mRNA_F-serratus_M_contig1346.2573.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1346.2573.1
Unique NamemRNA_F-serratus_M_contig1346.2573.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1346.2573.1 vs. uniprot
Match: D8LBM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM8_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 6.730e-52
Identity = 119/250 (47.60%), Postives = 140/250 (56.00%), Query Frame = 1 
Query:  958 DFGVSMVGPVQRKAKHSRRSKAYGEPRLGRRENVSSVARFPRGATRA--LSAGHR--------------RESCRDGGFSRPCDLGLSAEKLLGDAQDVARIRSDGGLRASFQGVCWIASNCCVGDNKGLLSGRRYLVLCDKIIWAELCEAGGRDSVTSRASGEDDGGK-------QAGFQPVISMIGATVQHCEVATSNNGWVIEVVNRDTNTTLWLDPANPTGLLRWGSVLCQALKEDLGEEEDGRVDE 1638
            DFG S+   + R     RR         GRR +V+     P G TRA  L+A                 RESCRDG        GLSA +LL DAQDVARIRS  GLR+  +G CWIASN CVG  KG  S + +L LCD   WAEL +A  R S+ + +     GG+        AGF P+I++ GA +QHCEVA SNNGW+IEVVN   N TLWLDP N T LLRWGSVLCQAL+    E  DG  DE
Sbjct:  173 DFGHSLAAKLSRPVSGRRR---------GRRASVAPGGSSP-GRTRADRLAAAEXXXXXXXXXXXEKSTRESCRDGRVISRTPKGLSAARLLEDAQDVARIRSQAGLRSKMEGFCWIASNWCVGALKGFFSAKSFLFLCDNFFWAELRKADRRCSIAAGSFLSGGGGQGGTTRKQAAGFMPLIALEGAAIQHCEVANSNNGWIIEVVNPSENVTLWLDPENATALLRWGSVLCQALQT---ERYDGEEDE 409
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1346.2573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBM8_ECTSI6.730e-5247.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1346contigF-serratus_M_contig1346:238577..242989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_003380.1
Exons3
Model size1658
Cds size1272
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1346.2573.1prot_F-serratus_M_contig1346.2573.1Fucus serratus malepolypeptideF-serratus_M_contig1346 238952..242978 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.4931173-UTR-F-serratus_M_contig1346:238576..2389511622929324.4931173-UTR-F-serratus_M_contig1346:238576..238951Fucus serratus maleUTRF-serratus_M_contig1346 238577..238951 +
1690962799.3711507-UTR-F-serratus_M_contig1346:238576..2389511690962799.3711507-UTR-F-serratus_M_contig1346:238576..238951Fucus serratus maleUTRF-serratus_M_contig1346 238577..238951 +
1622929324.5654123-UTR-F-serratus_M_contig1346:242978..2429891622929324.5654123-UTR-F-serratus_M_contig1346:242978..242989Fucus serratus maleUTRF-serratus_M_contig1346 242979..242989 +
