mRNA_F-serratus_M_contig1352.2625.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1352.2625.1
Unique NamemRNA_F-serratus_M_contig1352.2625.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1352.2625.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 6.330e-69
Identity = 127/346 (36.71%), Postives = 189/346 (54.62%), Query Frame = 1 
Query:   28 ECPLRCEDLFGKLEDGPSGKTQSVRLQVRGEPKSGTGMIGEWSWGALAHKCLYLQRLYGLQSCRVVWKN----------DMDNANFRVETHSIIFEPEL------AAQDKSKRCTCTGVKKVEITLSAGRKHMLPVDPTCRWFHARGITKKGFRACEPSDGGPVENHPQLWACVQESMCNIMDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLDKEKVESVDHFFMNHLDSIAQWISLRYVLFTQIMPERSEVFWYEDAVADPIEWHGRYYNFVGLRPPPGVIHHASAIATKGGSILGFPAKGLDYHPDGEEQAPTRTFRDELSAESLAMMDDVLRKWLPPIILRR 1017
            ECP  CE +FGKL    +G  Q V LQ+RGEPKSGT  + EW+  AL   C  L RLYG  +C   W+             + A   ++    +F+P        A    +  C C+ V KV I +S+  KH LPV P+C W H   +T +  + C   +G  V N+     C+Q+  C I+DD +Q+ +LRDPRAV VSS+F L     P       ESVD F +  L +I  +I LRY++  + +  ++  F Y++++ADP++WH R+ + VGL PPPGV+  A+  + +     GF  KG+D HP G+E    RT+ DE+S +    ++ + R+WLPP++L +
Sbjct:   82 ECPP-CETMFGKL----NGAQQHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPEN-KGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLR--REYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEK 419
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BLAST of mRNA_F-serratus_M_contig1352.2625.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.450e-44
Identity = 89/230 (38.70%), Postives = 131/230 (56.96%), Query Frame = 1 
Query:  334 VKKVEITLSAGRKHMLPVDPTCRWFHARGITKKGFRACEPSDGGPVENHPQLWACVQESMCNIMDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLDKEKVE-SVDHFFMNHLDSIAQWISLRYVLFTQIMPERSEVFWYEDAVADPIEWHGRYYNFVGLRPPPGVIHHASAIATKGGSILGFPA-KGLDYHPDGEEQAPTRTFRDELSAESLAMMDDVLRKWLPPIILRR 1017
            +++VEI++S   KH LPV+ +C W H  G   +G   C   DG PVE    LWAC+Q++ C I D+ LQ   +RDPRAV VS+YF    + +   + +K+  S+D   +  L  +  + +LR++LF  ++  R+E+FWYE  V DP +WH R+ +F GL  P G I          G +    A K L+ HP G E +  RT++DE+S      MD +LRKWLP ++L R
Sbjct:    2 LRRVEISISTVDKHRLPVNESCPWSHGSGTVHEGD-GCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDN---NYQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWID---------GMVAENQAHKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLAR 218
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BLAST of mRNA_F-serratus_M_contig1352.2625.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.460e-27
