mRNA_F-serratus_M_contig135.2614.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig135.2614.1
Unique NamemRNA_F-serratus_M_contig135.2614.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig135.2614.1 vs. uniprot
Match: D7FMM7_ECTSI (Ubiquinone biosynthesis protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM7_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.210e-13
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = 2 
Query:  662 QVPGGKTLAQAAPNVATLAAQAFSLMASQLPHGFRSYPVPS-AVGNTSDPNSSREEPNVSSGDGSIASHPPTYPGAPERDPWSEKLAGA-----GKSGRFEDELAREELEF 976
            QVPG +TLAQ APNVA LA+QA S +ASQ+P   +  P    A G     ++S       +G  +    PPT+PGAPE+DPWS   A A     GK G+FE+ELAREE E 
Sbjct:  272 QVPGAETLAQTAPNVAALASQALSFVASQVPRAGQGPPFSGGASGPPQSASASSAATQTKTGHDTPPPLPPTFPGAPEQDPWSSTHASAAAAASGKPGKFEEELAREEREL 382
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BLAST of mRNA_F-serratus_M_contig135.2614.1 vs. uniprot
Match: A0A6H5JV38_9PHAE (Ubiquinone biosynthesis protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV38_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.940e-7
Identity = 46/111 (41.44%), Postives = 56/111 (50.45%), Query Frame = 2 
Query:  662 QVPGGKTLAQAAPNVATLAAQAFSLMASQLPHGFRSYPVPS-AVGNTSDPNSSREEPNVSSGDGSIASHPPTYPGAPERDPWSEK-----LAGAGKSGRFEDELAREELEF 976
            QVPG + LAQ APNVA LA+QA S +ASQ+P   +  P    A G                          T+PGAPE+DPWS        A +G  G+FE+ELAREE E 
Sbjct:  392 QVPGAEALAQTAPNVAALASQALSFVASQVPRAGQGPPFSGGASGPPXXXXXXXXXXXXXXXXXXXXXXXXTFPGAPEQDPWSSTHASTAAAASGTPGKFEEELAREEREL 502
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig135.2614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMM7_ECTSI3.210e-1347.75Ubiquinone biosynthesis protein n=1 Tax=Ectocarpus... [more]
A0A6H5JV38_9PHAE5.940e-741.44Ubiquinone biosynthesis protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig135contigF-serratus_M_contig135:714098..716820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue5.5e-14
Seed eggNOG ortholog2880.D7FMM7
Preferred nameCOQ9
KEGG koko:K08869,ko:K18587
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009892,GO:0009987,GO:0010605,GO:0015980,GO:0016020,GO:0016310,GO:0017144,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0019899,GO:0022900,GO:0022904,GO:0030234,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031461,GO:0031625,GO:0031966,GO:0031967,GO:0031975,GO:0032268,GO:0032269,GO:0032991,GO:0034641,GO:0042180,GO:0042181,GO:0042773,GO:0042775,GO:0042802,GO:0042803,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044389,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051246,GO:0051248,GO:0055086,GO:0055105,GO:0055106,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0072521,GO:0080090,GO:0098772,GO:1901004,GO:1901006,GO:1901135,GO:1901360,GO:1901564,GO:1901576,GO:1901661,GO:1901663,GO:1902494,GO:1903320,GO:1903321,GO:1990234
EggNOG free text desc.rpsU-divergently transcribed protein
EggNOG OGsCOG5590@1,KOG2969@2759
COG Functional cat.S
BiGG ReactioniMM904.YLR201C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Exons2
Model size1454
