mRNA_F-serratus_M_contig134.2538.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig134.2538.1
Unique NamemRNA_F-serratus_M_contig134.2538.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: D8LGP7_ECTSI (Cyclin D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP7_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.780e-62
Identity = 203/594 (34.18%), Postives = 258/594 (43.43%), Query Frame = 1
Query:    1 KTQIAGFFGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTPVFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEA----------------------WQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAILLSVSHSARAGAPTPDSASPAAVSPGPVATTSHKQVLDTYCRTVA--------------------GVASLHRVLDCVQLLGTSLAESYPAVAAAAGVTAAEVARYADRVGAFKGGVQTLGLSSGTAPKQTALITPTLA---------------ALPAKSRRCCTPTGVEGIMHIETAAAEGR-------------------IGGASVGGGVKPEP--AKLGVRNLTASNG-------KKSGSKHPRPTP------------------------CSTRNRHHGDAFTLSEEDVAFARAVKRSKSGIGASRGVPAAVNGQHHRQPSARKRSSIGSRVASRRPVSDSQPQEQNTRSVAGSSSLQLFSSAPCPLSVGRGNGGKSTGFTSAQ-----LRSRMRSAEALGHCESGSGFGAPAPR 1440
            + Q+A F GY+RDTVAVALNY DRYT    C+P LAQAVA T+LHIAAKFEE  PA LR+L+K+TPVFT +QLL +E+S+LKVL+W+LRPVTVYD +R FC++L +                        Q R+  K   +E+++LR+ AE+IAD +++DV FV+F+PST+A +A+                 AS        V  TSH  VLD   +  A                    GVASL RVL+CVQLLG+SLAE YPAVA+AA   A  VARYA             GL     P+ T+ + P                   +  K RRC TPTGVEGIMHIE     G                    I GAS G G       A +G   L            ++   +H RPTP                             R    +F  S +D+AF+RA K+ ++                                                                 P +     GG   G  +A+        R RSAEALGHCESGSGFGAPA R
Sbjct:   77 ENQMATFLGYNRDTVAVALNYFDRYTCEKRCSPTLAQAVAATALHIAAKFEETNPASLRQLLKYTPVFTPEQLLVMEMSLLKVLNWDLRPVTVYDFVRAFCALLVQGEASSHAAXXXXXXXXXXXXXXXXQAREEKK---EELKRLRVWAEDIADLASFDVRFVDFLPSTLATAALXXXXXXXXXXXXXXXXXAS--------VRPTSHADVLDACWKGPAEADAASDGAAAAAVDGCGGTGVASLRRVLECVQLLGSSLAERYPAVASAARSAAEGVARYA-------------GLP---VPRGTSSVPPRXXXXXXXXXXXXXXXXXVVAVKGRRCTTPTGVEGIMHIEMDTLRGDEAGLQQQQHQPSEHKMPGGIDGASAGCGXXXXXXXAPVGREGLAPGGSVHVKLEHEQPQRRHRRPTPIIXXXXXXXXXXXXXXXXXXXXXXARAGRRGSSSSFACSYDDIAFSRATKQKRAXX----------------------------------------XXXXXXXXXXXXXXXXXXXXXXXPRATAVAAGGDVNGAVAAESAVMSCNIRKRSAEALGHCESGSGFGAPAAR 603          
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A6H5L1G7_9PHAE (CYCLIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G7_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.530e-48
Identity = 185/571 (32.40%), Postives = 239/571 (41.86%), Query Frame = 1
Query:    1 KTQIAGFFGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTPVFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPE----------------------AWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAILLSVSHSARAGAPTPDSASPAAVSPGPVATTSHKQVLDTYCRTVA-----------------GVASLHRVLDCVQLLGTSLAESYPAVAAAAGVTAAEVARYADRVGAFKGGVQTLGLSSGTAPKQTALITPTLAALPAKSRRCCTPTGVEGIMHIETAAAEGR-------------------------------------IGGASVGGG----VKPE----------PAKLGVRNLTASNGKKSGS-KHPRPTPCSTRNRHHGDAFTLSEEDVAFARAVKRSKSGIGASRGVPAAVNGQHHRQPSARKRSSIGSRVASRRPVSDSQPQEQNTRSVAGSSSLQLFSSAPCPLSVGRGNGGKSTGFTSAQLRSRMRSAEALGHCESGSGFGAPAPR 1440