Identity = 63/168 (37.50%), Postives = 96/168 (57.14%), Query Frame = 1 
Query:  520 IMDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLDK-EKVESVDHFFMNHLDSIAQWISLRYVLFTQIMPERSEVFWYEDAVADPIEWHGRYYNFVGLRPPPGVIHHASAIATKGGSILGFPAKGLDYHPDGEEQAPTRTFRDELSAESLAMMDDVLRKWLPPIILRRL 1020
            ++DDSLQ AVLRDPRAV VS+YF +    +   D   + +S+D   +  L  + Q+ ++R++LF   + ++SE+FWYEDA+ DP+ WH R+ +F G   P   I    A   +    +       D HP G++ +  RT+ DE+S      MD +LR WLP ++L RL
Sbjct:   25 LLDDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKV-----KRDPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERL 187
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BLAST of mRNA_F-serratus_M_contig1352.2625.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 5.550e-23
Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 1 
Query:  550 LRDPRAVTVSSYFQLARQKSPMLDKEKVESVDHFFMNHLDSIAQWISLRYVLFTQIMPERSEVFWYEDAVADPIEWHGRYYNFVGLRPPPGVIHHASAIATKGGSILGFPAKGLDYHPDGEEQAPTRTFRDELSAESLAMMDDVLRKWLPPIILRR 1017
            +RDPRAV VS+YF + R    +    + +S+D   +  L  I Q+ ++R++LF   + +RSE+FWYEDA+ DP+ W+ R+ +  G   P   I    A  T+         +  + HP G+  +  RT+ DE+S E+   M+ +LR WLP ++L R
Sbjct:    1 MRDPRAVAVSTYFYIKRSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAEN----DRKREPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLAR 152
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1352.2625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJE4_ECTSI6.330e-6936.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDV7_9PHAE1.450e-4438.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG38_9PHAE1.460e-2737.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T4_ECTSI5.550e-2334.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1352contigF-serratus_M_contig1352:13471..16519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1035
Cds size1035
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1352.2625.1prot_F-serratus_M_contig1352.2625.1Fucus serratus malepolypeptideF-serratus_M_contig1352 13471..16519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929336.8215058-CDS-F-serratus_M_contig1352:13470..141641622929336.8215058-CDS-F-serratus_M_contig1352:13470..14164Fucus serratus maleCDSF-serratus_M_contig1352 13471..14164 -
1690962804.4808514-CDS-F-serratus_M_contig1352:13470..141641690962804.4808514-CDS-F-serratus_M_contig1352:13470..14164Fucus serratus maleCDSF-serratus_M_contig1352 13471..14164 -
