mRNA_F-serratus_M_contig1346.2571.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1346.2571.1
Unique NamemRNA_F-serratus_M_contig1346.2571.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1346.2571.1 vs. uniprot
Match: D8LBM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM9_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 2.770e-78
Identity = 226/669 (33.78%), Postives = 300/669 (44.84%), Query Frame = 1 
Query:    1 RLLVVNSTRLLSLRAGLGPAGDGYGLEQMPAISIPKDAELVSCRIVPTRRSRAQSTTPLPLRTTAGVVCLAMISTLDAPPADHASKQSDAAGGPAARSSGPSGGIPATSSPTSRASQPPAGGLLYVYPMRGEKKFEVERALQRQPQQLALPFIPAGMTHATVWRDLIASND-------------------AEMASSSSRYSHGRIEKGDALLVWDRGGEVYGYTRWEGFTPDGDGHCRDGK----------------SCGGVT-LTAESQESMSQLFPELASVGSPVLNLCTLAMDEGG--ATRWRQVMAGCVDGVYHASF-DAFNPR--AAFSFLNGPVSAVSFKSWPL-----RNVRDQFDNDDAPAEHEVVGFACGEMGMMASLVTSRTEKTQNIS--WVTANEACVDCA----DEVTCMGCADFCRDGSHAVAIGTRNGKVIIYASAPPIVRENSEANTS-------RIDAG---------FGATFWDEDDSASSESPYELAEDGPP--------------AAHFSERNHHA---CDQSVLNAPTIPGLSLR----AEWQRDMPHSVWGITLGDFNHDGIDEMVVVTQFGLHVFRPDYRDEATRLAKTLDVLQMLQPNRAVPAD----------EGSEDGVET-AVSLLGVEVHEVGHSITSNAR 1707
            RLLVVN T LL LRAGLGPAG+ +GL Q+P  S+P+ A++V+C +V TRR    S                                                                   LL VYP+ GE+  EV+RAL+R+PQQL LP++P GM H TVWR + A  +                                R+E+GDA+LVWD+ G V+GYTRWEG    GD                       + G V+ LTAES+ES+  L PEL  + SPV  L   A++EG   A R R+V+AGC++     S  DA + R   A + + GPV AV+  + P      R+V D++  +       V GFAC E+ M+A LV         +   W T +   V+      D+VTCM CADF RDGS AVAIGT  GKVI+Y++ P       E   +       R+DAG         FG     +D S   E+        PP              A+  ++R  H+    D+             R    A WQRD+PH V  I  GDFNHDG+ E+VV TQ+G+HVFRPDYR EA+R AKT+  L+MLQP      D          +G  +G         G+E H VG + +  A 
Sbjct:   26 RLLVVNETGLLKLRAGLGPAGNRFGLGQLPVESLPEVAKVVACTVVRTRRGDG-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLNVYPLDGERGSEVDRALRREPQQLVLPYMPVGMAHTTVWRSVAALPNFVGGGXXXXXXXXXXXXXXXXXXXXXXXXXRVRVERGDAVLVWDQSGMVHGYTRWEG---GGDRRTXXXXXXXXXXXXXXTXXXXXATGHVSILTAESRESLETLMPELRGIDSPVSCLAFDAVEEGDGWARRRRRVLAGCMESARCVSLHDAASGRRETAVASVPGPVGAVALNARPRFMPYDRHVDDRWGGN-------VAGFACTELDMLAWLVEGGNAAGAGVGGRWYTGSLPLVEAGGGGGDQVTCMECADFFRDGSTAVAIGTNLGKVIVYSAEPN--NGGGEGGLAGGLEEVGRVDAGGRSGGEGLVFGLEVDGDDSSEEDEAGCSSNPVQPPSRRGDSVSPRPSGLASSSADRQFHSRRVADRQGXXXXXXXXXXXRPLLTARWQRDLPHGVLRIAFGDFNHDGVRELVVATQYGVHVFRPDYRAEASRFAKTMHALKMLQPKEDDGGDFMSSASDNDHDGRHEGSRPRGADASGMETHGVGAAASDGAE 681
