGGATTGCACAGGGCTGGCG
ACGAAGAGCACGCCGAGGGGGAAAAGCGTGGATTCGCGGAGTCTACATCG
CCAGTCGTCTGCTCTTACTAGCAGCCCGACGGCGAAAGGCGGCGAGTACG
AGTATTCATTTTCCCTCGCAGCCCTTTCCGAGAAGTCACAGGAAGTTGAA
GCGGCTGAATCATCAGGAAAAAATAGAGCTACATTTCGTTACCGAGGGGT
CAAGAATCTCGGGCCGGTCAGCGCCTCGACGCTCGGGGCCTCTAGCTTTG
AAGCCGTGGCTGGGGCTCTAACAGAAGAAGGAGGAAAACTATCGAGGAGC
GATCGCGACAACAAAAAGCCGGAAGGTGGATACATCGATGACGATGATGC
CTCGCGTGGTGAAGCGCGTGAGGTTCGCATCAAGCTGCGTTTTCGGTTGA
AGCCAACATCATCGTGCCTCAAAAAGGTGACCATCGTCGACGTGCGCTGC
TCCTGTCCCTCTGTGTTCGCTAGGGGTATGATGCAGCTGCAAGAACATAA
CACGGATCTTCTCATGTAGAGCTAGTAGTAGTAGTAGTACAGCAGTGCTA
TCTGTCGGTGGTATAGCTAGCCCCCCTGAAAAGTTCGGCTCGATCGTGAA
TCATATCGCAGACGCGTGCATGCATACAGCAATAGTAGTAGTGGAATAAG
ACGAAGCCACCTAAACGTTCTGACATTTCCCCCTGACTGGAGGATGCTCA
GAAGGTCTAGATGATTTTACTGTATGTACGTACCAGTACGTGCATAGTAG
AGATCCCTACTCTACAGGTACTACTTTACAGTTTGATGCCTCGCGTCCAG
ACTTTTTTGCACCGCACGAGTTGGAAGAGGAGGCGCGCGGGATTGGATTA
GAGTGGCCGCTTCACGAGGACTCTGCACAGAGCTGTTCTGGAGCTGCTGT
ACAGATGGTTCAGCCAGTAGGTGAATACTGTCGCCTGGGTGTTGTACAGG
AAATGGCTGGTTGGGCCGTTGGGGGTTTTGGCCACACCATCCCAAGAAAA
AATGTACTTGAATCATACCTACCCATACAGGATTGTAGACAAATGCACAA
CAGCGGATATTTGTTTTTGTTTTTTACCGTACGTGGTGTTTTTGGTATTT
GTACTGTAGACTATTAATAGTGTAGCATCGACCTTCAATAAATAGGACTG
ATAGCTCTTATTACATACTGGTACAGTATAGTGTCTGCGTACACTATTAA
TGTTATAGCAAGTAAAGCCACTTGTGGCCGTGACCAGTACAAAAAAGCCT
CTCGCTTTCGGGGATCTCGCTCATGTCATGTGTCATGTGCGCATGGGCTA
ACACCCGTTTGAGGATCGCACCCTATAATAGGCTCCTAGAGCTAATTGCC
TAAACCATAACGCACGACGTGCAGTCTGACGATCGCAGGGAGGTTCACAG
CTCAGGTCCGGGCGTTTTATTGAAAAATAAGGCTCAACGTCTGTGTCTCT
ATTGTGCTTGTACAAGTGTTTGTGTGCGTACGTGAATAGACTATGATATC
CGTATGGTGTGTTTTTTTCTGTCGTAGATATTTTTCGTCGCTACAGCGCA
GTATCTCACCGCTGCTCGAACATATGACGTCATGTTGCTAAATACATACT
GGTACCAGGTACCTATACAGACAGTAGTAGTACCAATCTCGTTTTCTGCC
CCAGCCTGCAGCTTTTAAAAGTCGAGCGAACCACGACGAGCGGGGGCTGA
TATGAATTAGCTCTTACTACTGACTGTACAGCAATGTAGACTACCAGGGT
ACAGCACTATACAGCACCTTTCCAGTAAGTAGTGCGGGATGGAGTTGGTG
GTCGTCACAGGACGGATACGTACTTGTAGTAAGATATAGTAATATCTATA
TGGTAAGTTGTAGTACGAGAACCAGGGGAGATCAGAGAGGAAAAATAAAA