            + Q+A F GY+RDTVAVALNY DRYT    C+P LAQAVA T+LH AAKFEE +PA L                        VL+W+LRPVTVYD +R FC++L +                      + Q R+  K   +E+E+L + AE+IAD +++DV FV F+PST+A +A+                           V  TSH +VLD   +  A                 GVASL RVL+CV LLG+SLAE YPAVA+AA   A  VARYA        G   +      A ++ A    T   +  K RRC TPTGVEGI+HIE     G                                      +GG  +G G    VK E          P  +      A+N   +G  +H   TP     R    +F  S +DVAF+RA K +++   A                   + +++                       AGS                  NG  + G +      R RSAEALGHCESGSGFGAPA R
Sbjct:  173 ENQMATFLGYNRDTVAVALNYFDRYTCEKRCSPTLAQAVAATALHTAAKFEETKPASL------------------------VLNWDLRPVTVYDFVRAFCALLVQGEGSSHAAAASTSGVGGASVSVSLQAREEKK---EELERLGVWAEDIADLASFDVRFVNFLPSTLATAALXXXXXXXXXXXXXXXXX--------XXVPPTSHAEVLDVCWKGPAEADAASDGAAIDGCGGTGVASLRRVLECVLLLGSSLAERYPAVASAARSAAEGVARYAGFP--VPSGTSNVPPRREPAGRKRAAQAATPPVVAVKGRRCATPTGVEGIVHIEMDTLRGGEAGLQQQQHQPSEHKPRGSGDGALAXXXXXXXXSSAPVGGEGLGPGGSVHVKQEHQLPQGRHRRPTPIITAAAGAANNSAAGQPQHQDHTPACAEMRGSSSSFAYSGDDVAFSRATKHTRAAATAXXXXXXXXXXXXXXXXXXPRATAVD----------------------AGSDM----------------NGAVAAGSSLMSCNIRKRSAEALGHCESGSGFGAPATR 668          
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A7S3PMV0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMV0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.380e-8
Identity = 48/149 (32.21%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   22 FGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAIL 465
            F  S+DTVAVA+NY+DRY S ++   ++ Q +A+ ++ IAAK  E  P  + EL      ++    +  +EL +L+V+ W+L PVT    +      + ++ +KRK           LR  AE   D +  +  F+ ++PS   +SAIL
Sbjct:   82 FRISQDTVAVAVNYMDRYLSQISTKKSILQLLAMGAVFIAAKLHETYPIGMSELQTLAEGMYLESDIKLMELELLRVIQWQLNPVTPQTVMNHMVCYV-DSPEKRKL----------LREHAEAFLDVALCEYEFIGYLPSVQGVSAIL 219          
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A7S2QV39_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QV39_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.230e-8
Identity = 48/160 (30.00%), Postives = 82/160 (51.25%), Query Frame = 1
Query:    7 QIAGFFGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAILLSVSHS 483
            Q+A  +  SR+TV++A+++LDRY S    N    Q  ++T+  +AAK +E RP  +  LI  +  VF  + L ++E  +L+ L W + P T    +R F   L E           E  +  +  +AE   + S  +  F+ F P T+A+++IL++   S
Sbjct:  103 QVADAYHLSRETVSIAMSFLDRYLSKTTVNKKFFQLASMTAFFLAAKMQESRPVKMSNLINLSRGVFKVQDLKSMEKVMLRQLKWHINPPTPGSFVRLFLYYLEEE---------SEAILRSVLEVAEWSTELSTVEYYFIRFKPRTVAMASILIAFEKS 253          
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: E0CPN3_VITVI (Cyclin N-terminal domain-containing protein n=4 Tax=Vitis TaxID=3603 RepID=E0CPN3_VITVI)

HSP 1 Score: 62.8 bits (151), Expect = 6.710e-7
Identity = 48/156 (30.77%), Postives = 82/156 (52.56%), Query Frame = 1
Query:    7 QIAGFFGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAILLS 471
            ++A  +  + DT+ + ++Y+DR+ S  A N    Q + V+S+ IAAK+EE  P  + +    T   +T ++++ +E  ILK L++E+   T+   +R F  +  E + K  N         QL  L   +A+ S  D   V+F+PS +A S I LS
Sbjct:  140 EVAEEYKLASDTLYLTISYIDRFLSSKALNRQRLQLLGVSSMLIAAKYEEISPPHVEDFCYITDNTYTKEEVVKMEADILKSLNFEMGNPTIKTFLRRFTRIAQENY-KTPNL--------QLEFLVYYLAELSLLDYGCVKFLPSMVAASVIFLS 286          