1690962799.4094028-UTR-F-serratus_M_contig1346:242978..2429891690962799.4094028-UTR-F-serratus_M_contig1346:242978..242989Fucus serratus maleUTRF-serratus_M_contig1346 242979..242989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.5180633-CDS-F-serratus_M_contig1346:238951..2396911622929324.5180633-CDS-F-serratus_M_contig1346:238951..239691Fucus serratus maleCDSF-serratus_M_contig1346 238952..239691 +
1690962799.382406-CDS-F-serratus_M_contig1346:238951..2396911690962799.382406-CDS-F-serratus_M_contig1346:238951..239691Fucus serratus maleCDSF-serratus_M_contig1346 238952..239691 +
1622929324.5324733-CDS-F-serratus_M_contig1346:241485..2417871622929324.5324733-CDS-F-serratus_M_contig1346:241485..241787Fucus serratus maleCDSF-serratus_M_contig1346 241486..241787 +
1690962799.39084-CDS-F-serratus_M_contig1346:241485..2417871690962799.39084-CDS-F-serratus_M_contig1346:241485..241787Fucus serratus maleCDSF-serratus_M_contig1346 241486..241787 +
1622929324.546476-CDS-F-serratus_M_contig1346:242748..2429781622929324.546476-CDS-F-serratus_M_contig1346:242748..242978Fucus serratus maleCDSF-serratus_M_contig1346 242749..242978 +
1690962799.3997061-CDS-F-serratus_M_contig1346:242748..2429781690962799.3997061-CDS-F-serratus_M_contig1346:242748..242978Fucus serratus maleCDSF-serratus_M_contig1346 242749..242978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1346.2573.1

>prot_F-serratus_M_contig1346.2573.1 ID=prot_F-serratus_M_contig1346.2573.1|Name=mRNA_F-serratus_M_contig1346.2573.1|organism=Fucus serratus male|type=polypeptide|length=424bp
MDAAKLLDYFNFFDETPTKTGRHEHGATNKDEDRNGWKSASASTSPMSSS
ACSPAPELHTPPPRTTPQAGPEARPAEVCPLEGVKKRLSVRKRRSSVFFR
LSEMGKVRNSAALVADREKRNQITSKLDDISSSSHCSTGGAAVTPNSAAP
SSSTRPSKKDPEMDLPVEDATAALIATADAAVAVTARQADPPRQDFGVSM
VGPVQRKAKHSRRSKAYGEPRLGRRENVSSVARFPRGATRALSAGHRRES
CRDGGFSRPCDLGLSAEKLLGDAQDVARIRSDGGLRASFQGVCWIASNCC
VGDNKGLLSGRRYLVLCDKIIWAELCEAGGRDSVTSRASGEDDGGKQAGF
QPVISMIGATVQHCEVATSNNGWVIEVVNRDTNTTLWLDPANPTGLLRWG
SVLCQALKEDLGEEEDGRVDEDS*
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mRNA from alignment at F-serratus_M_contig1346:238577..242989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1346.2573.1 ID=mRNA_F-serratus_M_contig1346.2573.1|Name=mRNA_F-serratus_M_contig1346.2573.1|organism=Fucus serratus male|type=mRNA|length=4413bp|location=Sequence derived from alignment at F-serratus_M_contig1346:238577..242989+ (Fucus serratus male)
AGCACTTCGAGTAAATATAATTTAATTTTTTTAATTTTCACCAGTTTAAC
AGGGTCTCGAATCATTTTAAATTGCGAGCGAGGACCTACAAGTACAGTGT
TCACCAGCCCAAACGAAGCAACAACATCAAGCATCCGATCGAGGAAGGAA
