mRNA_F-serratus_M_contig1346.2575.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1346.2575.1
Unique NamemRNA_F-serratus_M_contig1346.2575.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1346.2575.1 vs. uniprot
Match: D8LBM5_ECTSI (Similar to 20S proteasome alpha5 subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM5_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 4.760e-128
Identity = 198/256 (77.34%), Postives = 223/256 (87.11%), Query Frame = 1 
Query:   13 VHVEAVTHVRRKAPVREKKAYDTNVRGFSPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDID-ACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFHGYDKDGKP-RSSKEEADGG--AMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKKVLGD-EFCEDRLEMVCVDLSEG 765
            + V +V HVRRKAPVREKKAYDT+VR FSPDGSIYQ+EYA++AADKGGLTIGVQTD+GLVLAA GRRRSPLLK+SSV KI D+D   + CAMSGLLPDGR+L+DYARTWVQEHRFEFDEAPSVEAVAS LS+LALKF+GYDKDGK     +EE DGG  AM+RPVGVALLMAGVDRG+RPVLYHLDPSGAY+QWRA+AIG+KGAAAEA LE  GP+  M+VRRAM  VL VL++VLGD EF  DRLEMVCVD+  G
Sbjct:   16 LRVRSVAHVRRKAPVREKKAYDTSVRAFSPDGSIYQVEYAVEAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGPAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCVDMMGG 271
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BLAST of mRNA_F-serratus_M_contig1346.2575.1 vs. uniprot
Match: A0A1Y2BW89_9BASI (Proteasome subunit alpha type (Fragment) n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2BW89_9BASI)

HSP 1 Score: 181 bits (458), Expect = 4.880e-52
Identity = 102/231 (44.16%), Postives = 146/231 (63.20%), Query Frame = 1 
Query:   64 KKAYDTNVRGFSPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKF-HGYDKDGKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGK-MTVRRAMVVVLQVLKKVLGDEFCEDRLEMVCV 750
            +  YD +V  FSP+G ++Q+EYAI+A   G  T+G+QT QG+VLA + R +SPLL S SV KI +ID+ ++CAMSGL  D R +V++AR   Q H F +DE   VE+V   +  LAL+F  G D+        EEA   +M+RP GVALL+AG D+   P LYH DPSG +M++ AKAIG     A+  L+    Y K MT+  A V+ L+VLK+V+ ++   + +++  V
Sbjct:    4 RSEYDRSVSSFSPEGRLFQVEYAIEAIKLGSTTVGIQTSQGVVLAVEKRTQSPLLDSDSVEKIMEIDSHVACAMSGLTADARTMVEHARVTSQNHSFTYDEPIKVESVTQAVCDLALRFGEGADE--------EEA---SMSRPFGVALLIAGYDQSGGPQLYHADPSGTFMRYDAKAIGSGSEGAQNELQDS--YNKSMTLEEAQVLALKVLKQVMEEKLDHNNVQLAQV 221
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BLAST of mRNA_F-serratus_M_contig1346.2575.1 vs. uniprot
Match: UPI001C7A0D83 (proteasome component pup2 n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7A0D83)

HSP 1 Score: 179 bits (455), Expect = 1.290e-51
Identity = 98/234 (41.88%), Postives = 150/234 (64.10%), Query Frame = 1 
Query:   64 KKAYDTNVRGFSPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFHGYDKDGKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKKVLGDEFCEDRLEMVCVDLSEG 765