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: UPI000A2A6074 (G2/mitotic-specific cyclin-A n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A6074)

HSP 1 Score: 61.6 bits (148), Expect = 2.110e-6
Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = 1
Query:   40 TVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEIADFSAYDVS-FVEFVPSTMAISAILLSV 474
            T+ + +NY+DR+ S+M+      Q V    + +A+KFEE  P  + E +  T   +TAKQLL +E  +LK L ++L   T  + +  +           K  K  E    ++  LA  + + S  D   F+E+VPST+A SA++LS+
Sbjct:  243 TLYLTVNYIDRFLSMMSVLRGKLQLVGTACMLLASKFEEIYPPEVSEFVYITDDTYTAKQLLKMEQLVLKALTFDLSVPTTLNFLERYL----------KATKAPENLAPKVESLARYLCEISLLDCDPFLEYVPSTIAASAVVLSL 379          
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: UPI00098E406C (cyclin-A3-1-like isoform X1 n=2 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E406C)

HSP 1 Score: 60.8 bits (146), Expect = 2.720e-6
Identity = 45/155 (29.03%), Postives = 80/155 (51.61%), Query Frame = 1
Query:    7 QIAGFFGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAILL 468
            ++A  +  + DT+ + ++Y+DRY S    N    Q + V+++ IA+K+EE  P  + +    T   +T ++++ +E  ILK L++E+   T+   +R F     +  +    N         L  LA  IA+ S  D   V+F+PST+A SA+ L
Sbjct:  135 EVAEEYKLASDTLYLTISYIDRYLSSNVLNRQKLQLLGVSAMLIASKYEEITPPHVEDFCYITDNTYTKQEVVKMESDILKFLNFEMGNPTIKTFLRRFIKAGLDDSKYNDLN---------LEFLANYIAELSLVDYGCVQFLPSTVAASAVFL 280          
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A2R5GFP5_9STRA (G1/S-specific cyclin-D2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFP5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.380e-6
Identity = 44/156 (28.21%), Postives = 75/156 (48.08%), Query Frame = 1
Query:   22 FGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEIADFSAY---DVSFVEFVPSTMAISAILLSVS 477
            +G S++T+AVA+NY+DRY S ++   ++ Q +A+ S+ +A K  E  P  + EL       +    +  +EL +L+V+ W+L PVT    +      +P                E  R+L EE   F      +  F+ F PS +  +A+L + S
Sbjct:  143 YGISQETIAVAVNYMDRYLSEISTKRSILQLLAMGSIFVATKLHETFPIGMHELRDLADGTYLESDIKLMELELLRVIQWKLTPVTPQSFMAHIIQFIPCP--------------ETRRVLHEEAVTFLDVVIPEYEFLHFTPSVIGTAAVLCAFS 284          
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A7S4RBU3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBU3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.070e-6
Identity = 43/156 (27.56%), Postives = 73/156 (46.79%), Query Frame = 1
Query:    7 QIAGFFGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEI--ADFSAYDVSFVEFVPSTMAISAIL 465
            +I  ++  SR+ VA+A ++LDR+     C+    +  A+T LH+A+K    +   +  L K +   F  K +  +E  IL  L W L P +V   +   C+ +P   ++ +            RI    +  A+ S  D  FV   PS +AI+A+L
Sbjct:   79 RIVDYYSASREIVAIAFSFLDRFLDKCHCDRTAFKLAAMTCLHLASKITSSKQFSVSTLAKLSRGEFDEKHIADMENIILNTLGWHLHPPSVLSFLHHLCAAIPTTDERLRR-----------RIFHHAVFFAELSVLDYFFVPHKPSAIAIAAVL 223          
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A7S1GM69_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GM69_CYCTE)

HSP 1 Score: 59.7 bits (143), Expect = 5.560e-6
Identity = 53/161 (32.92%), Postives = 85/161 (52.80%), Query Frame = 1
Query:    7 QIAGFFGYSRDTVAVALNYLDRY--TSL---MACNPALAQAVAVTSLHIAAKFEEPR---PAPLRELIKFTPVFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLP-EAWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAI 462