CGCAAACTCGCTGGGGAGTATAACTACAAGACGAGGTGGTGAGAAGCACA
GTGAGCCCTCCGGATTTTGTGTCTTTAACAACGACTCACCACTCCAGAAG
TGGTTGTGTCGAGTTTCACCCAGGCATCAGTTGTAGATCTACTTTTATAG
GTTGCTTGCTTCAAAGGTCCTCCCTGGAGATCTTTGTCCAACTTGCGGGT
TGCAGATACCTTGCCCAACGCCAGCATGGATGCCGCGAAGCTGCTCGACT
ACTTCAATTTCTTTGATGAGACTCCAACTAAAACCGGGCGCCACGAGCAC
GGAGCCACGAACAAAGACGAAGACAGAAATGGTTGGAAATCTGCCTCTGC
ATCAACTTCTCCCATGAGCAGCAGTGCATGCTCTCCAGCCCCGGAGCTGC
ACACCCCACCGCCGAGGACGACGCCGCAGGCGGGCCCCGAGGCTCGCCCG
GCAGAGGTATGCCCACTTGAGGGCGTAAAGAAGCGCCTGAGCGTGCGTAA
GCGGCGGTCCTCGGTGTTCTTCCGACTCAGCGAGATGGGGAAGGTGCGGA
ACTCTGCAGCGCTTGTGGCCGACCGAGAGAAGAGAAATCAGATCACCAGC
AAATTGGACGACATATCATCTTCCAGTCATTGCTCGACCGGCGGAGCGGC
GGTTACGCCGAACAGCGCAGCCCCGAGCAGCAGCACACGACCATCGAAGA
AGGATCCTGAGATGGATCTCCCCGTCGAGGATGCGACGGCTGCGTTGATC
GCGACGGCGGATGCAGCTGTGGCCGTAACTGCTCGGCAGGCGGATCCACC
GCGCCAGGATTTTGGTGTCAGCATGGTCGGACCCGTGCAGCGCAAGGCAA
AGCATAGTAGACGAAGCAAAGCTTACGGCGAACCGCGACTCGGCAGGAGG
GAGAATGTTTCATCTGTAGCTCGTTTTCCGAGGGGTGCAACTCGGGCTCT
AAGCGCTGGACACAGGTATCGAAAAGCTTTGACCGTTTTTTGTCCCACGA
ATATTGCAAAAAGTTGATTACGCAACCTATTAACAGTATACCCCTTCGAG
CCCCTATTTTGTCACTGGGCGTCGTGGACGAACCTAAACAAAGGCCGAAC
GATTTGAAATTATGCCTTGCGACTGACGAGAGTTTTACATTAGGTCATTA
TAGCGAGGAAGTCCTCTGGAGTTGCCACCGATGCATACAACAATTTCAAG
AACACGAGGATGTCGCAAACCGGTACACGTAGTTACGTGGCTACATGAGA
ACACGATGTGTACGTACAGCAGCCACCTACTATAGCTCATGGCTCCTGGC
ATGGAGCTCGGCTGTATGGTAATAAAGATGAAACACGTTGTTGTTGTTGT
TGTTGTTGTTTTCTTCACATTAACTGGTTATTCTTGTCAGGCATTCCAAT
GGTACATTGTAGTATACTGCTGTTGTACTACTGTGTTACATGTATGTCTC
TTTGCTTTGTTGAAGCCGCCGCCGCCCTTCGTTCAATCGTCGATACAGTA
GTAGCCACACGTGTTTCTTTCTCTTTATTTTTTGCTACCAGTATTGTTAT
TTGTTGGATTTGTTTATTTGCAGATGTCGCTTTTTCCGAGTATCCATTTC
CGCTTCTCGTTGTTATGGAGAGTACATCGTACGTTCTTTCCTTCCGTATG
GTATTTTTCTACCTTGTGACCACGGGCTGGATTTTTGCCATCATCTTATG
TGAGAATTCAATCAATCAATCAATCGAAATGTATTGTGCCCCTGTTAGAA
CATATTTCGCCAACACCTGACGTACCAACCATTTGTGTATAAAAGCATGT
TCCTTTATTCATTCGCGCACGAGCCGCCACAGACGATTAGATTATATTTC
AGAGATCTCATTTGAATTGTAGAAACAAGTACTCTGTATGTACTGGTACC
AGGTATCAAAACTTGCCTCCGAACGATCGTGATCGTTGACACGGTGTCGG
TCGGTCGATACGTTGGCCACCGGTATACGTTCTGAAACAAAGAGTTCATA
TACTCTATTTATCTATCAGAGTTTGTACATCACACATTATATTCGTCGCG
TGTCGAGTGGGAGCGATGAGCTCTATCTATCCCCTTTGTCCGACATGTCG
CCTGCGACGGCTGATTGTCTGGAGCCCTTTTTTTTCTTTTTCTTTTCGGG
gaGGGGGGGGTTGGAGGGTTCCTATTATCGCGTGTGTGTTGACTTCTCTG
GGTCCTTTTATTTATCTTTCATTTCTCATAATATGTACCCTTTTGGGGGG
TAGTTAGCCTGTGACCACGGAAAGCGTTCGCGTCAGTTGGACCAGTACGG
ATGTTGGAAGGTACTGAGCAGAGATCGGAACGGTATTTAATGTGAAGGCA
ACAACAACAACAACCCCTTGTTCACCTCGCGCGCCGGAGTAGGGTAAGGT
