mRNA_F-serratus_M_contig135.2616.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig135.2616.1
Unique NamemRNA_F-serratus_M_contig135.2616.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: D7FMM0_ECTSI (DNA repair protein RadA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM0_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.390e-36
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:  145 PMPRMVSWGLNSRSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRREQ 345
            PMPRMVSWGLNSRSQPSARKALGS+ KTHTIV+VCEVCGSEHVQWVGRCPTCKEWN VKPFKVRREQ
Sbjct:  111 PMPRMVSWGLNSRSQPSARKALGSNKKTHTIVYVCEVCGSEHVQWVGRCPTCKEWNCVKPFKVRREQ 177
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BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A836CK68_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK68_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.070e-25
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:  142 GPMPRMVSWGLNSRSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRRE 342
            G  PR +S+GL SRS PS RKALGS SKTH  V+VCEVCG+E VQWVGRCPTCKEWNSV+  KVRR+
Sbjct:   82 GTRPRFISYGLQSRSAPSTRKALGSGSKTHATVYVCEVCGAEQVQWVGRCPTCKEWNSVREHKVRRD 148
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BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A7S4HL01_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HL01_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.580e-17
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:  151 PRMVSWGLN-SRSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRR 339
            P M+S+GL   RS PS RKA+G S  + T VHVC  CGSE+V+W+GRCPTCKEWN+++ F+V R
Sbjct:   79 PGMMSFGLGRGRSAPSHRKAVGRSGSSSTSVHVCTNCGSEYVKWIGRCPTCKEWNTIQEFRVNR 142
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BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A7S2JRW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRW8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.010e-16
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:  157 MVSWGLNSRSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRR 339
            M S+GL  RS P+ RKA+G  +     V VC  CGSE V+W+GRCPTC+EWN+++ F VRR
Sbjct:    1 MHSFGLTGRSAPNQRKAIGKGANAKASVFVCTNCGSEFVKWLGRCPTCQEWNTIQEFSVRR 61
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BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A7S3KWX8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWX8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.390e-13
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  151 PRMVSWGLNS-RSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRREQQ 348
            P   S+G N+ RS P+ RK +G +S+  T V++C  CG+E VQW+GRCPTCKEWN++    V R QQ
Sbjct:  109 PSTASFGWNAGRSSPAQRKGMGLASRATTTVYMCTNCGAETVQWMGRCPTCKEWNTLTEHVVTRGQQ 175
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BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A448ZBY4_9STRA (RECA_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBY4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.490e-12
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  199 RKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRR 339
            RKA+G+SSKT T V+VC  CG E VQW GRCPTCKEWN+ +   V+R
Sbjct:   58 RKAMGTSSKTTTTVYVCSNCGGESVQWRGRCPTCKEWNTFQEVAVQR 104