            Q+  F  ++R+TVA+A+++LDRY  TS+      N  L Q  A+TSL+ A K  EP    P  +  L + T  +T +Q+ T+E SIL  + W + P T    +  F ++LP EA  + +N    E        L++   + +  D SFV    ST+A++A+
Sbjct:   97 QVVDFCHFNRETVAIAMSFLDRYLMTSIGRNALENRKLFQLAAMTSLYTAIKIHEPEAMEPKVVAGLSRGT--YTEEQVTTMEASILGAIQWRMNPPTALAFVHHFLALLPAEALTEEENMTVLE--------LSKCQTELAVKDYSFVGVKASTIALAAL 247          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP7_ECTSI1.780e-6234.18Cyclin D3 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5L1G7_9PHAE2.530e-4832.40CYCLIN domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3PMV0_9STRA1.380e-832.21Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2QV39_9STRA3.230e-830.00Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
E0CPN3_VITVI6.710e-730.77Cyclin N-terminal domain-containing protein n=4 Ta... [more]
UPI000A2A60742.110e-631.97G2/mitotic-specific cyclin-A n=1 Tax=Exaiptasia di... [more]
UPI00098E406C2.720e-629.03cyclin-A3-1-like isoform X1 n=2 Tax=Asparagus offi... [more]
A0A2R5GFP5_9STRA4.380e-628.21G1/S-specific cyclin-D2 n=1 Tax=Hondaea fermentalg... [more]
A0A7S4RBU3_9STRA5.070e-627.56Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1GM69_CYCTE5.560e-632.92Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig134contigF-serratus_M_contig134:633382..636437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue2.9e-47
Seed eggNOG ortholog2880.D8LGP7
Preferred nameCCNE1
KEGG koko:K06626,ko:K21777
KEGG Pathwayko04110,ko04114,ko04115,ko04151,ko04218,ko04391,ko04934,ko05161,ko05162,ko05165,ko05200,ko05203,ko05206,ko05215,ko05222,ko05226,map04110,map04114,map04115,map04151,map04218,map04391,map04934,map05161,map05162,map05165,map05200,map05203,map05206,map05215,map05222,map05226
KEGG ModuleM00692
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000079,GO:0000082,GO:0000083,GO:0000122,GO:0000278,GO:0000280,GO:0000307,GO:0000723,GO:0000785,GO:0001541,GO:0001547,GO:0001654,GO:0001708,GO:0001709,GO:0001745,GO:0001889,GO:0001932,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0002165,GO:0003006,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006277,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007088,GO:0007096,GO:0007127,GO:0007129,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007276,GO:0007277,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007399,GO:0007400,GO:0007422,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007548,GO:0007552,GO:0007560,GO:0007584,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008356,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009605,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009790,GO:0009791,GO:0009792,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010927,GO:0010941,GO:0010942,GO:0014016,GO:0014017,GO:0014070,GO:0014074,GO:0015630,GO:0016043,GO:0016055,GO:0016301,GO:0016310,GO:0016538,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022602,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030182,GO:0030234,GO:0030518,GO:0030521,GO:0030522,GO:0030703,GO:0030707,GO:0030855,GO:0031099,GO:0031100,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031960,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