AAGGTAAGTGTGACACTGGGCGTACGAGAAGCACCTCGCCGGCGAACTCT
GCAATGTTTCCGTCATCGTGTACCTTGGTATGTACTACTGTAACAATCAG
AACGTCTAGGTACGTTCTGTATTTTTCTTAAACCCTGGTATCGTTTAGAG
CAACAAGGATTGGTTGCCGTTATTAACCAATCAGAGATGCAAACACGCGT
CCGCGTCGTGAGCAAATGTTCTGTAGTACTACTGTATCGAGGACCCTTTG
TGGCTCTCGAGACTTTGCCCTGCCACGTCGACCTTGAACATGAGAAACGA
GATTATCGACCCCGATTGATTCCCTTTTTGCCTCACTTGCATCATACCAC
GCGTGACAGGCGCGAATCCTGCCGCGACGGTGGATTCAGTCGGCCTTGTG
ATCTCGGACTGAGCGCCGAGAAACTGCTCGGAGATGCTCAAGACGTTGCT
CGTATCCGCTCCGACGGAGGCTTGCGCGCCTCCTTTCAGGGCGTATGCTG
GATAGCAAGTAATTGTTGCGTCGGGGACAATAAAGGCTTGTTGAGCGGAA
GACGGTACCTGGTGCTCTGCGACAAGATCATCTGGGCGGAACTGTGCGAG
GCGGGCGGGCGTGACAGCGTCACGAGCAGGGCCAGCGGAGAAGATGATGG
AGGGAAGCAAGGTTAGAGGAGACACGCGGATTGATCCATGTCGCAAGACT
CGCTTGTTTCCGGCGGTCTCTCGTTACACCCGTTACACCTGTTTGAAGTC
CGGCAATCAAATCAATCTACTACCGTTCACGGGAATGTTTAGAAAAAATC
AGAACAGCACCTACTCTTTAGACCTTTTGAGTTGTTGTTTCTCCCATTCA
ATATATTGGTTGCCAACCCCAAAAAACTGCTCGACACGGAGTGTGTGCTT
GTCCTTATAATCAAACTAACAATAATGCTCGACACTCGCGTGTGTACGTG
TGTGCTTTTCCTATTTAATAATTAAACTATTAATAATGCTCGACACTCGC
TTGAATGTTTTCCGGTGAAGCTACATGACGTTGTCAATTCCAATCCACTC
GTGCCCATCAAGCAAGAAGCGAACGCGTTCATTGCTTCACAATAACATTC
CCCTATCGGTACAAACGCACCTACTCGTGTTATTACAATAGTGTATGTAC
GTATGTATGTATGTGGAGGCATAGTCTAACGGGAACGGACGGCCTCGGCA
ATAACATGAACCTACTCGTGTTATTAGTGTAAGTAAGTATGTATCTGGAG
GCATAGTCTAACGAGAACGGTACAAACGCACCTACTCGTGTTATAATAAT
AGTGTATGTACGTATGTATGTATGTGGAGGCATAGTCTAACGGGAACGGA
CGGCCTCGGCAATAACATAAACCTACTCGTGTTATTAGTGTAAGTATGTA
TCTGGAGGCATAGTCTAACGAGAACGGACGGCCTGTCTTGGGGAGTCCAC
GATGGGACGGACACGGCAATAATATTTATGAAAGTCCGTTGAATGTGACC
CCCCAGCCTATTAATACTGTTATAATACCAGTACTATTTAATATTACAAT
ACTAACACCAAAACGGATCATCCCTCGCCCCCACGCGGTTATCTGCTCTA
CTCTACTCTCTCCCGTCTGCAGCTGGATTCCAACCGGTGATATCGATGAT
CGGAGCGACCGTCCAGCACTGCGAGGTGGCGACTTCCAACAACGGCTGGG
TCATTGAAGTCGTCAACCGGGACACCAATACAACCCTTTGGCTCGATCCA
GCAAACCCCACCGGTTTGCTGAGGTGGGGGTCGGTTTTGTGCCAGGCTCT
GAAGGAAGACTTGGGAGAAGAGGAAGACGGGCGAGTGGACGAGGACAGCT
GAGAGATAATCCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1346:238577..242989+

>mRNA_F-serratus_M_contig1346.2573.1 ID=mRNA_F-serratus_M_contig1346.2573.1|Name=mRNA_F-serratus_M_contig1346.2573.1|organism=Fucus serratus male|type=CDS|length=2544bp|location=Sequence derived from alignment at F-serratus_M_contig1346:238577..242989+ (Fucus serratus male)
ATGGATGCCGCGAAGCTGCTCGACTACTTCAATTTCTTTGATGAGACTCC
AACTAAAACCGGGCGCCACGAGCACGGAGCCACGAACAAAGACGAAGACA
GAAATGGTTGGAAATCTGCCTCTGCATCAACTTCTCCCATGAGCAGCAGT
GCATGCTCTCCAGCCCCGGAGCTGCACACCCCACCGCCGAGGACGACGCC