            +  YD  V  FSP+G ++Q+EYAI+A   G  T+G++TDQG+VLA + R +SPL++SSS+ KI +ID  + CAMSGL  D R ++D+AR   Q H F +DE   VE+V   +  LAL+F     D       E+A    M+RP GVALL+AG+D    P LYH DPSG +++++AKAIG    AA+A L++   Y +MT++ A ++ ++VLK+V+ ++  +  +++  V   +G
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTTLGIRTDQGVVLAVEKRVQSPLIESSSIEKIMEIDRHLGCAMSGLTADARTMIDHARVTAQNHSFTYDEKIKVESVTQAVCDLALRFGESVHD-------EDA---MMSRPFGVALLIAGIDEVG-PQLYHTDPSGTFVRYQAKAIGSGSEAAQAELQEKW-YSQMTLQEANILAMRVLKQVMEEKLDQHNVQLAQVTPQKG 226
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BLAST of mRNA_F-serratus_M_contig1346.2575.1 vs. uniprot
Match: A0A1D1XX99_9ARAE (Proteasome subunit alpha type (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XX99_9ARAE)

HSP 1 Score: 179 bits (455), Expect = 1.500e-51
Identity = 101/230 (43.91%), Postives = 140/230 (60.87%), Query Frame = 1 
Query:   64 KKAYDTNVRGFSPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFHGYDKDGKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGK-MTVRRAMVVVLQVLKKVLGDEFCEDRLEMVCV 750
            +  YD  V  FSP+G ++Q+EYAI+A   G   +G+QT +G+VLAA+ R  SPLL SSS+ KI +ID  + CAMSGL  D R ++D+AR   Q HRF +DEA  VE+V   +  LAL+F              E +   M+RP GVALL+AGVD  N P L+H DPSG + Q+ AKAIG     A+  LE  G Y K +T+ +A  + L+VLK+V+ ++     +E+  V
Sbjct:   10 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTSEGVVLAAEKRVTSPLLVSSSIEKIMEIDKHLGCAMSGLTADSRTMIDHARVAAQSHRFTYDEAIKVESVTQAVCDLALRF----------GESAEGEESIMSRPFGVALLIAGVDE-NGPQLFHADPSGTFTQFDAKAIGSGSEGAQTELE--GEYHKSITLEKAETLSLRVLKQVMEEKLNNTNVELASV 226
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BLAST of mRNA_F-serratus_M_contig1346.2575.1 vs. uniprot
Match: A0A1Q3E886_LENED (Proteasome subunit alpha type n=4 Tax=Omphalotaceae TaxID=72117 RepID=A0A1Q3E886_LENED)

HSP 1 Score: 179 bits (455), Expect = 2.460e-51
Identity = 99/234 (42.31%), Postives = 148/234 (63.25%), Query Frame = 1 
Query:   64 KKAYDTNVRGFSPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFHGYDKDGKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKKVLGDEFCEDRLEMVCVDLSEG 765
            +  YD  V  FSP+G ++Q+EYAI+A   G  T+GV+TD+G+VL  + R +SPL++SSS+ KI +IDA + CAMSGL  D R ++D+AR   Q H F +DE   VE+V   +  LAL+F     D       E+A    M+RP GVALL+AG+D    P LYH DPSG +++++AKAIG    AA+A L+    + KMT+R A ++ L++LK+V+ ++     +++  V  + G
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTTVGVRTDEGVVLGVEKRVQSPLIESSSIEKIMEIDAHLGCAMSGLTADARTMIDHARVTAQNHSFTYDEKIKVESVTQAVCDLALRFGESVHD-------EDA---MMSRPFGVALLIAGIDELG-PQLYHTDPSGTFVRYQAKAIGSGSEAAQAELQDKW-HSKMTLREAQLLTLRILKQVMEEKLDRHNVQLAQVTKANG 226
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BLAST of mRNA_F-serratus_M_contig1346.2575.1 vs. uniprot
Match: E9HGR7_DAPPU (Proteasome subunit alpha type n=8 Tax=Mandibulata TaxID=197563 RepID=E9HGR7_DAPPU)

HSP 1 Score: 179 bits (453), Expect = 2.570e-51