032269,GO:0032355,GO:0032501,GO:0032502,GO:0032504,GO:0032570,GO:0032870,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033043,GO:0033197,GO:0033273,GO:0033993,GO:0034097,GO:0034641,GO:0034645,GO:0034654,GO:0035019,GO:0035107,GO:0035112,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035257,GO:0035258,GO:0035262,GO:0035295,GO:0035736,GO:0036211,GO:0040007,GO:0040026,GO:0040028,GO:0040035,GO:0042023,GO:0042127,GO:0042221,GO:0042325,GO:0042493,GO:0042592,GO:0042698,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043401,GO:0043412,GO:0043549,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044719,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0044877,GO:0045035,GO:0045132,GO:0045137,GO:0045143,GO:0045165,GO:0045471,GO:0045595,GO:0045597,GO:0045786,GO:0045787,GO:0045859,GO:0045892,GO:0045893,GO:0045930,GO:0045931,GO:0045934,GO:0045935,GO:0046425,GO:0046427,GO:0046483,GO:0046545,GO:0046660,GO:0046677,GO:0048285,GO:0048468,GO:0048477,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048563,GO:0048569,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048589,GO:0048592,GO:0048608,GO:0048609,GO:0048646,GO:0048663,GO:0048665,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048737,GO:0048749,GO:0048806,GO:0048815,GO:0048856,GO:0048863,GO:0048865,GO:0048867,GO:0048869,GO:0050681,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051094,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051301,GO:0051302,GO:0051321,GO:0051338,GO:0051348,GO:0051384,GO:0051385,GO:0051412,GO:0051427,GO:0051438,GO:0051444,GO:0051445,GO:0051446,GO:0051597,GO:0051704,GO:0051716,GO:0051726,GO:0051728,GO:0051729,GO:0051782,GO:0051783,GO:0060184,GO:0060249,GO:0060255,GO:0060341,GO:0060429,GO:0060562,GO:0061008,GO:0061062,GO:0061063,GO:0061458,GO:0061695,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070192,GO:0070887,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0071850,GO:0071897,GO:0071900,GO:0080090,GO:0090066,GO:0090068,GO:0090304,GO:0090596,GO:0097134,GO:0097135,GO:0097305,GO:0097472,GO:0098727,GO:0098772,GO:0098813,GO:0140013,GO:0140096,GO:0140110,GO:0198738,GO:1900087,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901654,GO:1901698,GO:1901700,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902494,GO:1902531,GO:1902533,GO:1902554,GO:1902679,GO:1902680,GO:1902806,GO:1902808,GO:1902911,GO:1903046,GO:1903047,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1903508,GO:1903827,GO:1903829,GO:1904029,GO:1904375,GO:1904666,GO:1904667,GO:1904776,GO:1904779,GO:1904781,GO:1904892,GO:1904894,GO:1905114,GO:1990234,GO:2000026,GO:2000045,GO:2000112,GO:2000113,GO:2000241,GO:2000243,GO:2001141
EggNOG free text desc.Belongs to the cyclin family
EggNOG OGsCOG5024@1,KOG0655@2759
Ec32 ortholog descriptioncyclin D3
Ec32 orthologEc-07_005490.1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Exons4
Model size1687
Cds size1401
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig134.2538.1prot_F-serratus_M_contig134.2538.1Fucus serratus malepolypeptideF-serratus_M_contig134 633466..636235 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929317.6490693-UTR-F-serratus_M_contig134:633381..6334651622929317.6490693-UTR-F-serratus_M_contig134:633381..633465Fucus serratus maleUTRF-serratus_M_contig134 633382..633465 +
