mRNA_F-serratus_M_contig134.2538.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: D8LGP7_ECTSI (Cyclin D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP7_ECTSI) HSP 1 Score: 226 bits (577), Expect = 1.780e-62 Identity = 203/594 (34.18%), Postives = 258/594 (43.43%), Query Frame = 1
Query: 1 KTQIAGFFGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTPVFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEA----------------------WQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAILLSVSHSARAGAPTPDSASPAAVSPGPVATTSHKQVLDTYCRTVA--------------------GVASLHRVLDCVQLLGTSLAESYPAVAAAAGVTAAEVARYADRVGAFKGGVQTLGLSSGTAPKQTALITPTLA---------------ALPAKSRRCCTPTGVEGIMHIETAAAEGR-------------------IGGASVGGGVKPEP--AKLGVRNLTASNG-------KKSGSKHPRPTP------------------------CSTRNRHHGDAFTLSEEDVAFARAVKRSKSGIGASRGVPAAVNGQHHRQPSARKRSSIGSRVASRRPVSDSQPQEQNTRSVAGSSSLQLFSSAPCPLSVGRGNGGKSTGFTSAQ-----LRSRMRSAEALGHCESGSGFGAPAPR 1440
+ Q+A F GY+RDTVAVALNY DRYT C+P LAQAVA T+LHIAAKFEE PA LR+L+K+TPVFT +QLL +E+S+LKVL+W+LRPVTVYD +R FC++L + Q R+ K +E+++LR+ AE+IAD +++DV FV+F+PST+A +A+ AS V TSH VLD + A GVASL RVL+CVQLLG+SLAE YPAVA+AA A VARYA GL P+ T+ + P + K RRC TPTGVEGIMHIE G I GAS G G A +G L ++ +H RPTP R +F S +D+AF+RA K+ ++ P + GG G +A+ R RSAEALGHCESGSGFGAPA R
Sbjct: 77 ENQMATFLGYNRDTVAVALNYFDRYTCEKRCSPTLAQAVAATALHIAAKFEETNPASLRQLLKYTPVFTPEQLLVMEMSLLKVLNWDLRPVTVYDFVRAFCALLVQGEASSHAAXXXXXXXXXXXXXXXXQAREEKK---EELKRLRVWAEDIADLASFDVRFVDFLPSTLATAALXXXXXXXXXXXXXXXXXAS--------VRPTSHADVLDACWKGPAEADAASDGAAAAAVDGCGGTGVASLRRVLECVQLLGSSLAERYPAVASAARSAAEGVARYA-------------GLP---VPRGTSSVPPRXXXXXXXXXXXXXXXXXVVAVKGRRCTTPTGVEGIMHIEMDTLRGDEAGLQQQQHQPSEHKMPGGIDGASAGCGXXXXXXXAPVGREGLAPGGSVHVKLEHEQPQRRHRRPTPIIXXXXXXXXXXXXXXXXXXXXXXARAGRRGSSSSFACSYDDIAFSRATKQKRAXX----------------------------------------XXXXXXXXXXXXXXXXXXXXXXXPRATAVAAGGDVNGAVAAESAVMSCNIRKRSAEALGHCESGSGFGAPAAR 603
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A6H5L1G7_9PHAE (CYCLIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G7_9PHAE) HSP 1 Score: 189 bits (479), Expect = 2.530e-48 Identity = 185/571 (32.40%), Postives = 239/571 (41.86%), Query Frame = 1
Query: 1 KTQIAGFFGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTPVFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPE----------------------AWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAILLSVSHSARAGAPTPDSASPAAVSPGPVATTSHKQVLDTYCRTVA-----------------GVASLHRVLDCVQLLGTSLAESYPAVAAAAGVTAAEVARYADRVGAFKGGVQTLGLSSGTAPKQTALITPTLAALPAKSRRCCTPTGVEGIMHIETAAAEGR-------------------------------------IGGASVGGG----VKPE----------PAKLGVRNLTASNGKKSGS-KHPRPTPCSTRNRHHGDAFTLSEEDVAFARAVKRSKSGIGASRGVPAAVNGQHHRQPSARKRSSIGSRVASRRPVSDSQPQEQNTRSVAGSSSLQLFSSAPCPLSVGRGNGGKSTGFTSAQLRSRMRSAEALGHCESGSGFGAPAPR 1440
+ Q+A F GY+RDTVAVALNY DRYT C+P LAQAVA T+LH AAKFEE +PA L VL+W+LRPVTVYD +R FC++L + + Q R+ K +E+E+L + AE+IAD +++DV FV F+PST+A +A+ V TSH +VLD + A GVASL RVL+CV LLG+SLAE YPAVA+AA A VARYA G + A ++ A T + K RRC TPTGVEGI+HIE G +GG +G G VK E P + A+N +G +H TP R +F S +DVAF+RA K +++ A + +++ AGS NG + G + R RSAEALGHCESGSGFGAPA R