1622929336.8404474-CDS-F-serratus_M_contig1352:15359..155641622929336.8404474-CDS-F-serratus_M_contig1352:15359..15564Fucus serratus maleCDSF-serratus_M_contig1352 15360..15564 -
1690962804.498396-CDS-F-serratus_M_contig1352:15359..155641690962804.498396-CDS-F-serratus_M_contig1352:15359..15564Fucus serratus maleCDSF-serratus_M_contig1352 15360..15564 -
1622929336.857527-CDS-F-serratus_M_contig1352:16383..165191622929336.857527-CDS-F-serratus_M_contig1352:16383..16519Fucus serratus maleCDSF-serratus_M_contig1352 16384..16519 -
1690962804.5168169-CDS-F-serratus_M_contig1352:16383..165191690962804.5168169-CDS-F-serratus_M_contig1352:16383..16519Fucus serratus maleCDSF-serratus_M_contig1352 16384..16519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1352.2625.1

>prot_F-serratus_M_contig1352.2625.1 ID=prot_F-serratus_M_contig1352.2625.1|Name=mRNA_F-serratus_M_contig1352.2625.1|organism=Fucus serratus male|type=polypeptide|length=345bp
SPEELFPDVECPLRCEDLFGKLEDGPSGKTQSVRLQVRGEPKSGTGMIGE
WSWGALAHKCLYLQRLYGLQSCRVVWKNDMDNANFRVETHSIIFEPELAA
QDKSKRCTCTGVKKVEITLSAGRKHMLPVDPTCRWFHARGITKKGFRACE
PSDGGPVENHPQLWACVQESMCNIMDDSLQIAVLRDPRAVTVSSYFQLAR
QKSPMLDKEKVESVDHFFMNHLDSIAQWISLRYVLFTQIMPERSEVFWYE
DAVADPIEWHGRYYNFVGLRPPPGVIHHASAIATKGGSILGFPAKGLDYH
PDGEEQAPTRTFRDELSAESLAMMDDVLRKWLPPIILRRLRLID*
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mRNA from alignment at F-serratus_M_contig1352:13471..16519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1352.2625.1 ID=mRNA_F-serratus_M_contig1352.2625.1|Name=mRNA_F-serratus_M_contig1352.2625.1|organism=Fucus serratus male|type=mRNA|length=3049bp|location=Sequence derived from alignment at F-serratus_M_contig1352:13471..16519- (Fucus serratus male)
TCGCCCGAGGAGCTTTTCCCCGACGTGGAATGCCCGCTCCGCTGCGAGGA
CCTGTTCGGTAAGCTCGAGGACGGACCATCGGGAAAGACGCAGTCCGTGA
GGCTGCAGGTGCGAGGAGAACCGAAGAGTGGTACAGGTGCGCTCGGATGT
GCGCACGGGCACCGTCGACCGTTGTAAGGACGTTGCCCTCGACTGGAATC
GATACACGGCTTTTTGTACCATATTTTTGTGTAAGATGTGCGACGAGGCG
AGTTGGGTTCAGTTACGACGCGAGCCCGTCCTACGTTTACGTGTTGTTGT
CCCAAGCAACAGATGGCGGGAGGAGCGTCCGTATAAGAAGAAATATGCAG
CAGTTTTGTTGTTCCCTCCATCGTACTGGCATCCACGACACACGCACCTC
CCCACATACTACACACTCTCTGACCCATTTCCAGCGCTGGCGTGATTCTT
TTTTTTTGTCGACGAAGCGCGCGCGTCCACAAGCGCACGAATGGACATAT
ATGATATATTGTTTTTTGCAGCGATCAGACTATGTTACGCCCGTTCCACA
TGACATGTATCTTCATGAGTGAGTGACCTTTGGGCACAGAGCAGTCCAAA
CACTGCTAGGAAATAATATCGCTCTGAAATCGATAAGTTTGGTGGTCGGA
GCTGCCTGAGGATCCACCGTATACATATCCTTGAAAATAGCAGTGATTGT