Identity = 98/230 (42.61%), Postives = 141/230 (61.30%), Query Frame = 1 
Query:   64 KKAYDTNVRGFSPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFHGYDKDGKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGK-MTVRRAMVVVLQVLKKVLGDEFCEDRLEMVCV 750
            +  YD  V  FSP+G ++Q+EYAI+A   G   IG+QT +G+VLA + R  SPL++ +++ KI +ID  I CA+SGL+ D R +VD AR   Q H F +DE  SVE+VA  +S LA++F   D DG            AM+RP GVA+L AG+D    P L+H+DPSG Y+Q+ AKAIG     A+  L++   Y K MT++ AM   L +LK+V+ ++     +E+  V
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVVLAVEKRITSPLMEPTTIEKIVEIDKHIGCAVSGLMADSRTMVDRARVEAQNHWFTYDEKMSVESVAQAVSNLAIQFGDSDDDGN-----------AMSRPFGVAILFAGIDE-KGPQLFHMDPSGTYVQYDAKAIGSGSEGAQQSLQEA--YNKSMTLKSAMKAALTILKQVMEEKLSSTNVEVAAV 220
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BLAST of mRNA_F-serratus_M_contig1346.2575.1 vs. uniprot
Match: A0A1X6NLH8_PORUM (Proteasome subunit alpha type n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLH8_PORUM)

HSP 1 Score: 179 bits (453), Expect = 2.810e-51
Identity = 101/234 (43.16%), Postives = 139/234 (59.40%), Query Frame = 1 
Query:   64 KKAYDTNVRGFSPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFHGYDKDGKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKKVLGDEFCEDRLEMVCVDLSEG 765
            +  YD  V  FSP+G ++Q+EYAI+A   G   +G+ T +G++LA + R  SPLL  SS+ K+ +ID  I  AMSGL  D R L+D+ R   QEHRF +DE  SVE+    L  LAL+F    +DG+     + AD  AMARP GVALL+AGVD    P LYH DPSG Y++W AKAIG     A+  L++    G MT+  A  + L+ LK V+ ++   + +E+  V    G
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGICTTEGVILAVEKRLTSPLLTPSSIEKVLEIDTHIGAAMSGLTADARTLIDHGRIVTQEHRFTYDEPLSVESTTQSLCDLALRF---GEDGRD----DGAD--AMARPFGVALLIAGVDDEGGPALYHTDPSGTYVKWMAKAIGAGSEGAQTALQEAWSAG-MTLAEAEGLALKTLKAVMEEKVSGENVEVAAVTAESG 228
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BLAST of mRNA_F-serratus_M_contig1346.2575.1 vs. uniprot
Match: L8GES1_ACACA (Proteasome subunit alpha type n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GES1_ACACA)

HSP 1 Score: 179 bits (453), Expect = 3.560e-51
Identity = 101/228 (44.30%), Postives = 141/228 (61.84%), Query Frame = 1 
Query:   73 YDTNVRGFSPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFHGYDKDGKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGK-MTVRRAMVVVLQVLKKVLGDEFCEDRLEMVCVD 753
            YD  V  FSP+G ++Q+EYAI+A   G   IG+QT +G++LA + R  SPLL+ SSV KI +IDA I  AMSGL  D + L+DYAR   Q H F FDE  SVE+    +  LAL+F      G+ R S++     AM+RP GVALL+AGVD  N P L+H DPSG ++Q+ AKAIG     A++ L+    Y K +T++ A  + L  LK+V+ ++     +E+  V+
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVILAVEKRLTSPLLEPSSVEKIMEIDAHIGAAMSGLTGDAKTLIDYARVEAQNHTFTFDEPMSVESCTQAICDLALRF------GEDRKSEK-----AMSRPFGVALLVAGVDSENGPALFHTDPSGTFVQYEAKAIGAGSEGAQSTLQD--KYSKSITLKEAEKLALHTLKQVMEEKISAVNVEIASVE 222