GCAGGCGGGCCCCGAGGCTCGCCCGGCAGAGGTATGCCCACTTGAGGGCG
TAAAGAAGCGCCTGAGCGTGCGTAAGCGGCGGTCCTCGGTGTTCTTCCGA
CTCAGCGAGATGGGGAAGGTGCGGAACTCTGCAGCGCTTGTGGCCGACCG
AGAGAAGAGAAATCAGATCACCAGCAAATTGGACGACATATCATCTTCCA
GTCATTGCTCGACCGGCGGAGCGGCGGTTACGCCGAACAGCGCAGCCCCG
AGCAGCAGCACACGACCATCGAAGAAGGATCCTGAGATGGATCTCCCCGT
CGAGGATGCGACGGCTGCGTTGATCGCGACGGCGGATGCAGCTGTGGCCG
TAACTGCTCGGCAGGCGGATCCACCGCGCCAGGATTTTGGTGTCAGCATG
GTCGGACCCGTGCAGCGCAAGGCAAAGCATAGTAGACGAAGCAAAGCTTA
CGGCGAACCGCGACTCGGCAGGAGGGAGAATGTTTCATCTGTAGCTCGTT
TTCCGAGGGGTGCAACTCGGGCTCTAAGCGCTGGACACAGATGGATGCCG
CGAAGCTGCTCGACTACTTCAATTTCTTTGATGAGACTCCAACTAAAACC
GGGCGCCACGAGCACGGAGCCACGAACAAAGACGAAGACAGAAATGGTTG
GAAATCTGCCTCTGCATCAACTTCTCCCATGAGCAGCAGTGCATGCTCTC
CAGCCCCGGAGCTGCACACCCCACCGCCGAGGACGACGCCGCAGGCGGGC
CCCGAGGCTCGCCCGGCAGAGGTATGCCCACTTGAGGGCGTAAAGAAGCG
CCTGAGCGTGCGTAAGCGGCGGTCCTCGGTGTTCTTCCGACTCAGCGAGA
TGGGGAAGGTGCGGAACTCTGCAGCGCTTGTGGCCGACCGAGAGAAGAGA
AATCAGATCACCAGCAAATTGGACGACATATCATCTTCCAGTCATTGCTC
GACCGGCGGAGCGGCGGTTACGCCGAACAGCGCAGCCCCGAGCAGCAGCA
CACGACCATCGAAGAAGGATCCTGAGATGGATCTCCCCGTCGAGGATGCG
ACGGCTGCGTTGATCGCGACGGCGGATGCAGCTGTGGCCGTAACTGCTCG
GCAGGCGGATCCACCGCGCCAGGATTTTGGTGTCAGCATGGTCGGACCCG
TGCAGCGCAAGGCAAAGCATAGTAGACGAAGCAAAGCTTACGGCGAACCG
CGACTCGGCAGGAGGGAGAATGTTTCATCTGTAGCTCGTTTTCCGAGGGG
TGCAACTCGGGCTCTAAGCGCTGGACACAGGCGCGAATCCTGCCGCGACG
GTGGATTCAGTCGGCCTTGTGATCTCGGACTGAGCGCCGAGAAACTGCTC
GGAGATGCTCAAGACGTTGCTCGTATCCGCTCCGACGGAGGCTTGCGCGC
CTCCTTTCAGGGCGTATGCTGGATAGCAAGTAATTGTTGCGTCGGGGACA
ATAAAGGCTTGTTGAGCGGAAGACGGTACCTGGTGCTCTGCGACAAGATC
ATCTGGGCGGAACTGTGCGAGGCGGGCGGGCGTGACAGCGTCACGAGCAG
GGCCAGCGGAGAAGATGATGGAGGGAAGCAAGGCGCGAATCCTGCCGCGA
CGGTGGATTCAGTCGGCCTTGTGATCTCGGACTGAGCGCCGAGAAACTGC
TCGGAGATGCTCAAGACGTTGCTCGTATCCGCTCCGACGGAGGCTTGCGC
GCCTCCTTTCAGGGCGTATGCTGGATAGCAAGTAATTGTTGCGTCGGGGA
CAATAAAGGCTTGTTGAGCGGAAGACGGTACCTGGTGCTCTGCGACAAGA
TCATCTGGGCGGAACTGTGCGAGGCGGGCGGGCGTGACAGCGTCACGAGC
AGGGCCAGCGGAGAAGATGATGGAGGGAAGCAAGCTGGATTCCAACCGGT
GATATCGATGATCGGAGCGACCGTCCAGCACTGCGAGGTGGCGACTTCCA
ACAACGGCTGGGTCATTGAAGTCGTCAACCGGGACACCAATACAACCCTT
TGGCTCGATCCAGCAAACCCCACCGGTTTGCTGAGGTGGGGGTCGGTTTT
GTGCCAGGCTCTGAAGGAAGACTTGGGAGAAGAGGAAGACGGGCGAGTGG
ACGAGGACAGCTGACTGGATTCCAACCGGTGATATCGATGATCGGAGCGA
CCGTCCAGCACTGCGAGGTGGCGACTTCCAACAACGGCTGGGTCATTGAA
GTCGTCAACCGGGACACCAATACAACCCTTTGGCTCGATCCAGCAAACCC
CACCGGTTTGCTGAGGTGGGGGTCGGTTTTGTGCCAGGCTCTGAAGGAAG
ACTTGGGAGAAGAGGAAGACGGGCGAGTGGACGAGGACAGCTGA
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