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BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A482SXN0_9ARCH (DNA repair protein RadA n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SXN0_9ARCH)

HSP 1 Score: 67.8 bits (164), Expect = 7.580e-11
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:  133 AGVGPMPRMVSWGLNSRSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRR 339
            AG+  + R   +G+  R      KALG   K     +VCEVCG+EHV+W GRC +CKEWN++K FKV R
Sbjct:   23 AGLSKLSRKHIYGVAVRHSQLFAKALG--FKASAEAYVCEVCGTEHVKWQGRCNSCKEWNTIKAFKVAR 89
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BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A8J9TFP3_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TFP3_PHATR)

HSP 1 Score: 63.2 bits (152), Expect = 1.240e-9
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:  208 LGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRRE 342
            +G+S  +   +H+C  CGSE V+W+GRCPTC+EWN+++   VRRE
Sbjct:    1 MGTSGSSTARIHICGNCGSEFVKWMGRCPTCREWNTLQEHAVRRE 45
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BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A7S3PWA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWA8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.630e-9
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  205 ALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRR 339
            A+G S      VHVC  CG+E+VQWVG+C TC EWN+V+ ++V R
Sbjct:  134 AMGKSGSGSATVHVCTNCGAEYVQWVGKCSTCNEWNTVQEYRVGR 178
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BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: B8C2F0_THAPS (Rad51/RecA-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2F0_THAPS)

HSP 1 Score: 57.8 bits (138), Expect = 2.350e-7
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  238 VHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRRE 342
            V+VC  CGSE+VQW GRC TC EWN+V+ FK RR+
Sbjct:    2 VYVCTNCGSEYVQWRGRCGTCLEWNTVQEFKARRK 36
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMM0_ECTSI2.390e-3694.03DNA repair protein RadA n=1 Tax=Ectocarpus silicul... [more]
A0A836CK68_9STRA1.070e-2573.13P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4HL01_9STRA2.580e-1759.38Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2JRW8_9STRA2.010e-1654.10Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S3KWX8_9STRA5.390e-1350.75Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448ZBY4_9STRA6.490e-1263.83RECA_2 domain-containing protein n=1 Tax=Pseudo-ni... [more]
A0A482SXN0_9ARCH7.580e-1147.83DNA repair protein RadA n=1 Tax=archaeon TaxID=190... [more]
A0A8J9TFP3_PHATR1.240e-951.11Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S3PWA8_9STRA5.630e-953.33Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
B8C2F0_THAPS2.350e-765.71Rad51/RecA-like protein (Fragment) n=1 Tax=Thalass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig135contigF-serratus_M_contig135:729054..731515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.6e-31
Seed eggNOG ortholog2880.D7FMM0
KEGG koko:K04485
Hectar predicted targeting categoryother localisation
EggNOG free text desc.AAA domain
EggNOG OGs2QQ01@2759,COG1066@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons5