TAAAAATCCGTCGACCTCTCGGAACGAGGTGACGTAGTATTAATTAATAC
TTGTAGGTAAGGAGGCGTCTCTGTTGCGATGTTCGATACTGCTGTAGAGG
GGCGATGCATTTTAGGATCGTAGCGCGTAGCCGTCAAAATTATGTGTATG
TGTGGTGGGTTCGCTGGGGGGGGGCGCGGTGCAATGCGAAGCGATACGAC
GCGAAACCGGTAAGATCCTTTGATAATATGTATACCAGTATACAGTAGTG
TATACTTGTGCGAAGGGCTTACCGTAAAATGCTAGCGGCGTGAAGTGTGC
CACGTGCAAGCTTTACCCGAAGGCAGCCTCCGTTGACTCAAGCCACCGCG
GGAACGGGCTGGGTAGTCAGGGTTTACTTTACTCTACAGTAGGTAATTGG
TCTCTGTAGGGCGTCCACTCTTGTTTCATCTTGGTTTCTGTATGTTCACA
CTCCTGGGGTTCATCCAACATTCCGAAGGACTGCGTAGAATCGTTCATTG
ATGACAAGCTGCTGTGAAGGGGTTACGTATGATGTACCAGGTAGATTTTA
GATACAATATAAACAGCACAACAGTGTTATTTTCTCTTGCTTGCCTTTCG
GTTGGGGTTTCCTCTCGTGTACCTACCTTGGGCATCGAGGAGTGCGGGGG
TTTGTAAGGTGCACTCTGCACCTCTCGTCTTGTTTGCTCGATTCGTCGGT
GTCAGACGTCGATTGTTCCATGACGCCCGCAATGATGACTTGGAGTCATA
TTATGTTGCCTATTTTTGAGGAATACTTGCGGGGCACTTACAATACTATG
TTTGGCAACGGGGGGGGGCAAGATCTGACGTCACCATCACACGAAGGGTT
GCAGACAGCGTTGAGAGCACGAGCCGCATATATAGCTTGGGGGGTGAAAT
CGGTTCCTACCCTTGAGCGAATTACGTCGGTGGGGTCAGGTCCACCAGGT
TGAACTGTTAATAAATGATTGACTTCTGTGCATTTGAACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1354:26396..30185+

>mRNA_F-serratus_M_contig1354.2633.1 ID=mRNA_F-serratus_M_contig1354.2633.1|Name=mRNA_F-serratus_M_contig1354.2633.1|organism=Fucus serratus male|type=CDS|length=2460bp|location=Sequence derived from alignment at F-serratus_M_contig1354:26396..30185+ (Fucus serratus male)
ATGGACGGCATTGCGGCCGCACTCCACACCATGAAGGACAGGAGGATGGA
ATATACGAAGAAGCGTTGTAACTCGTGTCTGACATCGTCTCTAACAACTC
CAGTTCAACCGTCGTCCCCTGCCCACGGGGTCGAGTCTCCAGCAGCTGCT
GCTCGACTAATCGACGTCCAGGCGGATGACACTCATCAAGCAGCCTCGTC
TTCTGGTGGAGCACCCGGCGCATCAATGAGCCCCAACTCTACCGGCGCTG
ACGGCATCATTCCCAGTAGGGGAGTTCGCTTCGCTGATGAATGCGGATCG
GAACTCATCACAGGTATCTGTCAGACGACGCACTGGTGGAATGATATGAT
CTTCGGCATTTACAGGTGCCCAGGTTGTGGTTCTGAGGCAGCAACTTCTT
CTTCAGCAGCGAGTAGAGACTGGGTCGAAGAGTCAGCGGGCTATTCCCGC
TGCGACGGTTGCGGGGCGTTCTATAGGGTGCTGCCCCCTGGCGAACTCCT
CCGGTTCATCGAGGAGCTGAGCAAGGGCGTGGAAGCGACCTTGCTCGAGC
CCACGTTCATTGGCAAGAAAAAAAGCAGGAGGATTTTGCTCTACACAGAA