Sbjct: 173 ENQMATFLGYNRDTVAVALNYFDRYTCEKRCSPTLAQAVAATALHTAAKFEETKPASL------------------------VLNWDLRPVTVYDFVRAFCALLVQGEGSSHAAAASTSGVGGASVSVSLQAREEKK---EELERLGVWAEDIADLASFDVRFVNFLPSTLATAALXXXXXXXXXXXXXXXXX--------XXVPPTSHAEVLDVCWKGPAEADAASDGAAIDGCGGTGVASLRRVLECVLLLGSSLAERYPAVASAARSAAEGVARYAGFP--VPSGTSNVPPRREPAGRKRAAQAATPPVVAVKGRRCATPTGVEGIVHIEMDTLRGGEAGLQQQQHQPSEHKPRGSGDGALAXXXXXXXXSSAPVGGEGLGPGGSVHVKQEHQLPQGRHRRPTPIITAAAGAANNSAAGQPQHQDHTPACAEMRGSSSSFAYSGDDVAFSRATKHTRAAATAXXXXXXXXXXXXXXXXXXPRATAVD----------------------AGSDM----------------NGAVAAGSSLMSCNIRKRSAEALGHCESGSGFGAPATR 668
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A7S3PMV0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMV0_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.380e-8 Identity = 48/149 (32.21%), Postives = 79/149 (53.02%), Query Frame = 1
Query: 22 FGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAIL 465
F S+DTVAVA+NY+DRY S ++ ++ Q +A+ ++ IAAK E P + EL ++ + +EL +L+V+ W+L PVT + + ++ +KRK LR AE D + + F+ ++PS +SAIL
Sbjct: 82 FRISQDTVAVAVNYMDRYLSQISTKKSILQLLAMGAVFIAAKLHETYPIGMSELQTLAEGMYLESDIKLMELELLRVIQWQLNPVTPQTVMNHMVCYV-DSPEKRKL----------LREHAEAFLDVALCEYEFIGYLPSVQGVSAIL 219
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A7S2QV39_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QV39_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 3.230e-8 Identity = 48/160 (30.00%), Postives = 82/160 (51.25%), Query Frame = 1
Query: 7 QIAGFFGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAILLSVSHS 483
Q+A + SR+TV++A+++LDRY S N Q ++T+ +AAK +E RP + LI + VF + L ++E +L+ L W + P T +R F L E E + + +AE + S + F+ F P T+A+++IL++ S
Sbjct: 103 QVADAYHLSRETVSIAMSFLDRYLSKTTVNKKFFQLASMTAFFLAAKMQESRPVKMSNLINLSRGVFKVQDLKSMEKVMLRQLKWHINPPTPGSFVRLFLYYLEEE---------SEAILRSVLEVAEWSTELSTVEYYFIRFKPRTVAMASILIAFEKS 253
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: E0CPN3_VITVI (Cyclin N-terminal domain-containing protein n=4 Tax=Vitis TaxID=3603 RepID=E0CPN3_VITVI) HSP 1 Score: 62.8 bits (151), Expect = 6.710e-7 Identity = 48/156 (30.77%), Postives = 82/156 (52.56%), Query Frame = 1
Query: 7 QIAGFFGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAILLS 471
++A + + DT+ + ++Y+DR+ S A N Q + V+S+ IAAK+EE P + + T +T ++++ +E ILK L++E+ T+ +R F + E + K N QL L +A+ S D V+F+PS +A S I LS
Sbjct: 140 EVAEEYKLASDTLYLTISYIDRFLSSKALNRQRLQLLGVSSMLIAAKYEEISPPHVEDFCYITDNTYTKEEVVKMEADILKSLNFEMGNPTIKTFLRRFTRIAQENY-KTPNL--------QLEFLVYYLAELSLLDYGCVKFLPSMVAASVIFLS 286
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: UPI000A2A6074 (G2/mitotic-specific cyclin-A n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A6074) HSP 1 Score: 61.6 bits (148), Expect = 2.110e-6 Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = 1