Model size350
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig135.2616.1prot_F-serratus_M_contig135.2616.1Fucus serratus malepolypeptideF-serratus_M_contig135 729054..731513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929335.2989285-CDS-F-serratus_M_contig135:729053..7290941622929335.2989285-CDS-F-serratus_M_contig135:729053..729094Fucus serratus maleCDSF-serratus_M_contig135 729054..729094 +
1690962803.753794-CDS-F-serratus_M_contig135:729053..7290941690962803.753794-CDS-F-serratus_M_contig135:729053..729094Fucus serratus maleCDSF-serratus_M_contig135 729054..729094 +
1622929335.3210206-CDS-F-serratus_M_contig135:730505..7305401622929335.3210206-CDS-F-serratus_M_contig135:730505..730540Fucus serratus maleCDSF-serratus_M_contig135 730506..730540 +
1690962803.7625473-CDS-F-serratus_M_contig135:730505..7305401690962803.7625473-CDS-F-serratus_M_contig135:730505..730540Fucus serratus maleCDSF-serratus_M_contig135 730506..730540 +
1622929335.341394-CDS-F-serratus_M_contig135:730552..7306311622929335.341394-CDS-F-serratus_M_contig135:730552..730631Fucus serratus maleCDSF-serratus_M_contig135 730553..730631 +
1690962803.7725468-CDS-F-serratus_M_contig135:730552..7306311690962803.7725468-CDS-F-serratus_M_contig135:730552..730631Fucus serratus maleCDSF-serratus_M_contig135 730553..730631 +
1622929335.3527744-CDS-F-serratus_M_contig135:730954..7310361622929335.3527744-CDS-F-serratus_M_contig135:730954..731036Fucus serratus maleCDSF-serratus_M_contig135 730955..731036 +
1690962803.7823079-CDS-F-serratus_M_contig135:730954..7310361690962803.7823079-CDS-F-serratus_M_contig135:730954..731036Fucus serratus maleCDSF-serratus_M_contig135 730955..731036 +
1622929335.3643937-CDS-F-serratus_M_contig135:731402..7315131622929335.3643937-CDS-F-serratus_M_contig135:731402..731513Fucus serratus maleCDSF-serratus_M_contig135 731403..731513 +
1690962803.7940333-CDS-F-serratus_M_contig135:731402..7315131690962803.7940333-CDS-F-serratus_M_contig135:731402..731513Fucus serratus maleCDSF-serratus_M_contig135 731403..731513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig135.2616.1

>prot_F-serratus_M_contig135.2616.1 ID=prot_F-serratus_M_contig135.2616.1|Name=mRNA_F-serratus_M_contig135.2616.1|organism=Fucus serratus male|type=polypeptide|length=116bp
SRRVPPTSARSSSSGGEIEGPYPDDHDHDAGGFKGAGGRGVAPGAGVGPM
PRMVSWGLNSRSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTC
KEWNSVKPFKVRREQQ
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mRNA from alignment at F-serratus_M_contig135:729054..731515+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig135.2616.1 ID=mRNA_F-serratus_M_contig135.2616.1|Name=mRNA_F-serratus_M_contig135.2616.1|organism=Fucus serratus male|type=mRNA|length=2462bp|location=Sequence derived from alignment at F-serratus_M_contig135:729054..731515+ (Fucus serratus male)
TCTCGACGCGTGCCGCCGACGAGCGCGAGGTCGTCCAGCAGGTATGGTCG
GCACTGAACCATTATTATAGTAACAAGACCCGTTACCGGCATCAACCGAT
ATGATACGGCTGCCAATCCTGCTATAATAGTGACCAGCAGCTGAACAGGG
GAAAATATTTTTCCCTGCCCTGTCCTCTTTCGCGCCTGAGAATTTGGTCT
CGCGAGACGGGTTCGGCCGTCCCGTGCCGCGTCAGTAGTAGTATCATGCC
ATGTAGTCGTGGGTATGCGAGGGGACAGTCGAGAGGGTGCACGTTTACCG
CCGGTACTTTCAACAGCCCACTTGATGCCAATATTAATAGTGGTTGTGGG
