mRNA_F-serratus_M_contig134.2539.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig134.2539.1
Unique NamemRNA_F-serratus_M_contig134.2539.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig134.2539.1 vs. uniprot
Match: A0A6H5JIR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR3_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.920e-30
Identity = 64/116 (55.17%), Postives = 86/116 (74.14%), Query Frame = 1 
Query:   37 LPVAYDAITRVRMGLALQRGNDGAFGSPHLSNVNALLREYCEDNAAMKAQW*EQVRKEMQAVQLYMWERIGDHDEAEQREAIAIYKTARLLNFRFVKQHELSIEDMNPLSGVRFLS 384
            LPVAY+ I RVR GLAL R  DG+F  PHL NV+AL+REY + +AAM A+  +QVR ++  VQ Y WERIGDH +A+Q E IAI++ ARLL+FR+VKQH+L + D++ L    F++
Sbjct:  545 LPVAYEVILRVRAGLALTRMADGSFDRPHLPNVDALIREYTKGDAAMAAKLEDQVRHDILPVQTYTWERIGDHPDAQQHETIAIFEAARLLDFRYVKQHQLHVADIDLLCRFPFVT 660
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BLAST of mRNA_F-serratus_M_contig134.2539.1 vs. uniprot
Match: A0A6H5KSI8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.950e-23
Identity = 56/94 (59.57%), Postives = 65/94 (69.15%), Query Frame = 3 
Query:  375 FPFGTAEVIGSLVLEKDEYISLLLPWMS-YDLWEFWRDNRLRLPHWYGVAKDIALIQPSSAFMERVFFMLPSYMDKRQEKSFSDRIAAFALLKY 653
            FPF T  ++  LV+EKD Y +      S  DLW FW DNR  LP WY VAKD+ALIQPSSAFMERVF +L + MD+RQE+  SDRI A  LLKY
Sbjct:  413 FPFVTTAMVHELVVEKDLYSTAAAGTDSGCDLWAFWHDNRPELPAWYNVAKDVALIQPSSAFMERVFSLLRACMDERQEQCLSDRITASTLLKY 506
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BLAST of mRNA_F-serratus_M_contig134.2539.1 vs. uniprot
Match: A0A6H5JW81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW81_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.130e-21
Identity = 54/98 (55.10%), Postives = 63/98 (64.29%), Query Frame = 3 
Query:  378 PFGTAEVIGSLVLEKDEY-ISLLLPWMSYDLWEFWRDNRLRLPHWYGVAKDIALIQPSSAFMERVFFMLPSYMDKRQEKSFSDRIAAFALLKYTTEDE 668
            PF T  V+ +LV E D Y ++        DLW FW DNRL+L  WY VAKD+ALIQPSSAFMERVF +L + +D RQE    DRI A ALLKY    E
Sbjct:  305 PFVTPTVVAALVEEMDAYNVAAAETDAGCDLWAFWHDNRLKLSAWYNVAKDVALIQPSSAFMERVFSVLRACVDDRQEHCLLDRIEAAALLKYNMSQE 402
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BLAST of mRNA_F-serratus_M_contig134.2539.1 vs. uniprot
Match: A0A6H5K4E0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 7.460e-21
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 3 
Query:  375 FPFGTAEVIGSLVLEKDEY-ISLLLPWMSYDLWEFWRDNRLRLPHWYGVAKDIALIQPSSAFMERVFFMLPSYMDKRQEKSFSDRIAAFALLKY 653
            FPF + E +  L+ EKD+Y ++  +    YD W+FW+D++ +LP W+ V  DIAL+QPSSAFMERVF  + S +D  Q    SDRI A AL+KY
Sbjct:   28 FPFISEEQVDKLLTEKDDYYVAARVTDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMERVFSTVHSCLDSSQNSCLSDRIMAAALIKY 121
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BLAST of mRNA_F-serratus_M_contig134.2539.1 vs. uniprot
Match: A0A6H5KPF8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.130e-20
