mRNA_F-serratus_M_contig1353.2630.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1353.2630.1 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI) HSP 1 Score: 421 bits (1082), Expect = 1.240e-135 Identity = 244/428 (57.01%), Postives = 282/428 (65.89%), Query Frame = 1
Query: 196 LPDNDLEAERGSHVEDIDCSLVVRPTRTALDLTFFGEISYSFEIVSAHLVRPPKRPT-SKERNCLRRCPHGKACDCGGGAAGRGQRGGE-IEESGRKIVP--VEEEDERRGTA-------------HYAMHMGVNDVATLVLEDNQGITYDFYTFQVVEFDAATGAMALDRWNLFQCGVFRYSCALENVSKVESV---VYMMSAHAFEHLRQTKEFGLRVILSIPVHTGRATSS---SPHVVNAS------AAVAAEAQGGGVGRGSGFAGGALTPTTDLSPHMSRPR---WNAFLGRVS-CERRWGCLSGV---RRPLSRCALGATDSCFLYVDLLFGRKALDNRKLHGPVELVNDLLRRFANEAEVVGGSKGEGANDGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRAFISEKHTVFL 1371
+PDN+LEA +G HVEDIDCSLVVRPTRTALDL FFGE+SYSFEIV+A LVRPPKRP ++ C +C GKAC C + R +R E +E G+ V V E D H++++MGVNDVATLVLEDNQGITYDFYTFQVVEFDA +GAMALDRWNLF CGVFRYSCALEN+SKVE VYMMSAHAFEHLRQTKEFGLRVI S+P+ +A ++ SP NA + + G G+ SG GGA PR W R+ C R C G RRP +R L +T +Y++LLFG+K LD+R L PVE+VN+LL RFAN+ EV G K EG CCVCFRRRSRVVTFPCMHMATCPQCSESL+ CPLCRA ISEKHTVFL
Sbjct: 1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKACPCNHDSPARSRRLAEDVEPPGKTEVALSVPEGDGEXXXXXXXXXXXXXGVHPHHSLNMGVNDVATLVLEDNQGITYDFYTFQVVEFDADSGAMALDRWNLFHCGVFRYSCALENISKVEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQAATAHPRSPRPNNAGMNFSDPGGSSPSSDGDGISAVSGTVGGAPVARAAARRAAGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVL-STSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFANDVEVDVGEKKEG----NCCVCFRRRSRVVTFPCMHMATCPQCSESLTVCPLCRANISEKHTVFL 423
BLAST of mRNA_F-serratus_M_contig1353.2630.1 vs. uniprot
Match: A0A6H5JJL0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL0_9PHAE) HSP 1 Score: 270 bits (690), Expect = 6.050e-76 Identity = 153/273 (56.04%), Postives = 178/273 (65.20%), Query Frame = 1
Query: 610 QVVEFDAATGAMALDRWNLFQCGVFRYSCALENVSKVESV---VYMMSAHAFEHLRQTKEFGLRVILSIPVHTGRATSSSPHVVNASAAV---------AAEAQGGGVGRGSGFAGGALTPTTDLSPHMSRPR---WNAFLGRVS-CERRWGCLSGV---RRPLSRCALGATDSCFLYVDLLFGRKALDNRKLHGPVELVNDLLRRFANEAEVVGGSKGEGANDGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRAFISEKHTVFL 1371
+VVEFDA +GAMALDRWNLF CGVFRYSCALEN+SK+E VYMMSAHAFEHLRQTKEFGLRVI S+P+ + T++ P S A + + G G+ SG GGA + PR W R+ C R C G RRP +R L +T +Y++LLFG+K LD+R L PVE+VN+LL RFAN+ EV GG K EG CCVCFRRRSRVV FPCMHMATCPQCSESL+ CPLCRA ISEKHTVFL
Sbjct: 354 EVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQETTAHPRSPRPSNAAMNLSDTDGSSPSSDGDGISGVSGTVGGAPVARGTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVL-STSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFANDVEVDGGEKKEG----NCCVCFRRRSRVVMFPCMHMATCPQCSESLAVCPLCRANISEKHTVFL 621
BLAST of mRNA_F-serratus_M_contig1353.2630.1 vs. uniprot
Match: A0A6H5JRV5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV5_9PHAE) HSP 1 Score: 115 bits (289), Expect = 9.850e-27 Identity = 56/86 (65.12%), Postives = 66/86 (76.74%), Query Frame = 1
Query: 196 LPDNDLEAERGSHVEDIDCSLVVRPTRTALDLTFFGEISYSFEIVSAHLVRPPKRPT-SKERNCLRRCPHGKACDCGGGAAGRGQR 450
+PDN+LEA +G HVEDIDCSLVVRPTRTALDL FFGE+SYSFEIV+A LVRPPKRP ++ C +C GKAC C + R +R
Sbjct: 1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKACPCNRDSPARSRR 86 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1353.2630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1353.2630.1 >prot_F-serratus_M_contig1353.2630.1 ID=prot_F-serratus_M_contig1353.2630.1|Name=mRNA_F-serratus_M_contig1353.2630.1|organism=Fucus serratus male|type=polypeptide|length=446bp MEVLQKTKHKVVVRQRRPELLRAVVGCLVVTIIFYLLDARHPKSSLHCARback to top mRNA from alignment at F-serratus_M_contig1353:222834..256814+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1353.2630.1 ID=mRNA_F-serratus_M_contig1353.2630.1|Name=mRNA_F-serratus_M_contig1353.2630.1|organism=Fucus serratus male|type=mRNA|length=33981bp|location=Sequence derived from alignment at F-serratus_M_contig1353:222834..256814+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1353:222834..256814+ >mRNA_F-serratus_M_contig1353.2630.1 ID=mRNA_F-serratus_M_contig1353.2630.1|Name=mRNA_F-serratus_M_contig1353.2630.1|organism=Fucus serratus male|type=CDS|length=2676bp|location=Sequence derived from alignment at F-serratus_M_contig1353:222834..256814+ (Fucus serratus male)back to top |