1690962796.652559-UTR-F-serratus_M_contig134:633381..6334651690962796.652559-UTR-F-serratus_M_contig134:633381..633465Fucus serratus maleUTRF-serratus_M_contig134 633382..633465 +
1622929317.7240186-UTR-F-serratus_M_contig134:636235..6364371622929317.7240186-UTR-F-serratus_M_contig134:636235..636437Fucus serratus maleUTRF-serratus_M_contig134 636236..636437 +
1690962796.7054188-UTR-F-serratus_M_contig134:636235..6364371690962796.7054188-UTR-F-serratus_M_contig134:636235..636437Fucus serratus maleUTRF-serratus_M_contig134 636236..636437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929317.6630306-CDS-F-serratus_M_contig134:633465..6335551622929317.6630306-CDS-F-serratus_M_contig134:633465..633555Fucus serratus maleCDSF-serratus_M_contig134 633466..633555 +
1690962796.6635897-CDS-F-serratus_M_contig134:633465..6335551690962796.6635897-CDS-F-serratus_M_contig134:633465..633555Fucus serratus maleCDSF-serratus_M_contig134 633466..633555 +
1622929317.6817944-CDS-F-serratus_M_contig134:634126..6341981622929317.6817944-CDS-F-serratus_M_contig134:634126..634198Fucus serratus maleCDSF-serratus_M_contig134 634127..634198 +
1690962796.671402-CDS-F-serratus_M_contig134:634126..6341981690962796.671402-CDS-F-serratus_M_contig134:634126..634198Fucus serratus maleCDSF-serratus_M_contig134 634127..634198 +
1622929317.6969874-CDS-F-serratus_M_contig134:634533..6346991622929317.6969874-CDS-F-serratus_M_contig134:634533..634699Fucus serratus maleCDSF-serratus_M_contig134 634534..634699 +
1690962796.6796803-CDS-F-serratus_M_contig134:634533..6346991690962796.6796803-CDS-F-serratus_M_contig134:634533..634699Fucus serratus maleCDSF-serratus_M_contig134 634534..634699 +
1622929317.711057-CDS-F-serratus_M_contig134:635162..6362351622929317.711057-CDS-F-serratus_M_contig134:635162..636235Fucus serratus maleCDSF-serratus_M_contig134 635163..636235 +
1690962796.68849-CDS-F-serratus_M_contig134:635162..6362351690962796.68849-CDS-F-serratus_M_contig134:635162..636235Fucus serratus maleCDSF-serratus_M_contig134 635163..636235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig134.2538.1

>prot_F-serratus_M_contig134.2538.1 ID=prot_F-serratus_M_contig134.2538.1|Name=mRNA_F-serratus_M_contig134.2538.1|organism=Fucus serratus male|type=polypeptide|length=467bp
MACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTPVFTAKQLLTIEL
SILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILA
EEIADFSAYDVSFVEFVPSTMAISAILLSVSHSARAGAPTPDSASPAAVS
PGPVATTSHKQVLDTYCRTVAGVASLHRVLDCVQLLGTSLAESYPAVAAA
AGVTAAEVARYADRVGAFKGGVQTLGLSSGTAPKQTALITPTLAALPAKS
RRCCTPTGVEGIMHIETAAAEGRIGGASVGGGVKPEPAKLGVRNLTASNG
KKSGSKHPRPTPCSTRNRHHGDAFTLSEEDVAFARAVKRSKSGIGASRGV
PAAVNGQHHRQPSARKRSSIGSRVASRRPVSDSQPQEQNTRSVAGSSSLQ
LFSSAPCPLSVGRGNGGKSTGFTSAQLRSRMRSAEALGHCESGSGFGAPA
PRITKADTAPPAAPAR*
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mRNA from alignment at F-serratus_M_contig134:633382..636437+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig134.2538.1 ID=mRNA_F-serratus_M_contig134.2538.1|Name=mRNA_F-serratus_M_contig134.2538.1|organism=Fucus serratus male|type=mRNA|length=3056bp|location=Sequence derived from alignment at F-serratus_M_contig134:633382..636437+ (Fucus serratus male)