AAAGAGAGGCGTATATAAATTGGCTCATGGTGACTTGCCAAGGCAGCACC
TGTTTAGAACTACCCTGAGGTTTACTGGCCCTATGCCGGCGGACTCTCGG
CAGTGAACGCCATCGGGTAGGCAATTGCGCGACTCGATAAAGTCGGGACT
GACCCGATGGCGTATGGCGCTTTATAAATAAATAAATGGACGCCGCCGCG
GAACTCAAGTAAGCACCAGATTCAAGCTTAGTATGGAGATGAGCAGGCTG
ACGCGGGACGGGACTGCCGAACCTGTCTCGCGAGACCAAGTTCTCAGGCA
CGAACGCGGACAGGGGAATATCCATTTCCCCTGTTCAGCTGACCACGGGC
AGGATTGGCAACCTTACCCGGTTGATCCATACTCTTGCTATATGTGCGTG
TATATGTGTAACCATACATGTTTCCCGCCGGTACTTTCAACTTTCAACAT
GCCCACTTGATACCAATATTATTATTAGTAGATGTGGGAAAGAGAGGCGC
ATATTAATTGGTCCATGATGACCTGCCAAGGCCGCATTCGTTTGGAACTA
CCTAGATGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCCA
TCGGTACGCAATTGCGTGACCCAATAAACTCGGAACTGACCCGATGGTGA
TGGCGGTATAAATAAATAAATGGACGCCGCCGCGGAACTCGGGAGGAATC
CCTCAAGTAAGCACCAGGTTCAGCCTGAGTATGGAGATGAGCAGGCTGAC
GCGGGACGGGACTGCCGAACCCGTCTACAGTATAACGATATTATACTCTT
GACCCAATGTTACCACCATGGGGGAACCCGTTTAAATGCCATGAAGAGGT
TTTGTATTTGCAGCCTTTGATCCGACCTAAACGTTTCGACATTTTTTcCC
CCTGACTGGGGGATGCTCAGAAGGTCTAGGTACATCCTGTTTTTTCTTTA
AACATACCACATACTTTTAACACTATAACACGCACGAAACGCGACGGCTC
TCTGTTGTGCACTGCATTTCCTGGTTCACTTGCTGGTGTCGGTGTTGGGG
GTGTTGTCGCTGTCGGTGCTGACCGTGACGGTGACGGCCTTGGCGGCAAC
AGCGGGGGCGAGATCGAAGGGCCATACCCGGACGATCACGACCACGACTA
CGATCACGATGCCGGCGGATTCAAAGGAGCGGGTGGTAGAGGAGTCGCTC
CTGGAGCGGGCGTAGGTCCGATGCCTAGGTGGGCATTGGGGAGCACCACG
ATCTGTACGCCACGCTGATGATTTGGTTCCTTCCGTGCTCAGGATGGGGT
AGAACGAGACGCTTCTTTATTGAGTCTTGGCTTCTTGCATTCTGCCAGCA
CCAACTCGTGCTGTTCCTGTGACGATTTAGTGACACATGCTCACCTGAAG
CTTTTGATATCCCCCCCGGGGGTGAATGCTCAGGAGGTTTAGATGCGTTC
AGATTATTCATTAAACGCCCAAAACGTTGAAGATCTTGACTGTCGGCAAA
CAATTTCCTAGAATGTTCCAAGTCTCGGGCTGCCGGTTTTCTCTCTCGCA
GGATGGTATCGTGGGGCTTGAACTCGAGGAGCCAACCCAGCGCTAGGAAA
GCTCTCGGCAGCAGCAGCAAAACCCATACCATCGTGAGTTCGTAGGCGGA
ACCCTTTTTGCTGATTGGTTAGCTAGCCGTCCAGTGTCGTCGTGGAAAAC
TACGGGGGGAAATCAATCCTGCCAGCCTCACAACATCGCAACTCATTTCG
GGTATTCCCTACAGCTCTGTTGGAAACCCAGGGAGGACGGATGGAGCCAT
GGAGCACGAAGGTGGATGCTCAAGGTTTAGATGCGTTCATATTTTTCTTA
AACACCCATCACGGCCCACCATTGACTATTAATAATACTTCAAGCTCTTG
ACAATAGTTCAATATGTATACACGCAACAAGAGCGTTCTGTGAGTGGTTA
CGAAGCAATCGATAACTTTGAGGGTGGCGGGATCGCTTCGTCGTTCCAGG
TCCACGTCTGCGAGGTGTGCGGGTCGGAGCACGTTCAGTGGGTCGGTCGA
TGCCCGACATGCAAAGAGTGGAACTCCGTGAAGCCCTTCAAAGTGCGCCG
GGAGCAACAAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig135:729054..731515+

>mRNA_F-serratus_M_contig135.2616.1 ID=mRNA_F-serratus_M_contig135.2616.1|Name=mRNA_F-serratus_M_contig135.2616.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig135:729054..731515+ (Fucus serratus male)
TCTCGACGCGTGCCGCCGACGAGCGCGAGGTCGTCCAGCAGTCTCGACGC
GTGCCGCCGACGAGCGCGAGGTCGTCCAGCAGCGGGGGCGAGATCGAAGG
GCCATACCCGGACGATCCGGGGGCGAGATCGAAGGGCCATACCCGGACGA
TCACGATCACGATGCCGGCGGATTCAAAGGAGCGGGTGGTAGAGGAGTCG
CTCCTGGAGCGGGCGTAGGTCCGATGCCTAGACGATCACGATGCCGGCGG
ATTCAAAGGAGCGGGTGGTAGAGGAGTCGCTCCTGGAGCGGGCGTAGGTC
CGATGCCTAGGATGGTATCGTGGGGCTTGAACTCGAGGAGCCAACCCAGC
GCTAGGAAAGCTCTCGGCAGCAGCAGCAAAACCCATACCATCGATGGTAT
CGTGGGGCTTGAACTCGAGGAGCCAACCCAGCGCTAGGAAAGCTCTCGGC
AGCAGCAGCAAAACCCATACCATCGTCCACGTCTGCGAGGTGTGCGGGTC
GGAGCACGTTCAGTGGGTCGGTCGATGCCCGACATGCAAAGAGTGGAACT
CCGTGAAGCCCTTCAAAGTGCGCCGGGAGCAACAAGTCCACGTCTGCGAG
GTGTGCGGGTCGGAGCACGTTCAGTGGGTCGGTCGATGCCCGACATGCAA
AGAGTGGAACTCCGTGAAGCCCTTCAAAGTGCGCCGGGAGCAACAA
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