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig135.2614.1prot_F-serratus_M_contig135.2614.1Fucus serratus malepolypeptideF-serratus_M_contig135 714564..716198 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929335.2179925-UTR-F-serratus_M_contig135:714097..7145631622929335.2179925-UTR-F-serratus_M_contig135:714097..714563Fucus serratus maleUTRF-serratus_M_contig135 714098..714563 -
1690962803.6988509-UTR-F-serratus_M_contig135:714097..7145631690962803.6988509-UTR-F-serratus_M_contig135:714097..714563Fucus serratus maleUTRF-serratus_M_contig135 714098..714563 -
1622929335.2590303-UTR-F-serratus_M_contig135:716198..7168201622929335.2590303-UTR-F-serratus_M_contig135:716198..716820Fucus serratus maleUTRF-serratus_M_contig135 716199..716820 -
1690962803.7456732-UTR-F-serratus_M_contig135:716198..7168201690962803.7456732-UTR-F-serratus_M_contig135:716198..716820Fucus serratus maleUTRF-serratus_M_contig135 716199..716820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929335.2309325-CDS-F-serratus_M_contig135:714563..7147931622929335.2309325-CDS-F-serratus_M_contig135:714563..714793Fucus serratus maleCDSF-serratus_M_contig135 714564..714793 -
1690962803.7259026-CDS-F-serratus_M_contig135:714563..7147931690962803.7259026-CDS-F-serratus_M_contig135:714563..714793Fucus serratus maleCDSF-serratus_M_contig135 714564..714793 -
1622929335.2434812-CDS-F-serratus_M_contig135:716062..7161981622929335.2434812-CDS-F-serratus_M_contig135:716062..716198Fucus serratus maleCDSF-serratus_M_contig135 716063..716198 -
1690962803.7363234-CDS-F-serratus_M_contig135:716062..7161981690962803.7363234-CDS-F-serratus_M_contig135:716062..716198Fucus serratus maleCDSF-serratus_M_contig135 716063..716198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig135.2614.1

>prot_F-serratus_M_contig135.2614.1 ID=prot_F-serratus_M_contig135.2614.1|Name=mRNA_F-serratus_M_contig135.2614.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MPRDFLTTAVDIFQVPGGKTLAQAAPNVATLAAQAFSLMASQLPHGFRSY
PVPSAVGNTSDPNSSREEPNVSSGDGSIASHPPTYPGAPERDPWSEKLAG
AGKSGRFEDELAREELEFVWR*
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mRNA from alignment at F-serratus_M_contig135:714098..716820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig135.2614.1 ID=mRNA_F-serratus_M_contig135.2614.1|Name=mRNA_F-serratus_M_contig135.2614.1|organism=Fucus serratus male|type=mRNA|length=2723bp|location=Sequence derived from alignment at F-serratus_M_contig135:714098..716820- (Fucus serratus male)
GCCGTCACGTCGAGCGCGAGCCGCAACCGTGCAGGATTGGTGCGGAGTCA
GTCGTTACGCAGGAGAAATGTGCAATCTCGGTAGGTGTTGAGCGTCCGTT
TTCAAGGCGATAACCCCTGGGTTGACATAGTCGCGTGACTAGGTTGCTTC
ACGTTGAAAAATGGACATGATGTGTGTTTTGTTGTCTAGAAAAAAACTGC
CACGAACACCACAATAATATATCCGGGACACTCCCCCAGCCACAAACTGG
TATCTCGGCGGATCCCTTAACAAACAGTGCTCTGCTCGCGGCGAGATCCG
AACTCATGATTTGTGCATTAGTTTCCAAGCGCTAACCCCTGGGCTACAGA
GCCACTTGCTTGACTTGGTAGCCTTAGGGGTTATCGCGTTGAAAACGGGC
AAGAGATGTACGAAAATTCCCGAAAAACATGATTTTACAAGGTAACCTCG
CAGAATGCTGGGGCAAACCAACCTAGAGCCATACCAGTATCAGGTTTAGC
GCACACAGCAGTACCATCGACTTCCAATAATCAATGACATTGAGTCATAT
ACAGTAGCTTTATTTTTGAAGGCCCTATCGGAGCGCTATTGGATACCACA
ACTCGGAATCGCCGCCTAAGCCATGCCGCGCGACTTCTTAACGACCGCTG
TCGACATTTTTCAGGTTCCCGGCGGTAAAACTCTTGCCCAGGCGGCTCCG