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BLAST of mRNA_F-serratus_M_contig1346.2575.1 vs. uniprot
Match: F6Z491_CIOIN (Proteasome subunit alpha type n=3 Tax=Ciona TaxID=7718 RepID=F6Z491_CIOIN)

HSP 1 Score: 178 bits (452), Expect = 3.630e-51
Identity = 94/229 (41.05%), Postives = 138/229 (60.26%), Query Frame = 1 
Query:   64 KKAYDTNVRGFSPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFHGYDKDGKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKKVLGDEFCEDRLEMVCV 750
            +  YD  V  FSP+G ++Q+EYAI+A   G   IG+QT  G+VLA + R  SPL+++SS+ K+ +ID  + CAMSGL+ D + ++D AR   Q H F FDE   V+++   +S LAL+F            +E+++ GAM+RP GVALL AG D G  P LYHLDPSG ++   AKAIG     A+  LE+   +  MT+  A   +L +LK+V+ ++     +E+  V
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTADGVVLAVEKRITSPLIEASSIEKVFEIDTHVGCAMSGLIADSKTMIDRARVEAQNHWFTFDEKMRVQSITKAVSNLALQF-----------GEEDSEPGAMSRPFGVALLFAGYDEGLGPQLYHLDPSGTFVSCSAKAIGSASEGAQTSLEEQF-HKSMTIEEAQKSILTILKQVMEEKLTSTNVEVATV 221
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BLAST of mRNA_F-serratus_M_contig1346.2575.1 vs. uniprot
Match: A0A5J4Z0C5_PORPP (Proteasome subunit alpha type n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0C5_PORPP)

HSP 1 Score: 178 bits (452), Expect = 4.470e-51
Identity = 99/227 (43.61%), Postives = 144/227 (63.44%), Query Frame = 1 
Query:   64 KKAYDTNVRGFSPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFHGYDKDGKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGK-MTVRRAMVVVLQVLKKVLGDEFCEDRLEM 741
            +  YD  V  FSP+G ++Q+EYAI+A   G   IG++T+QG+VLA + R  SPLL+  SV K+  ID+ I CAMSGL  D R L+D+AR   Q HRF +DE   +++ A  +  LAL+F    +DGK      E D  AM+RP GVALL+AG+D G +P L H DPSG Y++W AKAIG     A+  L++   + K +T++ A V+ L+ LK+V+ ++  +  +E+
Sbjct:   11 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTEQGVVLAVEKRLTSPLLEPRSVEKLVVIDSQIGCAMSGLTADARTLIDHARVETQSHRFTYDEPMQIDSCAQAICDLALQF---GEDGK------EED--AMSRPFGVALLIAGIDVGGKPSLIHTDPSGTYVKWDAKAIGAGSEGAQTALQEA--FSKTLTLQEAEVLALRTLKQVMEEKLNKTNVEI 224
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1346.2575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBM5_ECTSI4.760e-12877.34Similar to 20S proteasome alpha5 subunit n=2 Tax=E... [more]
A0A1Y2BW89_9BASI4.880e-5244.16Proteasome subunit alpha type (Fragment) n=1 Tax=L... [more]
UPI001C7A0D831.290e-5141.88proteasome component pup2 n=1 Tax=Marasmius oreade... [more]
A0A1D1XX99_9ARAE1.500e-5143.91Proteasome subunit alpha type (Fragment) n=1 Tax=A... [more]
A0A1Q3E886_LENED2.460e-5142.31Proteasome subunit alpha type n=4 Tax=Omphalotacea... [more]
E9HGR7_DAPPU2.570e-5142.61Proteasome subunit alpha type n=8 Tax=Mandibulata ... [more]
A0A1X6NLH8_PORUM2.810e-5143.16Proteasome subunit alpha type n=1 Tax=Porphyra umb... [more]