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BLAST of mRNA_F-serratus_M_contig1346.2571.1 vs. uniprot
Match: UPI001C1CE0F7 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1CE0F7)

HSP 1 Score: 54.3 bits (129), Expect = 9.540e-5
Identity = 22/57 (38.60%), Postives = 34/57 (59.65%), Query Frame = 1 
Query: 1420 WQRDMPHSVWGITLGDFNHDGIDEMVVVTQFGLHVFRPDYRDEATRLAKTLDVLQML 1590
            WQR   H ++ I   D N DGI+E++V TQ+G+H+ +P+      +L K LD +  L
Sbjct:  128 WQRSFTHPIYRIASLDLNEDGIEELIVATQYGVHILQPNLSKAKEQLLKVLDEIDNL 184
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1346.2571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBM9_ECTSI2.770e-7833.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI001C1CE0F79.540e-538.60Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1346contigF-serratus_M_contig1346:230278..231993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003370.1
Exons1
Model size1716
Cds size1632
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.2898479-UTR-F-serratus_M_contig1346:230277..2303611622929324.2898479-UTR-F-serratus_M_contig1346:230277..230361Fucus serratus maleUTRF-serratus_M_contig1346 230278..230361 +
1690962799.3052359-UTR-F-serratus_M_contig1346:230277..2303611690962799.3052359-UTR-F-serratus_M_contig1346:230277..230361Fucus serratus maleUTRF-serratus_M_contig1346 230278..230361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.3488042-CDS-F-serratus_M_contig1346:230361..2319931622929324.3488042-CDS-F-serratus_M_contig1346:230361..231993Fucus serratus maleCDSF-serratus_M_contig1346 230362..231993 +
1690962799.3163009-CDS-F-serratus_M_contig1346:230361..2319931690962799.3163009-CDS-F-serratus_M_contig1346:230361..231993Fucus serratus maleCDSF-serratus_M_contig1346 230362..231993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1346.2571.1prot_F-serratus_M_contig1346.2571.1Fucus serratus malepolypeptideF-serratus_M_contig1346 230362..231993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1346.2571.1