ATTGCATAGTCGGGGGGCACTGCATGCCAGTTCGCATATAGAGTCTTGTA
TCCTAGCAAGCAATCAACAAAACGTGTGCCACGCGATGCGCCACGCCACG
CAGGGGTAGAACCACTTAACGTTTGTGTGAAAACTTGCTTCGCTATCGTC
GCCCCTCTCCCCCAACCCCCTCACCCCTCCCGACTATGATGTTGTTTCAT
CTCCCTCCTCCAATCAAACCACCATGAATGGATCTCTGTTTATCTTGATT
TTTAGGTATGATAGGCGAGTGGAGCTGGGGGGCACTGGCCCACAAGTGCC
TCTATCTGCAGAGACTCTATGGCCTGCAAAGCTGCCGCGTCGTCTGGAAG
AACGATATGGACAACGCCAACTTTCGAGTCGAAACCCACTCGATCATCTT
CGAGCCAGAGCTGGCGGCCCAGGACAAGAGCAAGCGCTGCACCTGTACCG
GCGTCAAAAAGTGAGAAGTCGCGACAAGTATATGCCTTGTGTGAACCGTT
GTGGAGGTCTCGGGCGGAGGGGGGGCGGGGGAGGGGAGGTCGACAGACGC
AAAGATATGGAAGGCTCCGCCACACGTAGAAAATGACTTTGCCAGTAAAA
ACGTTGTGAGAGAAGATCGTATTTCGCTTCCGGCGGAGAGCACTTGATTC
GGCTACGACATCTCCTTGTTATGCCTGTGGCCACGACCGATGCACGCGTG
AGATGGACGCATATCGTGAACGCTTGTCGCCCGGGTTGTGAGGGCGGGAT
TTCAGAATTATACTCGTATCGGGCTGTGGATTTTCCTTTTTGGTCTTCAT
CGCGGAACGCGTATGAGGACTTGAGTAGGACTGAGTATATGTCGCGAGTT
TATCATTGGAAGCTTGCACCGTGGGGAGAGGTGGGTGTGTATCGATCCCT
CCGCGACGACCAGGCGAGATAGACAAAACGCTTTAGTGGGTAGGATTTGT
TAAGGCCGCGGGTACCTCTAATATACGGCGTAAGTTTTATGATTGGGTTC
GTATTGTTTTGTGGACGCCATAAGCGGGGCGTCCAACCGTTTCGTCGCAA
CATCTGAAGTTCGACGAAATTGTTGGGGTTATTATAGTCTACACGTTTGC
GTCCCCGTAGTATACGATTGGCCACAGAGCGAGTAGCTTGGGCCGTGAAT
GCTTAAAAATGCTCTATATATCTATGTTTTGTATAGGCTTAATCGTCCCT
GTAGACGCGCTTACATTTCGGCGCCCAACCTTTGAACACCAGCATCCTGC
ATAAAATATGAATATGCTGCTGTAATCAATCACTCAATCCCCACAAGTCT
CTAGAAACTCCTGACGAAGTCGTGTCGCGTCATGTCACGTTGCATCGCCA
CGAATAGCGAGGGCCCTGAACGCCTTTAAATGTGAGCTATTAATAAGCTG
ATTTGATAGCGCTGTGATCCCGCGACCTTGAGTCAGAAATGCACAAGACG
AAAAAGAAAAATATGTTTAAGCCAATACATACCGTGCGTGTCGAACCGAC
CCGTGTACAGCAGACCAGCTGCTGTCCTTTGTCTCTGCTCATCATGACCC
TTCTGCTGTCATTCCCTGTTGTGCCAATACCGCTGCCTATATACATCGCC
GTCGTCTCTTGGGCATCTGTGTTCTTCTTGGCACCCTATGACCCGTTCCT
CGCAGGGTGGAAATCACGCTCTCCGCGGGGCGAAAGCACATGCTCCCCGT
CGACCCGACGTGCCGCTGGTTTCACGCCCGTGGCATCACCAAGAAGGGCT
TCCGGGCGTGCGAGCCATCGGACGGCGGGCCGGTGGAGAACCACCCCCAG
CTGTGGGCGTGCGTGCAAGAGTCCATGTGCAACATCATGGACGACAGCCT
CCAGATTGCGGTGCTTCGCGACCCGCGTGCCGTGACGGTCAGCTCCTACT
TTCAGCTCGCCCGGCAGAAATCGCCCATGCTGGACAAGGAGAAAGTAGAG
TCTGTCGACCACTTTTTCATGAACCACCTGGACTCTATTGCTCAGTGGAT
CAGCCTCCGATACGTGCTATTCACCCAGATCATGCCGGAGAGGTCTGAGG
TGTTTTGGTACGAGGACGCGGTCGCTGATCCGATCGAGTGGCATGGGCGT
TACTATAACTTCGTGGGTCTTCGTCCTCCGCCAGGGGTGATCCACCACGC
TTCAGCCATCGCCACGAAGGGTGGGAGTATTCTGGGCTTCCCGGCCAAGG
GCCTCGATTACCACCCCGATGGGGAGGAGCAAGCGCCCACTCGAACTTTC
CGAGACGAGCTAAGCGCCGAGTCGCTCGCCATGATGGACGACGTGCTTCG
CAAGTGGCTACCGCCGATCATTCTGAGACGATTGCGCCTGATCGACTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1352:13471..16519-

