mRNA_F-serratus_M_contig1353.2631.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1353.2631.1
Unique NamemRNA_F-serratus_M_contig1353.2631.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1353.2631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1353contigF-serratus_M_contig1353:259231..260022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size792
Cds size582
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929337.0199304-UTR-F-serratus_M_contig1353:259230..2594401622929337.0199304-UTR-F-serratus_M_contig1353:259230..259440Fucus serratus maleUTRF-serratus_M_contig1353 259231..259440 +
1690962804.6043925-UTR-F-serratus_M_contig1353:259230..2594401690962804.6043925-UTR-F-serratus_M_contig1353:259230..259440Fucus serratus maleUTRF-serratus_M_contig1353 259231..259440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929337.0363774-CDS-F-serratus_M_contig1353:259440..2600221622929337.0363774-CDS-F-serratus_M_contig1353:259440..260022Fucus serratus maleCDSF-serratus_M_contig1353 259441..260022 +
1690962804.6128082-CDS-F-serratus_M_contig1353:259440..2600221690962804.6128082-CDS-F-serratus_M_contig1353:259440..260022Fucus serratus maleCDSF-serratus_M_contig1353 259441..260022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1353.2631.1prot_F-serratus_M_contig1353.2631.1Fucus serratus malepolypeptideF-serratus_M_contig1353 259441..260022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1353.2631.1

>prot_F-serratus_M_contig1353.2631.1 ID=prot_F-serratus_M_contig1353.2631.1|Name=mRNA_F-serratus_M_contig1353.2631.1|organism=Fucus serratus male|type=polypeptide|length=194bp
MAEFKSDSLERQEKLNNDLATFSGAEFEARVKEYVERREPGTAPTEDAPV
TPTPAPSASIGMYMPSPPPELRGRKNLAMFLERFYTWACIAGYDSALNSN
VPIKTSSAITRAHLERTYNHVMVDKSLRVWGSLTKAVERENDIMRMVMEI
GSPSLAWQALKKMVVETTDDAHDRTKREFENLEMGDHETVSEYF
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mRNA from alignment at F-serratus_M_contig1353:259231..260022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1353.2631.1 ID=mRNA_F-serratus_M_contig1353.2631.1|Name=mRNA_F-serratus_M_contig1353.2631.1|organism=Fucus serratus male|type=mRNA|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig1353:259231..260022+ (Fucus serratus male)
CGTTTCCCACCCTCTCTCCCTTCTTTCCCTCTCCGTTCCCAGTTAATATA
ATATAATACTGTGTGTTGTGTGTAAAATATCTTCATGTTCAAGGAAGCAT
CGCCTATTCCCATCAATACCGTCACCTGAATCCCAGAACCACAGGATCAT
CTAACACGCTTAGCGTTAAGGTACCTATCCTTCAACGACAAGGGACTTCA
ATAAAAGCAGATGGCTGAATTCaagAGCGATTCCCTTGAGAGACAGGAGA
AGCTCAACAACGACCTCGCAACTTTCTCCGGAGCAGAATTCGAGGCAAGG
GTGAAGGAATATGTGGAGAGAAGAGAGCCCGGGACAGCACCAACGGAGGA
TGCACCCGTCACGCCCACACCAGCTCCGTCAGCCAGTATTGGTATGTACA
TGCCCTCGCCTCCCCCCGAGTTACGAGGCCGTAAAAATCTGGCGATGTTC
TTAGAGCGGTTCTATACATGGGCTTGTATAGCGGGATATGACTCAGCGCT
TAATTCTAACGTACCAATAAAAACCTCGTCAGCGATTACACGGGCACATC
TCGAGCGAACATACAATCATGTAATGGTAGACAAGTCGCTTAGAGTCTGG
GGGTCTCTCACAAAAGCGGTAGAGAGAGAAAATGATATTATGCGTATGGT
AATGGAGATCGGGTCACCGTCACTCGCATGGCAGGCGTTAAAAAAGATGG
TAGTCGAAACGACAGACGACGCACACGATCGGACGAAACGAGAATTCGAA
AATCTTGAGATGGGAGATCACGAGACCGTATCAGAATACTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1353:259231..260022+

>mRNA_F-serratus_M_contig1353.2631.1 ID=mRNA_F-serratus_M_contig1353.2631.1|Name=mRNA_F-serratus_M_contig1353.2631.1|organism=Fucus serratus male|type=CDS|length=1164bp|location=Sequence derived from alignment at F-serratus_M_contig1353:259231..260022+ (Fucus serratus male)
ATGGCTGAATTCaagAGCGATTCCCTTGAGAGACAGGAGAAGCTCAACAA
CGACCTCGCAACTTTCTCCGGAGCAGAATTCGAGGCAAGGGTGAAGGAAT
ATGTGGAGAGAAGAGAGCCCGGGACAGCACCAACGGAGGATGCACCCGTC
ACGCCCACACCAGCTCCGTCAGCCAGTATTGGTATGTACATGCCCTCGCC
TCCCCCCGAGTTACGAGGCCGTAAAAATCTGGCGATGTTCTTAGAGCGGT
TCTATACATGGGCTTGTATAGCGGGATATGACTCAGCGCTTAATTCTAAC
GTACCAATAAAAACCTCGTCAGCGATTACACGGGCACATCTCGAGCGAAC
ATACAATCATGTAATGGTAGACAAGTCGCTTAGAGTCTGGGGGTCTCTCA
CAAAAGCGGTAGAGAGAGAAAATGATATTATGCGTATGGTAATGGAGATC
GGGTCACCGTCACTCGCATGGCAGGCGTTAAAAAAGATGGTAGTCGAAAC
GACAGACGACGCACACGATCGGACGAAACGAGAATTCGAAAATCTTGAGA
TGGGAGATCACGAGACCGTATCAGAATACTTTATGGCTGAATTCaagAGC
GATTCCCTTGAGAGACAGGAGAAGCTCAACAACGACCTCGCAACTTTCTC
CGGAGCAGAATTCGAGGCAAGGGTGAAGGAATATGTGGAGAGAAGAGAGC
CCGGGACAGCACCAACGGAGGATGCACCCGTCACGCCCACACCAGCTCCG
TCAGCCAGTATTGGTATGTACATGCCCTCGCCTCCCCCCGAGTTACGAGG
CCGTAAAAATCTGGCGATGTTCTTAGAGCGGTTCTATACATGGGCTTGTA
TAGCGGGATATGACTCAGCGCTTAATTCTAACGTACCAATAAAAACCTCG
TCAGCGATTACACGGGCACATCTCGAGCGAACATACAATCATGTAATGGT
AGACAAGTCGCTTAGAGTCTGGGGGTCTCTCACAAAAGCGGTAGAGAGAG
AAAATGATATTATGCGTATGGTAATGGAGATCGGGTCACCGTCACTCGCA
TGGCAGGCGTTAAAAAAGATGGTAGTCGAAACGACAGACGACGCACACGA
TCGGACGAAACGAGAATTCGAAAATCTTGAGATGGGAGATCACGAGACCG
TATCAGAATACTTT
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