>prot_F-serratus_M_contig1346.2571.1 ID=prot_F-serratus_M_contig1346.2571.1|Name=mRNA_F-serratus_M_contig1346.2571.1|organism=Fucus serratus male|type=polypeptide|length=544bp
MPAISIPKDAELVSCRIVPTRRSRAQSTTPLPLRTTAGVVCLAMISTLDA
PPADHASKQSDAAGGPAARSSGPSGGIPATSSPTSRASQPPAGGLLYVYP
MRGEKKFEVERALQRQPQQLALPFIPAGMTHATVWRDLIASNDAEMASSS
SRYSHGRIEKGDALLVWDRGGEVYGYTRWEGFTPDGDGHCRDGKSCGGVT
LTAESQESMSQLFPELASVGSPVLNLCTLAMDEGGATRWRQVMAGCVDGV
YHASFDAFNPRAAFSFLNGPVSAVSFKSWPLRNVRDQFDNDDAPAEHEVV
GFACGEMGMMASLVTSRTEKTQNISWVTANEACVDCADEVTCMGCADFCR
DGSHAVAIGTRNGKVIIYASAPPIVRENSEANTSRIDAGFGATFWDEDDS
ASSESPYELAEDGPPAAHFSERNHHACDQSVLNAPTIPGLSLRAEWQRDM
PHSVWGITLGDFNHDGIDEMVVVTQFGLHVFRPDYRDEATRLAKTLDVLQ
MLQPNRAVPADEGSEDGVETAVSLLGVEVHEVGHSITSNARVF*
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mRNA from alignment at F-serratus_M_contig1346:230278..231993+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1346.2571.1 ID=mRNA_F-serratus_M_contig1346.2571.1|Name=mRNA_F-serratus_M_contig1346.2571.1|organism=Fucus serratus male|type=mRNA|length=1716bp|location=Sequence derived from alignment at F-serratus_M_contig1346:230278..231993+ (Fucus serratus male)
AGGTTACTCGTGGTGAACTCCACAAGGCTGCTCTCGCTGCGGGCTGGCCT
GGGCCCGGCGGGCGACGGATACGGTCTTGAGCAAATGCCGGCGATATCGA
TCCCAAAGGATGCAGAGCTCGTGTCTTGCAGGATCGTGCCCACCCGCCGC
AGCAGGGCACAATCGACGACACCGCTCCCGCTCCGAACGACTGCTGGAGT
GGTGTGCCTGGCAATGATCTCCACGCTGGACGCGCCACCTGCGGATCACG
CGTCGAAGCAGAGCGATGCAGCTGGGGGACCTGCGGCGAGGTCATCCGGC
CCAAGCGGAGGTATTCCCGCAACATCGTCACCGACATCCCGGGCCTCCCA
GCCGCCTGCCGGCGGTCTCTTGTACGTGTACCCCATGCGCGGGGAGAAAA
AGTTTGAGGTTGAGAGGGCTCTTCAGCGGCAGCCGCAGCAGCTTGCGTTG
CCGTTCATCCCGGCCGGAATGACCCACGCAACCGTTTGGCGCGATCTCAT
TGCTTCGAACGATGCTGAAATGGCGTCGTCGTCTTCGAGGTACAGCCATG
GGAGGATCGAAAAGGGCGACGCGTTGCTCGTGTGGGATCGAGGCGGGGAA
GTGTACGGATACACGCGGTGGGAGGGATTTACACCGGATGGCGACGGGCA
CTGTCGCGACGGCAAGAGCTGTGGTGGAGTTACGCTTACGGCGGAGTCGC
AGGAGAGCATGTCTCAGTTGTTTCCGGAGCTGGCGAGCGTCGGCAGCCCC
GTGCTCAACCTTTGTACCCTCGCCATGGACGAAGGGGGCGCGACCCGTTG
GAGGCAAGTGATGGCGGGATGTGTGGACGGCGTTTACCACGCCTCTTTCG
ACGCTTTCAACCCTCGGGCGGCGTTCTCCTTTCTCAATGGTCCAGTATCT
GCTGTGAGCTTTAAGTCGTGGCCTCTCAGAAATGTCCGCGACCAGTTTGA
TAATGATGATGCTCCAGCGGAGCACGAAGTCGTCGGCTTTGCTTGCGGTG