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 3 
Query:  378 PFGTAEVIGSLVLEKDEY-ISLLLPWMSYDLWEFWRDNRLRLPHWYGVAKDIALIQPSSAFMERVFFMLPSYMDKRQEKSFSDRIAAFALLKYTT 659
            PF T  V+ +LV E D Y ++        DLW FW DNRL+L  WY VAKDIALIQPSSAFMERVF +L + +D RQE    DRI A ALLKY +
Sbjct:   56 PFVTPTVVAALVEEMDAYNVAAAETDAGCDLWAFWHDNRLKLSAWYKVAKDIALIQPSSAFMERVFSVLRACVDDRQEHCLLDRIEAAALLKYNS 150
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BLAST of mRNA_F-serratus_M_contig134.2539.1 vs. uniprot
Match: A0A6H5KCX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.180e-18
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 3 
Query:  378 PFGTAEVIGSLVLEKDEYISLLLPW-MSYDLWEFWRDNRLRLPHWYGVAKDIALIQPSSAFMERVFFMLPSYMDKRQEKSFSDRIAAFALLKYTTEDEENKS 680
            PF  ++++  L+ EK++Y        + Y    FW+DN  RLP W+ +  D+AL+QPSSAFMERVF +LP   ++RQE  +SDRI A ALLKY     +N S
Sbjct:   59 PFVKSKMVKGLLKEKEDYYMAASDTDIEYGHMAFWKDNEKRLPTWHALVLDVALLQPSSAFMERVFSILPCCFNERQEHVYSDRICASALLKYNRGRAQNSS 160
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BLAST of mRNA_F-serratus_M_contig134.2539.1 vs. uniprot
Match: A0A6H5L6R8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.180e-17
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 3 
Query:  375 FPFGTAEVIGSLVLEKDEY-ISLLLPWMSYDLWEFWRDNRLRLPHWYGVAKDIALIQPSSAFMERVFFMLPSYMDKRQEKSFSDRIAAFALLKY 653
            FPF + E +  L+ EKD+Y ++  +    YD W+FW+D++ +LP W+ V  DIAL+QPSSAFMERVF  + S +D  Q    SDRI A AL+KY
Sbjct:  431 FPFISEEQVDKLLTEKDDYYVAARVTDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMERVFSTVRSCLDSSQNSCLSDRIMA-ALIKY 523
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BLAST of mRNA_F-serratus_M_contig134.2539.1 vs. uniprot
Match: A0A6H5JZH8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.270e-15
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 3 
Query:  375 FPFGTAEVIGSLVLEKDE-YISLLLPWMSYDLWEFWRDNRLRLPHWYGVAKDIALIQPSSAFMERVFFMLPSYMDKRQEKSFSDRIAAFALLKYTTEDEENKSV 683
            FPF   +++  L+ EK++ Y++       YD   FW DN+  LP W+ +  D+ L+QPSSAFMERVF +L     +RQE  +SDRI A ALLKY+     N+ +
Sbjct:  294 FPFVDDDMMDGLLKEKNDFYVAATDTDTDYDNMTFWSDNKKNLPTWHELVLDVVLLQPSSAFMERVFSILRCCFSERQESVYSDRICASALLKYSRGRGSNRGL 397
[Close]
BLAST of mRNA_F-serratus_M_contig134.2539.1 vs. uniprot
Match: A0A6H5JEX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.800e-15
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 3 
Query:  378 PFGTAEVIGSLVLEKDE-YISLLLPWMSYDLWEFWRDNRLRLPHWYGVAKDIALIQPSSAFMERVFFMLPSYMDKRQEKSFSDRIAAFALLKYTTEDEENKS 680
            PF   +++  L+ EK++ Y++       Y    FW DN+ +LP W+ +  D+AL+QPSSAFMERVF +L    ++RQE  +SDRI A  LLKY     ++ S
Sbjct:   59 PFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRGRAQSSS 160
[Close]
BLAST of mRNA_F-serratus_M_contig134.2539.1 vs. uniprot
Match: A0A6H5K1T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T8_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.330e-15