AAGACCCAAATAGCCGGTTTTTTCGGTTACAGCCGGGACACGGTAGCGGT GGCCCTGAACTACTTGGACCGGTACACGTCCCTGATGGCGTGCAACCCAG CCCTGGCGCAGGCCGTCGCGGTAACTTCGCTGCACATCGCCGCCAAGTTC GAAGAACCCAGACCGGCCCCTCTGGTGAGAAATCTAATAGACCACGAGAG TGCGAGAGCGGTGCTGCAGCCCCTCTGGACGACGGATTTAGTTGGCGGGG ACTGTGATTCTTTATTTCCACTCTCCCTGTTCCAAGATTAGAACGTCTCG TGTGGAAGAAAGGTTGTGTGCAGAAGTGCATCGCTGTTGAGAGGAACCCG AATTAGTGGGCAAGCCGCGTCCCTTCGCCATACAGTATACCGAGCGCTCT GACTTTAAACGATATTTTGTCGTCGAAGCACACTGGAAAATTAAATCAAG ATCGCGGTACGGCCGTCACAAGGACTTAGAACCGAGCACATTCTCTCTGG TGGCGGGGACTCCAGCTGTTGAATCACGTCGAGTGTTTTTATCGGAGCGT TACGGCAGCGGCGGTGCGCTGTTTTGCTACCTGCCCGTGCAGAGCCTCTG GCGTAACTGCCCATCCTCTGTTGCGATTTTTATACGAAAAAGTTTCATGT TAGAAAAAATAAAAATCAGCGATATGTTTTCTCTCCGTCATCAATCGTTC CCGGCGATGCCGCCTTTTGTTGTCGCATCTTCTGACCCGTGCCAGCGTGA ACTCATCAAGTTTACACCCGTGTTCACAGCCAAGCAGCTTCTGACGATCG AGCTTTCGATCCTTAAGGTGCGTGTCGCGATTCAAGTCCGCGCTTTGATT GTATGCGCCGTGTGCCCTACAACGGTCGTATCAGTGAAAAGAGTTGTAGT CCCGACCTACGCGCAGCTATCCTTGTGCGGTCTGAAAAAGTATACATTTC GTCGCGTTGTCGAAAGAGTCGGTGCTTTTTTTTTACGCCCACGCTCTCGG CAGAAGGTGACAGTGTCAGGCCGTTGTATTTCGCCTCACACCGCCGATCT CCCCACCCACCCCCTCCTCTCTTGCGTTTACTGCCGACCCGGGTCCTCTC CCCCCAACAATCCGTCCCCTTGTTATGAACCACCCCGACGCAAAACGCAC AGGTGCTGGATTGGGAACTCCGCCCTGTGACCGTTTACGACTGCATCCGA GGGTTCTGCAGCGTGCTTCCGGAAGCGTGGCAGAAGAGAAAAAACAACAA GAGAAGAGAGCAGGAGGTCGAGCAGCTAAGGATCTTGGCAGAAGAAATCG CAGACTTCTCTGCCTACGGTGGGTGGTTTTGTTCTTTCAAACCCCACCCG TTCTTTTTGATTATTTTGTCCGGATGAAGAGGGCATGGCTGCCTGAAGAG CAGCGACTCGCGGGTACAAACAGTACGCAGCCATCGTGACTGTTTTCACG CGATCCCCATGCTCCCCTCTCCCATAACTGTCTAAAAACTTAACTACAGG TCGTTATAGTCGGTCGCATTTCTCATATTCCCCTCCAGCAGAAAAGCTGA ATGTATAGGTCTAGAAAAGTACTAACAGGTGTATATATACAGTACCGGAG TTGGCAGCCATTTTGACTGAACATCGTGAACAAGCAGGACCTATCACACG ACGTGCGCCACTCAAGACCGTTAATGCTGTCGGTGTTTCACTCTTCGCCT CCCTCCCTCCCTCCCTCCCTTTTGCCCTTGGTCTTGCCCGTTCGTCCTTC CACCCATCGAATGCTCACGAACAAACAACAGACGTGAGCTTCGTCGAATT CGTGCCCTCCACGATGGCGATCTCGGCCATCCTCCTTTCCGTGTCCCACA GCGCCCGTGCCGGGGCTCCTACACCTGATTCTGCCTCTCCCGCAGCCGTC TCTCCAGGGCCCGTTGCCACCACCTCGCACAAGCAAGTGCTGGACACGTA CTGCAGGACGGTCGCGGGCGTCGCGTCCCTTCATCGAGTACTGGACTGCG TCCAGCTCCTGGGCACTTCCCTTGCCGAGAGCTACCCGGCCGTTGCCGCC GCCGCTGGAGTTACCGCCGCAGAGGTCGCGCGATACGCCGATCGCGTAGG CGCGTTTAAGGGCGGAGTCCAAACTCTGGGCCTGTCTTCAGGGACCGCGC CAAAGCAGACAGCTTTGATCACTCCAACGCTAGCGGCGCTGCCGGCGAAG AGCCGGAGGTGTTGCACGCCTACCGGCGTCGAGGGCATCATGCACATCGA GACGGCGGCCGCGGAGGGACGAATTGGCGGCGCCAGTGTCGGTGGGGGCG TCAAGCCAGAGCCAGCAAAACTTGGCGTACGCAATTTGACAGCGAGTAAC GGCAAAAAGTCCGGCTCAAAGCATCCCCGCCCAACCCCTTGCTCAACACG GAATCGCCACCATGGGGACGCGTTTACGTTGTCTGAGGAGGACGTGGCCT TTGCGAGGGCGGTTAAGCGGAGCAAGAGCGGAATCGGAGCCTCCAGAGGG GTTCCCGCTGCGGTAAACGGTCAGCACCACCGTCAGCCGTCAGCCCGTAA AAGGTCGAGTATCGGCTCGCGCGTGGCGAGCAGGAGACCCGTCAGCGACA GCCAGCCGCAGGAGCAGAATACCCGCTCGGTCGCTGGCAGCTCCTCGTTG CAGCTGTTCTCGTCTGCGCCTTGTCCTCTTTCAGTGGGCCGAGGCAACGG CGGCAAGAGCACCGGTTTCACGTCCGCTCAACTGAGGTCCCGGATGCGGT CAGCGGAGGCTCTTGGCCACTGCGAGAGCGGATCGGGCTTTGGAGCCCCC GCACCGCGGATCACCAAGGCCGATACCGCCCCCCCTGCTGCACCGGCACG TTAGCAGCTAAATAGCGTGCATCCGGCGATCTGATCGCCCATGAAAGGAA GGAAGGACTAGTAACTGTGCAGGCCGAACACGACAGGATTCCGTGGTCGT GCGTGTTCATACGAAAAGTCAAAATTAGCCGCGATTTATGGTTTTTGTTT TCTGTTTTCTGTTTTTCCGCGTGTGGCTCTTCCGTAATTTTTGTGTTTTT AGTTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig134:633382..636437+