L8GES1_ACACA3.560e-5144.30Proteasome subunit alpha type n=1 Tax=Acanthamoeba... [more]
F6Z491_CIOIN3.630e-5141.05Proteasome subunit alpha type n=3 Tax=Ciona TaxID=... [more]
A0A5J4Z0C5_PORPP4.470e-5143.61Proteasome subunit alpha type n=1 Tax=Porphyridium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1346contigF-serratus_M_contig1346:250550..255005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score381.7
Seed ortholog evalue3.3e-103
Seed eggNOG ortholog2880.D8LBM5
Preferred namePSMA5
KEGG koko:K02729,ko:K12388
KEGG TC9.A.63.1.3
KEGG Pathwayko03050,ko04142,ko04722,ko04979,map03050,map04142,map04722,map04979
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0030141,GO:0030163,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0060205,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904813,GO:1905368,GO:1905369
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0176@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Exons5
Model size967
Cds size966
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1346.2575.1prot_F-serratus_M_contig1346.2575.1Fucus serratus malepolypeptideF-serratus_M_contig1346 250551..255005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.7177126-CDS-F-serratus_M_contig1346:250550..2509511622929324.7177126-CDS-F-serratus_M_contig1346:250550..250951Fucus serratus maleCDSF-serratus_M_contig1346 250551..250951 -
1690962799.4644463-CDS-F-serratus_M_contig1346:250550..2509511690962799.4644463-CDS-F-serratus_M_contig1346:250550..250951Fucus serratus maleCDSF-serratus_M_contig1346 250551..250951 -
1622929324.7331161-CDS-F-serratus_M_contig1346:251800..2520361622929324.7331161-CDS-F-serratus_M_contig1346:251800..252036Fucus serratus maleCDSF-serratus_M_contig1346 251801..252036 -
1690962799.4742641-CDS-F-serratus_M_contig1346:251800..2520361690962799.4742641-CDS-F-serratus_M_contig1346:251800..252036Fucus serratus maleCDSF-serratus_M_contig1346 251801..252036 -
1622929324.7491372-CDS-F-serratus_M_contig1346:252430..2526391622929324.7491372-CDS-F-serratus_M_contig1346:252430..252639Fucus serratus maleCDSF-serratus_M_contig1346 252431..252639 -
1690962799.4815264-CDS-F-serratus_M_contig1346:252430..2526391690962799.4815264-CDS-F-serratus_M_contig1346:252430..252639Fucus serratus maleCDSF-serratus_M_contig1346 252431..252639 -
1622929324.7622876-CDS-F-serratus_M_contig1346:254675..2547571622929324.7622876-CDS-F-serratus_M_contig1346:254675..254757Fucus serratus maleCDSF-serratus_M_contig1346 254676..254757 -
1690962799.4936717-CDS-F-serratus_M_contig1346:254675..2547571690962799.4936717-CDS-F-serratus_M_contig1346:254675..254757Fucus serratus maleCDSF-serratus_M_contig1346 254676..254757 -
