mRNA_F-serratus_M_contig134.2542.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig134.2542.1
Unique NamemRNA_F-serratus_M_contig134.2542.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig134contigF-serratus_M_contig134:734231..735202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size477
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig134.2542.1prot_F-serratus_M_contig134.2542.1Fucus serratus malepolypeptideF-serratus_M_contig134 734268..735038 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929314.3688037-UTR-F-serratus_M_contig134:734230..7342671622929314.3688037-UTR-F-serratus_M_contig134:734230..734267Fucus serratus maleUTRF-serratus_M_contig134 734231..734267 -
1690962794.8760626-UTR-F-serratus_M_contig134:734230..7342671690962794.8760626-UTR-F-serratus_M_contig134:734230..734267Fucus serratus maleUTRF-serratus_M_contig134 734231..734267 -
1622929314.4630206-UTR-F-serratus_M_contig134:735038..7352021622929314.4630206-UTR-F-serratus_M_contig134:735038..735202Fucus serratus maleUTRF-serratus_M_contig134 735039..735202 -
1690962794.8993802-UTR-F-serratus_M_contig134:735038..7352021690962794.8993802-UTR-F-serratus_M_contig134:735038..735202Fucus serratus maleUTRF-serratus_M_contig134 735039..735202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929314.409295-CDS-F-serratus_M_contig134:734267..7344031622929314.409295-CDS-F-serratus_M_contig134:734267..734403Fucus serratus maleCDSF-serratus_M_contig134 734268..734403 -
1690962794.8844569-CDS-F-serratus_M_contig134:734267..7344031690962794.8844569-CDS-F-serratus_M_contig134:734267..734403Fucus serratus maleCDSF-serratus_M_contig134 734268..734403 -
1622929314.4313388-CDS-F-serratus_M_contig134:734898..7350381622929314.4313388-CDS-F-serratus_M_contig134:734898..735038Fucus serratus maleCDSF-serratus_M_contig134 734899..735038 -
1690962794.8919845-CDS-F-serratus_M_contig134:734898..7350381690962794.8919845-CDS-F-serratus_M_contig134:734898..735038Fucus serratus maleCDSF-serratus_M_contig134 734899..735038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig134.2542.1

>prot_F-serratus_M_contig134.2542.1 ID=prot_F-serratus_M_contig134.2542.1|Name=mRNA_F-serratus_M_contig134.2542.1|organism=Fucus serratus male|type=polypeptide|length=92bp
MFVFVGWQSLQVLFCPSPDNFSRPRNIFLDVFLKLVFSSPLLGRVLGSKK
AQGTWNVELRITCHSSFPVLCAVSRKKKTTLERGTVELGFR*
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mRNA from alignment at F-serratus_M_contig134:734231..735202-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig134.2542.1 ID=mRNA_F-serratus_M_contig134.2542.1|Name=mRNA_F-serratus_M_contig134.2542.1|organism=Fucus serratus male|type=mRNA|length=972bp|location=Sequence derived from alignment at F-serratus_M_contig134:734231..735202- (Fucus serratus male)
CGAAGCTTAAAAACAAACATTAAAAAAAAAAAACGAGTTATGGACAGGAA
GCTGGTAACGCCTCGATATTAATAGTGGGTTGAGTTAGCAAGAAGACGAG
GATACTGATACGACGTCGGCGAATCTCCTGAGCTACGCGCAATGCGCAAT
TTTTTCCAGAGCTTATGTTTGTTTTTGTGGGCTGGCAAAGCCTTCAGGTT
CTTTTTTGCCCTTCCCCCGACAATTTCTCAAGGCCTCGAAATATTTTTCT
TGACGTCTTCCTGAAGTTAGTATTTTCGTCACCGTTATTAGGGCGGGTCT
TAGGGCGGGTCTTAGATAAAAAAAAGCGCAGGGAACATGGAACGTGGAAC
TTCGAATTACTTGCCATTCCTCGTTCCCTGTTCTATACGCTGTGTCCAGA
AAGAAAAAAAAAGCTAGAACGAGGAACTGTGGAACTTGGTTTTAGGTGAA
AAGTCTGGTAGAGCCACGATTTGAGAACATCGACACAACGACACAGAAGG
TAATGGCGCATGGAAAATTTTATTTTGACTTCGGACCATTGTTTTGGAAA
TTTCTGAGCCTTTTGCTCTCGACCAGCCCGTTCCATGTGGGCTCTTCACT
AATAAAAAGGTACGTGGAGGTTAAAATTATTTTTGCGGAGGGAACAGCAA
ACGTGGAACTGCGACAGGTGCAGGAAAATTATTTCCGCGGACCATCTTTT
CAGGAAAGTTATTTTTTGACGTTGGCCAATCGTAGAGGGATTCGAAGTTC
CACGTTCCTTGTTCCCTGCACTTTTTTTTTATCTAAGACCCGCCCTTAGA
TCAAAAAAAGCGCAGGGAACATGGAACGTGGAACTTCGAATTACTTGCCA
TTCCTCGTTCCCTGTTCTATGCGCTGTGTCCAGAAAGAAAAAAACCACGC
TAGAACGAGGAACTGTGGAACTTGGTTTTAGGTGAAAAGTCTGGTAGGGC
CACGATTTGAGAACATCGACAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig134:734231..735202-

>mRNA_F-serratus_M_contig134.2542.1 ID=mRNA_F-serratus_M_contig134.2542.1|Name=mRNA_F-serratus_M_contig134.2542.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig134:734231..735202- (Fucus serratus male)
ATGTTTGTTTTTGTGGGCTGGCAAAGCCTTCAGGTTCTTTTTTGCCCTTC
CCCCGACAATTTCTCAAGGCCTCGAAATATTTTTCTTGACGTCTTCCTGA
AGTTAGTATTTTCGTCACCGTTATTAGGGCGGGTCTTAGGATGTTTGTTT
TTGTGGGCTGGCAAAGCCTTCAGGTTCTTTTTTGCCCTTCCCCCGACAAT
TTCTCAAGGCCTCGAAATATTTTTCTTGACGTCTTCCTGAAGTTAGTATT
TTCGTCACCGTTATTAGGGCGGGTCTTAGGATCAAAAAAAGCGCAGGGAA
CATGGAACGTGGAACTTCGAATTACTTGCCATTCCTCGTTCCCTGTTCTA
TGCGCTGTGTCCAGAAAGAAAAAAACCACGCTAGAACGAGGAACTGTGGA
ACTTGGTTTTAGGTGAATCAAAAAAAGCGCAGGGAACATGGAACGTGGAA
CTTCGAATTACTTGCCATTCCTCGTTCCCTGTTCTATGCGCTGTGTCCAG
AAAGAAAAAAACCACGCTAGAACGAGGAACTGTGGAACTTGGTTTTAGGT
GA
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