GATGATGGGGAATCGATATGCTGGTTGGAGACTGGAGGCAAGCGGGGGAG
CGAGCCGTTTTGCTTACCCTGTAAAACTCTGATGGAGGTGAAGGATTGCA
CAGGGCTGGCGACGAAGAGCACGCCGAGGGGGAAAAGCGTGGATTCGCGG
AGTCTACATCGCCAGTCGTCTGCTCTTACTAGCAGCCCGACGGCGAAAGG
CGGCGAGTACGAGTATTCATTTTCCCTCGCAGCCCTTTCCGAGAAGTCAC
AGGAAGTTGAAGCGGCTGAATCATCAGGAAAAAATAGAGCTACATTTCGT
TACCGAGGGGTCAAGAATCTCGGGCCGGTCAGCGCCTCGACGCTCGGGGC
CTCTAGCTTTGAAGCCGTGGCTGGGGCTCTAACAGAAGAAGGAGGAAAAC
TATCGAGGAGCGATCGCGACAACAAAAAGCCGGAAGGTGGATACATCGAT
GACGATGATGCCTCGCGTGGTGAAGCGCGTGAGGTTCGCATCAAGCTGCG
TTTTCGGTTGAAGCCAACATCATCGTGCCTCAAAAAGGTGACCATCGTCG
ACGTGCGCTGCTCCTGTCCCTCTGTGTTCGCTAGGGGTATGATGCAGCTG
CAAGAACATAACACGGATCTTCTCATGTAGATGGACGGCATTGCGGCCGC
ACTCCACACCATGAAGGACAGGAGGATGGAATATACGAAGAAGCGTTGTA
ACTCGTGTCTGACATCGTCTCTAACAACTCCAGTTCAACCGTCGTCCCCT
GCCCACGGGGTCGAGTCTCCAGCAGCTGCTGCTCGACTAATCGACGTCCA
GGCGGATGACACTCATCAAGCAGCCTCGTCTTCTGGTGGAGCACCCGGCG
CATCAATGAGCCCCAACTCTACCGGCGCTGACGGCATCATTCCCAGTAGG
GGAGTTCGCTTCGCTGATGAATGCGGATCGGAACTCATCACAGGTATCTG
TCAGACGACGCACTGGTGGAATGATATGATCTTCGGCATTTACAGGTGCC
CAGGTTGTGGTTCTGAGGCAGCAACTTCTTCTTCAGCAGCGAGTAGAGAC
TGGGTCGAAGAGTCAGCGGGCTATTCCCGCTGCGACGGTTGCGGGGCGTT
CTATAGGGTGCTGCCCCCTGGCGAACTCCTCCGGTTCATCGAGGAGCTGA
GCAAGGGCGTGGAAGCGACCTTGCTCGAGCCCACGTTCATTGGCAAGAAA
AAAAGCAGGAGGATTTTGCTCTACACAGAAGATGATGGGGAATCGATATG
CTGGTTGGAGACTGGAGGCAAGCGGGGGAGCGAGCCGTTTTGCTTACCCT
GTAAAACTCTGATGGAGGTGAAGGATTGCACAGGGCTGGCGACGAAGAGC
ACGCCGAGGGGGAAAAGCGTGGATTCGCGGAGTCTACATCGCCAGTCGTC
TGCTCTTACTAGCAGCCCGACGGCGAAAGGCGGCGAGTACGAGTATTCAT
TTTCCCTCGCAGCCCTTTCCGAGAAGTCACAGGAAGTTGAAGCGGCTGAA
TCATCAGGAAAAAATAGAGCTACATTTCGTTACCGAGGGGTCAAGAATCT
CGGGCCGGTCAGCGCCTCGACGCTCGGGGCCTCTAGCTTTGAAGCCGTGG
CTGGGGCTCTAACAGAAGAAGGAGGAAAACTATCGAGGAGCGATCGCGAC
AACAAAAAGCCGGAAGGTGGATACATCGATGACGATGATGCCTCGCGTGG
TGAAGCGCGTGAGGTTCGCATCAAGCTGCGTTTTCGGTTGAAGCCAACAT
CATCGTGCCTCAAAAAGGTGACCATCGTCGACGTGCGCTGCTCCTGTCCC
TCTGTGTTCGCTAGGGGTATGATGCAGCTGCAAGAACATAACACGGATCT
TCTCATGTAG
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