1622929324.7731495-CDS-F-serratus_M_contig1346:254967..2550051622929324.7731495-CDS-F-serratus_M_contig1346:254967..255005Fucus serratus maleCDSF-serratus_M_contig1346 254968..255005 -
1690962799.5034168-CDS-F-serratus_M_contig1346:254967..2550051690962799.5034168-CDS-F-serratus_M_contig1346:254967..255005Fucus serratus maleCDSF-serratus_M_contig1346 254968..255005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1346.2575.1

>prot_F-serratus_M_contig1346.2575.1 ID=prot_F-serratus_M_contig1346.2575.1|Name=mRNA_F-serratus_M_contig1346.2575.1|organism=Fucus serratus male|type=polypeptide|length=322bp
TKRYVHVEAVTHVRRKAPVREKKAYDTNVRGFSPDGSIYQIEYAIQAADK
GGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLP
DGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFHGYDKDGKPR
SSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIG
EKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKKVLGDEFCEDRLEMVCV
DLSEGDTDLGEIASLSVESRQHNSQVVVDEGRSTAALDYINRFDAIDAIG
TWDRSKGLEEVDKHGGGRITLP
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mRNA from alignment at F-serratus_M_contig1346:250550..255005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1346.2575.1 ID=mRNA_F-serratus_M_contig1346.2575.1|Name=mRNA_F-serratus_M_contig1346.2575.1|organism=Fucus serratus male|type=mRNA|length=4456bp|location=Sequence derived from alignment at F-serratus_M_contig1346:250550..255005- (Fucus serratus male)
ACAAAACGTTATGTTCACGTCGAGGCGGTGACACACGTGTGAGTTACCGT
TAATGGCCATCTTGACACGGACGTCAATGTATTGCTAGTCAAGTACGACG
TTTTACTCGATGAACAACAGTTAAATAGTACAACGACAAGTACTTGAACT
GTACGAACAAACAGACAGCTGGCAGTTGTCAGCGTCACCACAGCTTTATC
GCTTTCTTCGCGATGCCCCACGCTGTACCCACACCATTGGCGTACCAGGC
GAAGAAAAGCACCAGTGCGAGAGAAGAAGGCGTATGACACGAACGTGAGG
GGGTTTTCTCCCGACGGGAGCATCTATCAGGTACGTATCGTACAAATACT
ATGTCAATATGTAGAAATTCAAGGACTACCTGTCCTAGTCCTGTACAAAT
ATACTCTGGAGGTTTCAACCCTTTGACCCAACCGCGCTGTATTTATCGAA
AAATCTTAACTCATCCATCCATACCTTCCTATAATAGCATCCACAACTCC
TGACTGGAGGATGCTCAGAAGGTATAGGCGCGTTCCGGTTTTTCTTGAAA
CTCTCTGCGGCGAACACCATCAGTGCACAATTGCTTGACCCAATAGACTT
AAGGCTGGCCCGCTGACGGTTGGTGATATGGATGGATGCCGTAGCGGAAA
GCGGGCACCAGATTCAGCCTGGGATTGGAGAATGAGCGGGCTGACACGGG
ACAGCAGACCGGCCTGACCTGTCTCGCGAGACTAATTTCTCAGGCGCGAA
CGGGGACAGGAAAAAAAACAAATTAAAATAATTTTCTCTGTCCAGCTGAC
CACGAGAAGGATGGACAGTCATACCCGGTTGATACCCAGTCTACTAAATG
TGATGGACCATACATATCGTCCCAGAGCAATCGTCCTGAAGCGTTTGGAA
GGAACAATGACTTTTAGAAAGATAGTATAATAACAGCAGATACGACGTGT
ACGATGAAATCCTCTACCTCTCTTTTCTTGAAAGCAGGTGCGACGTCGCT
CTCACGTGTAGCTACTGCCATCTCACTACTGTAACGTTTTGTTATATCTA
CAAAAGGTTTTCCGAAAGCTTTGAGCACCTCGTAAAGAGCTGTACTATTA
TAATGCACAGCTGTAGTATTAATCATTTAAAGAAAAATCTGAATTCAGCA
GTGTGTGTATGGTCACACATATAGCAAGAGTATGGATCAACCTAGTAAGG
TTGCCAATCCTGGTTCAGCTGAACAGGAAAAAGAACATTCCCCTGTCCGC
GTTCGTGTCTGAAAATTTGGTCTCGCGAAAAATCAGCCTGCTCATCTCCA
TACTCAGGCTGAATCTGGTGCTTACTTACAGTATGTATGTTTGGTCATGA
TAATCCAAGAGAAAATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGTGT
GTCAGCTGAACAGGGAAGAAAATTAATATTTCCCTGTCCCCGTTCGCGCC
TGAGAATTTGGTCTCGCGAGACAGGTTCGGCAGTCTCGTCCCGCGTCAGC
CTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACGTTCGAGATTCC
TCCCGAATTCCGCGGCGGCGTCCATTTATTTTTTTAAACCGCTATACGCC
ATCGGCTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACCGATGGCG
TTCACTGCCGAGAGTCCGCCGACACAGGGCCAGTAAACCTCAAGGCAGTT
CCAAGCGGGTGCTTGCCTTGGCAGGTCACCATGGACCAATAATTAATATG
CGCCTCTTTTTTCCCCACCCACTGTTGGTATGAAGCGGACATGTTAAAAG
TACCGGCGAAGTATAATAGATCAACTACAACGTGCGTACCCATAGTTAGA
GAGAGTCAAGCAGGGACGCACTGGCGCGGGTTCTTGTGGACACCGGTATT
AATAGTTAGTTCTCAATTATGTACCACACGACGTACAGCAATGCACAGCT
ACCGTTCGTACCGTAGTTGATCGGTGTTTTGCCCGTGCTTCGTTGACATA
TACTGGTAAATAGTACTCTAGCTTGGGGGTTAGGGGGGGGGGGCATTTGA
TGTTTCGGACGCCCCACAAATTCGGGAAAAGCTGGAGCATCGTTCAACAT
TTTTACAGAAGCAAAAATACCATCACTATAACAAATCATAAAAATTGCCC
TGCATACTGGAGACGTGGTAAGCCGGTCTTTCGTGGTAAACCGGTCTTTT
GTGGTAAGCCGGTCTTTCCTGGGCACTTTACTTCATGCGTTGTTCGAAAT
TGCTTTGCGTGACGAGTACCATGTTAAGGAATCGTCTCACTTCGAGTTCG
CCGATCGATCGAAGTTCAACTTTGTACTGACGGAAAACACCCTCCTCCTT
CTCGACTACTTTACAGATCGAATACGCCATCCAGGCCGCAGATAAGGGAG
GCCTGACGATCGGCGTGCAGACGGACCAGGGACTCGTGCTCGCGGCGCAG
GGTCGACGACGCTCACCGCTGCTGAAGAGCTCGTCGGTGTTCAAGATCAA
CGACATAGACGCCTGCATCTCCTGTGCCATGTCTGGGCTCCTCCCGGACG
GTCGTATGTTGGTCGACTACGCGCGGTAAGTCTGTTGACGATGCCCGAAG
TATGGAACACATAGGGAACATGGTAGCTGGCGGCAATTCGTCCCGCTCAT
GGAAAAGAAGTGGTCTGAGGTGTTTGGGGTGCTAACCTCCACAAGAGTAG
CACTTGCAGTCATCATAATAGTAATATTGATCGGTTTTCTAACCGGGAAT
CGGTTTGACAGAAGATGTCATCGATGAAACCGTCGAGTGTTAAGGGTGAA
GTTGACCTATTTGAGTACCAGCATGTGTTTGCCTGCGTCGACTGCGCCGT
AATGCGCAATCATCACTCTCAAATGCAACTCCACGCCGCGCTCCTCCTTC
GGGTTGCAGTTTTAACGAAGCCACGTATCACGGTCCGTGTTTGGTTCTCG
TGCAACAAATACTGAACAGCACGTGGGTACAAGAGCACCGTTTTGAGTTC
GACGAGGCTCCAAGCGTGGAAGCGGTGGCATCGCACCTGAGCCAGCTCGC
CCTCAAGTTTCACGGCTACGACAAAGACGGGAAGCCGCGTAGCAGCAAGG
AAGAGGCAGATGGTGGCGCGATGGCGAGGCCAGTAGGCGTAGCGTTGCTG
ATGGCGGGAGTCGACCGTGGAAACCGTCCGGTACTTTATCACCTCGATCC
GTCAGGTAAATGCATTGGTTCGGTGATACCTTGCCGCAGGTTGTTCCGGT
TCGGTTTTCTTGCAAACGAAAACGTCTTGATGATTACATTACATTGCATT
GGATACGCAATGCTCAAATGACTCAGAGGCTGGATAGGTACCGTTGTAAT
TGCAATCTACTGTGCATTGATCAAGCCACACCTACTTAAAGTGAGGTACA
ACCAAACGAAAACTATTAATAACTCTGTATAGTATAACAGCTTTCCAATG
AAGCGAAGGGATGAATCGTTGGTCCTTCGGAATACGGGAGGTCACGAAAG
TCAAGAGTTCTACTATTATACCATCCCGTGAAGCTAAACACTCGCGCTCG
ATTTTTTTCGCTTCTCTAAGAAACCCAGCGCTAAGCTGAGAGCTCTCTGA
AGATGAAGGCGGTGTGCGAGCGAAGTCCGAAGTATCCTTGGCATGTGGTG
TCGAGATGTCGACACAGGGAAATGTCGTCGTCCCCGCAAACCACCTTCCT
CCCGATTACCGATTACCACAGCACTCTTTTACGAGAAAGGTGCAAAGGGC
AATATTCTGCTAACAGAGAATGCCGCCACTGATAGCATCTCTCTGCATGG
TGCAATATACATTACATTACATTACATAGAGAGAGAGAGTCACTAATAAT
AGTTTTAGCAATAGTTTATGGTAATATGACTTTCAATTGTTTTGGATTCT
TCTCTTCGCCCTTTGGGACCGCCATCGGCTAATTCAACTCACTCAATTCA
CTCAACAGTGTTTCTTAATGCGCTTCCCGCTCAACTGTGCAAACTTATAT
CCTCTTTCGACCTGTGTCGCGCCCGCGTCGATCAATCCATCCCTTCTCTC