>mRNA_F-serratus_M_contig1352.2625.1 ID=mRNA_F-serratus_M_contig1352.2625.1|Name=mRNA_F-serratus_M_contig1352.2625.1|organism=Fucus serratus male|type=CDS|length=2070bp|location=Sequence derived from alignment at F-serratus_M_contig1352:13471..16519- (Fucus serratus male)
TCGCCCGAGGAGCTTTTCCCCGACGTGGAATGCCCGCTCCGCTGCGAGGA
CCTGTTCGGTAAGCTCGAGGACGGACCATCGGGAAAGACGCAGTCCGTGA
GGCTGCAGGTGCGAGGAGAACCGAAGAGTGGTACAGTCGCCCGAGGAGCT
TTTCCCCGACGTGGAATGCCCGCTCCGCTGCGAGGACCTGTTCGGTAAGC
TCGAGGACGGACCATCGGGAAAGACGCAGTCCGTGAGGCTGCAGGTGCGA
GGAGAACCGAAGAGTGGTACAGGTATGATAGGCGAGTGGAGCTGGGGGGC
ACTGGCCCACAAGTGCCTCTATCTGCAGAGACTCTATGGCCTGCAAAGCT
GCCGCGTCGTCTGGAAGAACGATATGGACAACGCCAACTTTCGAGTCGAA
ACCCACTCGATCATCTTCGAGCCAGAGCTGGCGGCCCAGGACAAGAGCAA
GCGCTGCACCTGTACCGGCGTCAAAAAGTATGATAGGCGAGTGGAGCTGG
GGGGCACTGGCCCACAAGTGCCTCTATCTGCAGAGACTCTATGGCCTGCA
AAGCTGCCGCGTCGTCTGGAAGAACGATATGGACAACGCCAACTTTCGAG
TCGAAACCCACTCGATCATCTTCGAGCCAGAGCTGGCGGCCCAGGACAAG
AGCAAGCGCTGCACCTGTACCGGCGTCAAAAAGGTGGAAATCACGCTCTC
CGCGGGGCGAAAGCACATGCTCCCCGTCGACCCGACGTGCCGCTGGTTTC
ACGCCCGTGGCATCACCAAGAAGGGCTTCCGGGCGTGCGAGCCATCGGAC
GGCGGGCCGGTGGAGAACCACCCCCAGCTGTGGGCGTGCGTGCAAGAGTC
CATGTGCAACATCATGGACGACAGCCTCCAGATTGCGGTGCTTCGCGACC
CGCGTGCCGTGACGGTCAGCTCCTACTTTCAGCTCGCCCGGCAGAAATCG
CCCATGCTGGACAAGGAGAAAGTAGAGTCTGTCGACCACTTTTTCATGAA
CCACCTGGACTCTATTGCTCAGTGGATCAGCCTCCGATACGTGCTATTCA
CCCAGATCATGCCGGAGAGGTCTGAGGTGTTTTGGTACGAGGACGCGGTC
GCTGATCCGATCGAGTGGCATGGGCGTTACTATAACTTCGTGGGTCTTCG
TCCTCCGCCAGGGGTGATCCACCACGCTTCAGCCATCGCCACGAAGGGTG
GGAGTATTCTGGGCTTCCCGGCCAAGGGCCTCGATTACCACCCCGATGGG
GAGGAGCAAGCGCCCACTCGAACTTTCCGAGACGAGCTAAGCGCCGAGTC
GCTCGCCATGATGGACGACGTGCTTCGCAAGTGGCTACCGCCGATCATTC
TGAGACGATTGCGCCTGATCGACTAAGGTGGAAATCACGCTCTCCGCGGG
GCGAAAGCACATGCTCCCCGTCGACCCGACGTGCCGCTGGTTTCACGCCC
GTGGCATCACCAAGAAGGGCTTCCGGGCGTGCGAGCCATCGGACGGCGGG
CCGGTGGAGAACCACCCCCAGCTGTGGGCGTGCGTGCAAGAGTCCATGTG
CAACATCATGGACGACAGCCTCCAGATTGCGGTGCTTCGCGACCCGCGTG
CCGTGACGGTCAGCTCCTACTTTCAGCTCGCCCGGCAGAAATCGCCCATG
CTGGACAAGGAGAAAGTAGAGTCTGTCGACCACTTTTTCATGAACCACCT
GGACTCTATTGCTCAGTGGATCAGCCTCCGATACGTGCTATTCACCCAGA
TCATGCCGGAGAGGTCTGAGGTGTTTTGGTACGAGGACGCGGTCGCTGAT
CCGATCGAGTGGCATGGGCGTTACTATAACTTCGTGGGTCTTCGTCCTCC
GCCAGGGGTGATCCACCACGCTTCAGCCATCGCCACGAAGGGTGGGAGTA
TTCTGGGCTTCCCGGCCAAGGGCCTCGATTACCACCCCGATGGGGAGGAG
CAAGCGCCCACTCGAACTTTCCGAGACGAGCTAAGCGCCGAGTCGCTCGC
CATGATGGACGACGTGCTTCGCAAGTGGCTACCGCCGATCATTCTGAGAC
GATTGCGCCTGATCGACTAA
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