AGATGGGCATGATGGCGTCACTCGTGACATCCCGTACGGAAAAAACGCAA
AACATTTCGTGGGTGACAGCCAACGAAGCCTGCGTGGACTGCGCGGATGA
GGTGACTTGCATGGGGTGTGCCGACTTCTGCCGTGATGGCTCCCACGCGG
TTGCAATCGGAACCCGTAATGGCAAGGTGATCATCTATGCATCCGCGCCT
CCGATCGTCCGCGAAAATTCAGAGGCGAACACCTCCCGGATTGACGCAGG
CTTCGGAGCCACCTTCTGGGATGAAGACGACTCGGCGTCGTCGGAGAGTC
CTTACGAGCTGGCCGAAGATGGACCTCCGGCGGCGCACTTTTCAGAACGA
AACCATCATGCGTGCGACCAAAGCGTTCTTAACGCTCCGACGATTCCTGG
GCTCTCCTTGCGGGCAGAGTGGCAACGCGATATGCCGCACTCTGTGTGGG
GAATTACTTTGGGCGATTTTAATCACGACGGGATCGACGAGATGGTCGTA
GTGACGCAGTTCGGATTGCACGTGTTCCGGCCAGACTATCGAGACGAGGC
AACGAGGCTCGCCAAAACGTTGGACGTGCTCCAGATGCTCCAGCCGAACC
GGGCGGTCCCCGCAGACGAGGGCAGCGAGGATGGGGTAGAGACTGCCGTG
AGCTTGCTGGGGGTAGAGGTCCACGAAGTCGGCCATTCCATCACCTCAAA
CGCTCGAGTTTTCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1346:230278..231993+

>mRNA_F-serratus_M_contig1346.2571.1 ID=mRNA_F-serratus_M_contig1346.2571.1|Name=mRNA_F-serratus_M_contig1346.2571.1|organism=Fucus serratus male|type=CDS|length=3264bp|location=Sequence derived from alignment at F-serratus_M_contig1346:230278..231993+ (Fucus serratus male)
ATGCCGGCGATATCGATCCCAAAGGATGCAGAGCTCGTGTCTTGCAGGAT
CGTGCCCACCCGCCGCAGCAGGGCACAATCGACGACACCGCTCCCGCTCC
GAACGACTGCTGGAGTGGTGTGCCTGGCAATGATCTCCACGCTGGACGCG
CCACCTGCGGATCACGCGTCGAAGCAGAGCGATGCAGCTGGGGGACCTGC
GGCGAGGTCATCCGGCCCAAGCGGAGGTATTCCCGCAACATCGTCACCGA
CATCCCGGGCCTCCCAGCCGCCTGCCGGCGGTCTCTTGTACGTGTACCCC
ATGCGCGGGGAGAAAAAGTTTGAGGTTGAGAGGGCTCTTCAGCGGCAGCC
GCAGCAGCTTGCGTTGCCGTTCATCCCGGCCGGAATGACCCACGCAACCG
TTTGGCGCGATCTCATTGCTTCGAACGATGCTGAAATGGCGTCGTCGTCT
TCGAGGTACAGCCATGGGAGGATCGAAAAGGGCGACGCGTTGCTCGTGTG
GGATCGAGGCGGGGAAGTGTACGGATACACGCGGTGGGAGGGATTTACAC
CGGATGGCGACGGGCACTGTCGCGACGGCAAGAGCTGTGGTGGAGTTACG
CTTACGGCGGAGTCGCAGGAGAGCATGTCTCAGTTGTTTCCGGAGCTGGC
GAGCGTCGGCAGCCCCGTGCTCAACCTTTGTACCCTCGCCATGGACGAAG
GGGGCGCGACCCGTTGGAGGCAAGTGATGGCGGGATGTGTGGACGGCGTT
TACCACGCCTCTTTCGACGCTTTCAACCCTCGGGCGGCGTTCTCCTTTCT
CAATGGTCCAGTATCTGCTGTGAGCTTTAAGTCGTGGCCTCTCAGAAATG
TCCGCGACCAGTTTGATAATGATGATGCTCCAGCGGAGCACGAAGTCGTC
GGCTTTGCTTGCGGTGAGATGGGCATGATGGCGTCACTCGTGACATCCCG
TACGGAAAAAACGCAAAACATTTCGTGGGTGACAGCCAACGAAGCCTGCG
TGGACTGCGCGGATGAGGTGACTTGCATGGGGTGTGCCGACTTCTGCCGT
GATGGCTCCCACGCGGTTGCAATCGGAACCCGTAATGGCAAGGTGATCAT
CTATGCATCCGCGCCTCCGATCGTCCGCGAAAATTCAGAGGCGAACACCT