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  193 EQVRKEMQAVQLYMWERIGDHDEAEQREAIAIYKTARLLNFRFVKQHELSIEDMNPLSGVRFLS---VRLKSLAA*C 414
            E VRK+M  VQ Y WERIGDH  AEQRE+IA+++ ARL +FR+VKQH+L++ D++ L    F+S    RLK     C
Sbjct:    7 EHVRKDMLPVQTYTWERIGDHPNAEQRESIALFQAARLFDFRYVKQHQLNVADIDLLDRFPFVSEDFARLKDQMVDC 83
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JIR3_9PHAE1.920e-3055.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI8_9PHAE5.950e-2359.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JW81_9PHAE4.130e-2155.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4E0_9PHAE7.460e-2148.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KPF8_9PHAE1.130e-2056.84Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KCX4_9PHAE1.180e-1845.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R8_9PHAE1.180e-1748.94Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JZH8_9PHAE3.270e-1542.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEX4_9PHAE4.800e-1541.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1T8_9PHAE9.330e-1551.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig134contigF-serratus_M_contig134:649287..650277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size816
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig134.2539.1prot_F-serratus_M_contig134.2539.1Fucus serratus malepolypeptideF-serratus_M_contig134 649324..649650 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929317.7749183-UTR-F-serratus_M_contig134:649286..6493231622929317.7749183-UTR-F-serratus_M_contig134:649286..649323Fucus serratus maleUTRF-serratus_M_contig134 649287..649323 -
1690962796.7173038-UTR-F-serratus_M_contig134:649286..6493231690962796.7173038-UTR-F-serratus_M_contig134:649286..649323Fucus serratus maleUTRF-serratus_M_contig134 649287..649323 -
1622929317.8311002-UTR-F-serratus_M_contig134:649650..6499341622929317.8311002-UTR-F-serratus_M_contig134:649650..649934Fucus serratus maleUTRF-serratus_M_contig134 649651..649934 -
1690962796.7356358-UTR-F-serratus_M_contig134:649650..6499341690962796.7356358-UTR-F-serratus_M_contig134:649650..649934Fucus serratus maleUTRF-serratus_M_contig134 649651..649934 -
1622929317.842681-UTR-F-serratus_M_contig134:650109..6502771622929317.842681-UTR-F-serratus_M_contig134:650109..650277Fucus serratus maleUTRF-serratus_M_contig134 650110..650277 -
1690962796.74471-UTR-F-serratus_M_contig134:650109..6502771690962796.74471-UTR-F-serratus_M_contig134:650109..650277Fucus serratus maleUTRF-serratus_M_contig134 650110..650277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929317.7902412-CDS-F-serratus_M_contig134:649323..6496501622929317.7902412-CDS-F-serratus_M_contig134:649323..649650Fucus serratus maleCDSF-serratus_M_contig134 649324..649650 -