AACGTGGCGACTTTGGCGGCGCAGGCGTTTTCCTTGATGGCCTCGCAGTT
GCCTCACGGTGAGTTGGTGTTATGTTTTCCTGCCTGAGTGTAGCACTGTA
CGCTGGAGAGTTCATGTAACTTATGGTATGCCTTTGCATTTGCGCAACAC
AACTGCTGAAGTTGCTCAGCTTTGGGGGTAATTCGCTTGGATGCAAATAC
ATGAATGCATCCAAACCTATGATACCTTAGCTGTAGCACCGTCGAACCGT
AGACGGGTGTCGAAGCCTTTGGTTCGGAGAAACCTGAGCTGTTAGAACAA
AAAGCCAGCATCTTGTCGGGTTCCCCAATATTTGCCGCATAGGGTCAACA
GTATAATGTCTAATATCGAGAAGAGTAGAAAACCGCCGTTATTCTACTGT
GCACTTTCACCTATCGCCATGTAGGCACTGTACACTTACACTTAGCACCA
TGTAGGGTCTGCACTCTTGCACCAAAACAGGAACGCAAAAAAAACACCAT
TATACCACTGTACACTTACAGTTATCGCCGTATTGAGACTGTACACTTAC
ACCAAAACGGGAACGCAGAGAAGCCCGCCTTCATATAACTATTCACTTAC
ACCAAAACGGGAACGCAAAGAAGCCCGCCTTCATATAACTATTCACTGTT
TTATTCCTACGTAACAAAAGAAAAATGATGTTATCACGACATGTCGAAAT
TCTCCTCCCGATGAAACCTTTGGAACCTTCGATGCCATCACATTACATTG
CATTCGCTATTTTTCACGACACATTATAACATCGACTGTTGTCGTTTGCA
GCGCGATACAGTCTATAAAGCTATGCTCTTGATGATCTCTGATGGCATGC
AAATCGACCTCAAGCGTAGCAGGTTGTTCCCCTATGGTGCAGTACGTGTA
CCCTAGCCGGAAAGATGACTGTGCATGACACACCCACCCTCCTGCATCGC
CTCCACAGCGCGAGAAACACTGACGTCGCAGCCCACGTCGCAGAAACGTC
TCCAAGCCGCATACTGTTGTCTCTGATTGCCTCGTCTCGGAAAAACTTGA
AGTGAGATACCCATACCTGCCCATGAAATATACGAAGTGCAACAAATAAT
ACATATAAATATGTAGGGGGTGTTCTATACACCGTCAAGCGCGGTAAAAA
AAGGTATGATTGTTTTCACTGTCAAATACAATAAACCACCCTCGTCTCGT
GTTATCTTTTGGCGAGGATTGCCCCACCAGGCGAAAACGCGAGCGTTACC
AAGCTTACCCCAACCGCCGACCCACTTCATGACTCCTCATGGTACTCCTG
ATACCTTCCCCCCCCCCCACTCTGCAGGTTTTCGCTCTTACCCAGTACCA
TCTGCGGTCGGTAACACGTCGGACCCAAACAGTTCCCGCGAGGAACCGAA
CGTTAGCTCCGGTGATGGCTCGATAGCGAGCCACCCGCCTACTTATCCTG
GAGCTCCAGAGCGCGACCCCTGGAGCGAAAAGCTTGCGGGAGCTGGGAAA
TCGGGGAGGTTTGAAGACGAGCTAGCTCGCGAGGAGCTAGAATTTGTTTG
GCGGTAAAAAGATAGATGGGGCGGGCTCGGAAGGCAAGGGCGGTGTTTCC
AGTAAGTAGGGTCTCGGGGAAAACTGCGTGCGGGATTTCTGAGTACACTG
CTTGTTTAGGAAAGATTTCTGTTGGTGAGGCATTCAGGAGTTGAAGGTGT
GGTGCATTATTGCGAATCAGACGATGCGAAGTAGACTGCTGCTGCCTGAC
CGCAGGCAAACTCTGTACTATGGACGTGCCCTCTGCTATCAATACCTCGA
ACTAATAGAGCTATGCCATCCTTCTTACTGTAATTATGTCGTGCTGAGCC
TGGCCTGGATGTTTTCACCGCGATTGTTTCCCCTCTCGATGCGCGCATCC
TCGATACATTTTATAGTTTTTGCGAGGGTCGTTACCGCTTTTAGTTGTGA
TCAAGGCTCTCCAAGCTTCCTGTCCGAGTCATAGAGGTCAGAACGGTTGT
TCAATGTGAAAACAACCAGGACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig135:714098..716820-

>mRNA_F-serratus_M_contig135.2614.1 ID=mRNA_F-serratus_M_contig135.2614.1|Name=mRNA_F-serratus_M_contig135.2614.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig135:714098..716820- (Fucus serratus male)
ATGCCGCGCGACTTCTTAACGACCGCTGTCGACATTTTTCAGGTTCCCGG
CGGTAAAACTCTTGCCCAGGCGGCTCCGAACGTGGCGACTTTGGCGGCGC
AGGCGTTTTCCTTGATGGCCTCGCAGTTGCCTCACGATGCCGCGCGACTT
CTTAACGACCGCTGTCGACATTTTTCAGGTTCCCGGCGGTAAAACTCTTG
CCCAGGCGGCTCCGAACGTGGCGACTTTGGCGGCGCAGGCGTTTTCCTTG
ATGGCCTCGCAGTTGCCTCACGGTTTTCGCTCTTACCCAGTACCATCTGC
GGTCGGTAACACGTCGGACCCAAACAGTTCCCGCGAGGAACCGAACGTTA
GCTCCGGTGATGGCTCGATAGCGAGCCACCCGCCTACTTATCCTGGAGCT
CCAGAGCGCGACCCCTGGAGCGAAAAGCTTGCGGGAGCTGGGAAATCGGG
GAGGTTTGAAGACGAGCTAGCTCGCGAGGAGCTAGAATTTGTTTGGCGGT
AAGTTTTCGCTCTTACCCAGTACCATCTGCGGTCGGTAACACGTCGGACC
CAAACAGTTCCCGCGAGGAACCGAACGTTAGCTCCGGTGATGGCTCGATA
GCGAGCCACCCGCCTACTTATCCTGGAGCTCCAGAGCGCGACCCCTGGAG
CGAAAAGCTTGCGGGAGCTGGGAAATCGGGGAGGTTTGAAGACGAGCTAG
CTCGCGAGGAGCTAGAATTTGTTTGGCGGTAA
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