>mRNA_F-serratus_M_contig134.2538.1 ID=mRNA_F-serratus_M_contig134.2538.1|Name=mRNA_F-serratus_M_contig134.2538.1|organism=Fucus serratus male|type=CDS|length=2802bp|location=Sequence derived from alignment at F-serratus_M_contig134:633382..636437+ (Fucus serratus male)
ATGGCGTGCAACCCAGCCCTGGCGCAGGCCGTCGCGGTAACTTCGCTGCA
CATCGCCGCCAAGTTCGAAGAACCCAGACCGGCCCCTCTGATGGCGTGCA
ACCCAGCCCTGGCGCAGGCCGTCGCGGTAACTTCGCTGCACATCGCCGCC
AAGTTCGAAGAACCCAGACCGGCCCCTCTGCGTGAACTCATCAAGTTTAC
ACCCGTGTTCACAGCCAAGCAGCTTCTGACGATCGAGCTTTCGATCCTTA
AGCGTGAACTCATCAAGTTTACACCCGTGTTCACAGCCAAGCAGCTTCTG
ACGATCGAGCTTTCGATCCTTAAGGTGCTGGATTGGGAACTCCGCCCTGT
GACCGTTTACGACTGCATCCGAGGGTTCTGCAGCGTGCTTCCGGAAGCGT
GGCAGAAGAGAAAAAACAACAAGAGAAGAGAGCAGGAGGTCGAGCAGCTA
AGGATCTTGGCAGAAGAAATCGCAGACTTCTCTGCCTACGGTGCTGGATT
GGGAACTCCGCCCTGTGACCGTTTACGACTGCATCCGAGGGTTCTGCAGC
GTGCTTCCGGAAGCGTGGCAGAAGAGAAAAAACAACAAGAGAAGAGAGCA
GGAGGTCGAGCAGCTAAGGATCTTGGCAGAAGAAATCGCAGACTTCTCTG
CCTACGACGTGAGCTTCGTCGAATTCGTGCCCTCCACGATGGCGATCTCG
GCCATCCTCCTTTCCGTGTCCCACAGCGCCCGTGCCGGGGCTCCTACACC
TGATTCTGCCTCTCCCGCAGCCGTCTCTCCAGGGCCCGTTGCCACCACCT
CGCACAAGCAAGTGCTGGACACGTACTGCAGGACGGTCGCGGGCGTCGCG
TCCCTTCATCGAGTACTGGACTGCGTCCAGCTCCTGGGCACTTCCCTTGC
CGAGAGCTACCCGGCCGTTGCCGCCGCCGCTGGAGTTACCGCCGCAGAGG
TCGCGCGATACGCCGATCGCGTAGGCGCGTTTAAGGGCGGAGTCCAAACT
CTGGGCCTGTCTTCAGGGACCGCGCCAAAGCAGACAGCTTTGATCACTCC
AACGCTAGCGGCGCTGCCGGCGAAGAGCCGGAGGTGTTGCACGCCTACCG
GCGTCGAGGGCATCATGCACATCGAGACGGCGGCCGCGGAGGGACGAATT
GGCGGCGCCAGTGTCGGTGGGGGCGTCAAGCCAGAGCCAGCAAAACTTGG
CGTACGCAATTTGACAGCGAGTAACGGCAAAAAGTCCGGCTCAAAGCATC
CCCGCCCAACCCCTTGCTCAACACGGAATCGCCACCATGGGGACGCGTTT
ACGTTGTCTGAGGAGGACGTGGCCTTTGCGAGGGCGGTTAAGCGGAGCAA
GAGCGGAATCGGAGCCTCCAGAGGGGTTCCCGCTGCGGTAAACGGTCAGC
ACCACCGTCAGCCGTCAGCCCGTAAAAGGTCGAGTATCGGCTCGCGCGTG
GCGAGCAGGAGACCCGTCAGCGACAGCCAGCCGCAGGAGCAGAATACCCG
CTCGGTCGCTGGCAGCTCCTCGTTGCAGCTGTTCTCGTCTGCGCCTTGTC
CTCTTTCAGTGGGCCGAGGCAACGGCGGCAAGAGCACCGGTTTCACGTCC
GCTCAACTGAGGTCCCGGATGCGGTCAGCGGAGGCTCTTGGCCACTGCGA
GAGCGGATCGGGCTTTGGAGCCCCCGCACCGCGGATCACCAAGGCCGATA
CCGCCCCCCCTGCTGCACCGGCACGTTAGACGTGAGCTTCGTCGAATTCG
TGCCCTCCACGATGGCGATCTCGGCCATCCTCCTTTCCGTGTCCCACAGC
GCCCGTGCCGGGGCTCCTACACCTGATTCTGCCTCTCCCGCAGCCGTCTC
TCCAGGGCCCGTTGCCACCACCTCGCACAAGCAAGTGCTGGACACGTACT
GCAGGACGGTCGCGGGCGTCGCGTCCCTTCATCGAGTACTGGACTGCGTC
CAGCTCCTGGGCACTTCCCTTGCCGAGAGCTACCCGGCCGTTGCCGCCGC
CGCTGGAGTTACCGCCGCAGAGGTCGCGCGATACGCCGATCGCGTAGGCG
CGTTTAAGGGCGGAGTCCAAACTCTGGGCCTGTCTTCAGGGACCGCGCCA
AAGCAGACAGCTTTGATCACTCCAACGCTAGCGGCGCTGCCGGCGAAGAG
CCGGAGGTGTTGCACGCCTACCGGCGTCGAGGGCATCATGCACATCGAGA
CGGCGGCCGCGGAGGGACGAATTGGCGGCGCCAGTGTCGGTGGGGGCGTC
AAGCCAGAGCCAGCAAAACTTGGCGTACGCAATTTGACAGCGAGTAACGG
CAAAAAGTCCGGCTCAAAGCATCCCCGCCCAACCCCTTGCTCAACACGGA
ATCGCCACCATGGGGACGCGTTTACGTTGTCTGAGGAGGACGTGGCCTTT
GCGAGGGCGGTTAAGCGGAGCAAGAGCGGAATCGGAGCCTCCAGAGGGGT
TCCCGCTGCGGTAAACGGTCAGCACCACCGTCAGCCGTCAGCCCGTAAAA
GGTCGAGTATCGGCTCGCGCGTGGCGAGCAGGAGACCCGTCAGCGACAGC
CAGCCGCAGGAGCAGAATACCCGCTCGGTCGCTGGCAGCTCCTCGTTGCA
GCTGTTCTCGTCTGCGCCTTGTCCTCTTTCAGTGGGCCGAGGCAACGGCG
GCAAGAGCACCGGTTTCACGTCCGCTCAACTGAGGTCCCGGATGCGGTCA
GCGGAGGCTCTTGGCCACTGCGAGAGCGGATCGGGCTTTGGAGCCCCCGC
ACCGCGGATCACCAAGGCCGATACCGCCCCCCCTGCTGCACCGGCACGTT
AG
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