CCCGGATTGACGCAGGCTTCGGAGCCACCTTCTGGGATGAAGACGACTCG
GCGTCGTCGGAGAGTCCTTACGAGCTGGCCGAAGATGGACCTCCGGCGGC
GCACTTTTCAGAACGAAACCATCATGCGTGCGACCAAAGCGTTCTTAACG
CTCCGACGATTCCTGGGCTCTCCTTGCGGGCAGAGTGGCAACGCGATATG
CCGCACTCTGTGTGGGGAATTACTTTGGGCGATTTTAATCACGACGGGAT
CGACGAGATGGTCGTAGTGACGCAGTTCGGATTGCACGTGTTCCGGCCAG
ACTATCGAGACGAGGCAACGAGGCTCGCCAAAACGTTGGACGTGCTCCAG
ATGCTCCAGCCGAACCGGGCGGTCCCCGCAGACGAGGGCAGCGAGGATGG
GGTAGAGACTGCCGTGAGCTTGCTGGGGGTAGAGGTCCACGAAGTCGGCC
ATTCCATCACCTCAAACGCTCGAGTTTTCTGAATGCCGGCGATATCGATC
CCAAAGGATGCAGAGCTCGTGTCTTGCAGGATCGTGCCCACCCGCCGCAG
CAGGGCACAATCGACGACACCGCTCCCGCTCCGAACGACTGCTGGAGTGG
TGTGCCTGGCAATGATCTCCACGCTGGACGCGCCACCTGCGGATCACGCG
TCGAAGCAGAGCGATGCAGCTGGGGGACCTGCGGCGAGGTCATCCGGCCC
AAGCGGAGGTATTCCCGCAACATCGTCACCGACATCCCGGGCCTCCCAGC
CGCCTGCCGGCGGTCTCTTGTACGTGTACCCCATGCGCGGGGAGAAAAAG
TTTGAGGTTGAGAGGGCTCTTCAGCGGCAGCCGCAGCAGCTTGCGTTGCC
GTTCATCCCGGCCGGAATGACCCACGCAACCGTTTGGCGCGATCTCATTG
CTTCGAACGATGCTGAAATGGCGTCGTCGTCTTCGAGGTACAGCCATGGG
AGGATCGAAAAGGGCGACGCGTTGCTCGTGTGGGATCGAGGCGGGGAAGT
GTACGGATACACGCGGTGGGAGGGATTTACACCGGATGGCGACGGGCACT
GTCGCGACGGCAAGAGCTGTGGTGGAGTTACGCTTACGGCGGAGTCGCAG
GAGAGCATGTCTCAGTTGTTTCCGGAGCTGGCGAGCGTCGGCAGCCCCGT
GCTCAACCTTTGTACCCTCGCCATGGACGAAGGGGGCGCGACCCGTTGGA
GGCAAGTGATGGCGGGATGTGTGGACGGCGTTTACCACGCCTCTTTCGAC
GCTTTCAACCCTCGGGCGGCGTTCTCCTTTCTCAATGGTCCAGTATCTGC
TGTGAGCTTTAAGTCGTGGCCTCTCAGAAATGTCCGCGACCAGTTTGATA
ATGATGATGCTCCAGCGGAGCACGAAGTCGTCGGCTTTGCTTGCGGTGAG
ATGGGCATGATGGCGTCACTCGTGACATCCCGTACGGAAAAAACGCAAAA
CATTTCGTGGGTGACAGCCAACGAAGCCTGCGTGGACTGCGCGGATGAGG
TGACTTGCATGGGGTGTGCCGACTTCTGCCGTGATGGCTCCCACGCGGTT
GCAATCGGAACCCGTAATGGCAAGGTGATCATCTATGCATCCGCGCCTCC
GATCGTCCGCGAAAATTCAGAGGCGAACACCTCCCGGATTGACGCAGGCT
TCGGAGCCACCTTCTGGGATGAAGACGACTCGGCGTCGTCGGAGAGTCCT
TACGAGCTGGCCGAAGATGGACCTCCGGCGGCGCACTTTTCAGAACGAAA
CCATCATGCGTGCGACCAAAGCGTTCTTAACGCTCCGACGATTCCTGGGC
TCTCCTTGCGGGCAGAGTGGCAACGCGATATGCCGCACTCTGTGTGGGGA
ATTACTTTGGGCGATTTTAATCACGACGGGATCGACGAGATGGTCGTAGT
GACGCAGTTCGGATTGCACGTGTTCCGGCCAGACTATCGAGACGAGGCAA
CGAGGCTCGCCAAAACGTTGGACGTGCTCCAGATGCTCCAGCCGAACCGG
GCGGTCCCCGCAGACGAGGGCAGCGAGGATGGGGTAGAGACTGCCGTGAG
CTTGCTGGGGGTAGAGGTCCACGAAGTCGGCCATTCCATCACCTCAAACG
CTCGAGTTTTCTGA
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