1690962796.7280068-CDS-F-serratus_M_contig134:649323..6496501690962796.7280068-CDS-F-serratus_M_contig134:649323..649650Fucus serratus maleCDSF-serratus_M_contig134 649324..649650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig134.2539.1

>prot_F-serratus_M_contig134.2539.1 ID=prot_F-serratus_M_contig134.2539.1|Name=mRNA_F-serratus_M_contig134.2539.1|organism=Fucus serratus male|type=polypeptide|length=109bp
MSYDLWEFWRDNRLRLPHWYGVAKDIALIQPSSAFMERVFFMLPSYMDKR
QEKSFSDRIAAFALLKYTTEDEENKSVLFLESVHGGMSCGLYTVVPSWIS
VFRIQRFG*
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mRNA from alignment at F-serratus_M_contig134:649287..650277-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig134.2539.1 ID=mRNA_F-serratus_M_contig134.2539.1|Name=mRNA_F-serratus_M_contig134.2539.1|organism=Fucus serratus male|type=mRNA|length=991bp|location=Sequence derived from alignment at F-serratus_M_contig134:649287..650277- (Fucus serratus male)
CGCACACCTTCTTACCCTGCCTTTGTTTTTCAATAGCTACCCGTGGCGTA
TGACGCCATCACCAGAGTGCGCATGGGACTTGCCCTGCAGCGGGGAAACG
ACGGCGCCTTTGGCTCCCCCCACCTGTCCAACGTCAACGCCTTGCTCCGC
GAATACTGCGAAGACAACGTGAGTTGATAACTGCTGTGTGCGAAGGACAG
CGGCTGGGTGGCCGCCTCAAAAGTAAAAAACCGCGGTGCGAGGGTTGTGA
GATAGTACGCGCACGTTCATCTCGCTGACTTGTTGACCCACTACTCCTCT
CCCCTTCTCCCATTATTTTGGCTTGGTATGTTGATGGTGACAGGCTGCAA
TGAAAGCCCAGTGGTAGGAACAAGTGCGCAAGGAAATGCAGGCCGTCCAG
CTGTACATGTGGGAGAGGATCGGGGACCATGACGAAGCCGAGCAACGCGA
GGCTATCGCAATCTACAAGACTGCGCGACTCCTGAACTTCCGCTTCGTCA
AGCAGCATGAGTTGTCCATTGAGGACATGAACCCGCTCTCGGGGGTCCGT
TTCCTTTCGGTACGGCTGAAGTCATTGGCAGCCTAGTGCTGGAGAAGGAC
GAGTATATATCGTTGCTTCTACCGTGGATGTCATACGACTTGTGGGAATT
TTGGCGTGACAATAGGCTTAGGCTTCCTCATTGGTACGGTGTAGCAAAGG
ACATCGCCTTGATCCAGCCGTCTTCCGCGTTCATGGAACGGGTGTTTTTT
ATGCTGCCTTCATACATGGACAAGAGACAGGAGAAGAGCTTCAGCGACCG
CATTGCCGCATTCGCCCTCCTCAAGTACACAACAGAGGACGAGGAAAATA
AAAGTGTTTTGTTTCTGGAAAGCGTACATGGGGGGATGTCGTGCGGTCTG
TATACTGTCGTCCCCTCTTGGATTAGCGTGTTCAGGATTCAAAGATTTGG
GTAGTGGATCAGGGATAAAGGATAAGGGGCGAGAGTTTTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig134:649287..650277-

>mRNA_F-serratus_M_contig134.2539.1 ID=mRNA_F-serratus_M_contig134.2539.1|Name=mRNA_F-serratus_M_contig134.2539.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig134:649287..650277- (Fucus serratus male)
ATGTCATACGACTTGTGGGAATTTTGGCGTGACAATAGGCTTAGGCTTCC
TCATTGGTACGGTGTAGCAAAGGACATCGCCTTGATCCAGCCGTCTTCCG
CGTTCATGGAACGGGTGTTTTTTATGCTGCCTTCATACATGGACAAGAGA
CAGGAGAAGAGCTTCAGCGACCGCATTGCCGCATTCGCCCTCCTCAAGTA
CACAACAGAGGACGAGGAAAATAAAAGTGTTTTGTTTCTGGAAAGCGTAC
ATGGGGGGATGTCGTGCGGTCTGTATACTGTCGTCCCCTCTTGGATTAGC
GTGTTCAGGATTCAAAGATTTGGGTAGATGTCATACGACTTGTGGGAATT
TTGGCGTGACAATAGGCTTAGGCTTCCTCATTGGTACGGTGTAGCAAAGG
ACATCGCCTTGATCCAGCCGTCTTCCGCGTTCATGGAACGGGTGTTTTTT
ATGCTGCCTTCATACATGGACAAGAGACAGGAGAAGAGCTTCAGCGACCG
CATTGCCGCATTCGCCCTCCTCAAGTACACAACAGAGGACGAGGAAAATA
AAAGTGTTTTGTTTCTGGAAAGCGTACATGGGGGGATGTCGTGCGGTCTG
TATACTGTCGTCCCCTCTTGGATTAGCGTGTTCAGGATTCAAAGATTTGG
GTAG
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