TCAGGAGCATACATGCAGTGGCGAGCTAAGGCCATTGGGGAAAAGGGTGC
CGCCGCAGAAGCCATGCTGGAAAAGTGTGGGCCGTACGGGAAAATGACCG
TCAGACGGGCGATGGTGGTGGTTCTGCAAGTGCTCAAGAAAGTATTGGGC
GATGAGTTTTGCGAGGATAGGTTGGAAATGGTCTGCGTGGATTTGAGTGA
AGGTGACACGGATCTCGGGGAGATCGCTTCCCTGTCCGTAGAGAGCAGGC
AGCACAACTCTCAGGTTGTTGTTGATGAAGGACGAAGCACGGCAGCGTTA
GATTATATTAATAGGTTCGATGCGATTGATGCGATTGGTACTTGGGATAG
AAGTAAGGGTTTAGAAGAAGTCGACAAGCATGGTGGGGGAAGGATAACAC
TTCCAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1346:250550..255005-

>mRNA_F-serratus_M_contig1346.2575.1 ID=mRNA_F-serratus_M_contig1346.2575.1|Name=mRNA_F-serratus_M_contig1346.2575.1|organism=Fucus serratus male|type=CDS|length=1932bp|location=Sequence derived from alignment at F-serratus_M_contig1346:250550..255005- (Fucus serratus male)
ACAAAACGTTATGTTCACGTCGAGGCGGTGACACACGTACAAAACGTTAT
GTTCACGTCGAGGCGGTGACACACGTGCGAAGAAAAGCACCAGTGCGAGA
GAAGAAGGCGTATGACACGAACGTGAGGGGGTTTTCTCCCGACGGGAGCA
TCTATCAGGCGAAGAAAAGCACCAGTGCGAGAGAAGAAGGCGTATGACAC
GAACGTGAGGGGGTTTTCTCCCGACGGGAGCATCTATCAGATCGAATACG
CCATCCAGGCCGCAGATAAGGGAGGCCTGACGATCGGCGTGCAGACGGAC
CAGGGACTCGTGCTCGCGGCGCAGGGTCGACGACGCTCACCGCTGCTGAA
GAGCTCGTCGGTGTTCAAGATCAACGACATAGACGCCTGCATCTCCTGTG
CCATGTCTGGGCTCCTCCCGGACGGTCGTATGTTGGTCGACTACGCGCGA
TCGAATACGCCATCCAGGCCGCAGATAAGGGAGGCCTGACGATCGGCGTG
CAGACGGACCAGGGACTCGTGCTCGCGGCGCAGGGTCGACGACGCTCACC
GCTGCTGAAGAGCTCGTCGGTGTTCAAGATCAACGACATAGACGCCTGCA
TCTCCTGTGCCATGTCTGGGCTCCTCCCGGACGGTCGTATGTTGGTCGAC
TACGCGCGCACGTGGGTACAAGAGCACCGTTTTGAGTTCGACGAGGCTCC
AAGCGTGGAAGCGGTGGCATCGCACCTGAGCCAGCTCGCCCTCAAGTTTC
ACGGCTACGACAAAGACGGGAAGCCGCGTAGCAGCAAGGAAGAGGCAGAT
GGTGGCGCGATGGCGAGGCCAGTAGGCGTAGCGTTGCTGATGGCGGGAGT
CGACCGTGGAAACCGTCCGGTACTTTATCACCTCGATCCGTCAGCACGTG
GGTACAAGAGCACCGTTTTGAGTTCGACGAGGCTCCAAGCGTGGAAGCGG
TGGCATCGCACCTGAGCCAGCTCGCCCTCAAGTTTCACGGCTACGACAAA
GACGGGAAGCCGCGTAGCAGCAAGGAAGAGGCAGATGGTGGCGCGATGGC
GAGGCCAGTAGGCGTAGCGTTGCTGATGGCGGGAGTCGACCGTGGAAACC
GTCCGGTACTTTATCACCTCGATCCGTCAGGAGCATACATGCAGTGGCGA
GCTAAGGCCATTGGGGAAAAGGGTGCCGCCGCAGAAGCCATGCTGGAAAA
GTGTGGGCCGTACGGGAAAATGACCGTCAGACGGGCGATGGTGGTGGTTC
TGCAAGTGCTCAAGAAAGTATTGGGCGATGAGTTTTGCGAGGATAGGTTG
GAAATGGTCTGCGTGGATTTGAGTGAAGGTGACACGGATCTCGGGGAGAT
CGCTTCCCTGTCCGTAGAGAGCAGGCAGCACAACTCTCAGGTTGTTGTTG
ATGAAGGACGAAGCACGGCAGCGTTAGATTATATTAATAGGTTCGATGCG
ATTGATGCGATTGGTACTTGGGATAGAAGTAAGGGTTTAGAAGAAGTCGA
CAAGCATGGTGGGGGAAGGATAACACTTCCAGAGCATACATGCAGTGGCG
AGCTAAGGCCATTGGGGAAAAGGGTGCCGCCGCAGAAGCCATGCTGGAAA
AGTGTGGGCCGTACGGGAAAATGACCGTCAGACGGGCGATGGTGGTGGTT
CTGCAAGTGCTCAAGAAAGTATTGGGCGATGAGTTTTGCGAGGATAGGTT
GGAAATGGTCTGCGTGGATTTGAGTGAAGGTGACACGGATCTCGGGGAGA
TCGCTTCCCTGTCCGTAGAGAGCAGGCAGCACAACTCTCAGGTTGTTGTT
GATGAAGGACGAAGCACGGCAGCGTTAGATTATATTAATAGGTTCGATGC
GATTGATGCGATTGGTACTTGGGATAGAAGTAAGGGTTTAGAAGAAGTCG
ACAAGCATGGTGGGGGAAGGATAACACTTCCA
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