Query: 40 TVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEIADFSAYDVS-FVEFVPSTMAISAILLSV 474
T+ + +NY+DR+ S+M+ Q V + +A+KFEE P + E + T +TAKQLL +E +LK L ++L T + + + K K E ++ LA + + S D F+E+VPST+A SA++LS+
Sbjct: 243 TLYLTVNYIDRFLSMMSVLRGKLQLVGTACMLLASKFEEIYPPEVSEFVYITDDTYTAKQLLKMEQLVLKALTFDLSVPTTLNFLERYL----------KATKAPENLAPKVESLARYLCEISLLDCDPFLEYVPSTIAASAVVLSL 379
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: UPI00098E406C (cyclin-A3-1-like isoform X1 n=2 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E406C) HSP 1 Score: 60.8 bits (146), Expect = 2.720e-6 Identity = 45/155 (29.03%), Postives = 80/155 (51.61%), Query Frame = 1
Query: 7 QIAGFFGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAILL 468
++A + + DT+ + ++Y+DRY S N Q + V+++ IA+K+EE P + + T +T ++++ +E ILK L++E+ T+ +R F + + N L LA IA+ S D V+F+PST+A SA+ L
Sbjct: 135 EVAEEYKLASDTLYLTISYIDRYLSSNVLNRQKLQLLGVSAMLIASKYEEITPPHVEDFCYITDNTYTKQEVVKMESDILKFLNFEMGNPTIKTFLRRFIKAGLDDSKYNDLN---------LEFLANYIAELSLVDYGCVQFLPSTVAASAVFL 280
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A2R5GFP5_9STRA (G1/S-specific cyclin-D2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFP5_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 4.380e-6 Identity = 44/156 (28.21%), Postives = 75/156 (48.08%), Query Frame = 1
Query: 22 FGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEIADFSAY---DVSFVEFVPSTMAISAILLSVS 477
+G S++T+AVA+NY+DRY S ++ ++ Q +A+ S+ +A K E P + EL + + +EL +L+V+ W+L PVT + +P E R+L EE F + F+ F PS + +A+L + S
Sbjct: 143 YGISQETIAVAVNYMDRYLSEISTKRSILQLLAMGSIFVATKLHETFPIGMHELRDLADGTYLESDIKLMELELLRVIQWKLTPVTPQSFMAHIIQFIPCP--------------ETRRVLHEEAVTFLDVVIPEYEFLHFTPSVIGTAAVLCAFS 284
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A7S4RBU3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBU3_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 5.070e-6 Identity = 43/156 (27.56%), Postives = 73/156 (46.79%), Query Frame = 1
Query: 7 QIAGFFGYSRDTVAVALNYLDRYTSLMACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTP-VFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILAEEI--ADFSAYDVSFVEFVPSTMAISAIL 465
+I ++ SR+ VA+A ++LDR+ C+ + A+T LH+A+K + + L K + F K + +E IL L W L P +V + C+ +P ++ + RI + A+ S D FV PS +AI+A+L
Sbjct: 79 RIVDYYSASREIVAIAFSFLDRFLDKCHCDRTAFKLAAMTCLHLASKITSSKQFSVSTLAKLSRGEFDEKHIADMENIILNTLGWHLHPPSVLSFLHHLCAAIPTTDERLRR-----------RIFHHAVFFAELSVLDYFFVPHKPSAIAIAAVL 223
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A7S1GM69_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GM69_CYCTE) HSP 1 Score: 59.7 bits (143), Expect = 5.560e-6 Identity = 53/161 (32.92%), Postives = 85/161 (52.80%), Query Frame = 1
Query: 7 QIAGFFGYSRDTVAVALNYLDRY--TSL---MACNPALAQAVAVTSLHIAAKFEEPR---PAPLRELIKFTPVFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLP-EAWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAI 462
Q+ F ++R+TVA+A+++LDRY TS+ N L Q A+TSL+ A K EP P + L + T +T +Q+ T+E SIL + W + P T + F ++LP EA + +N E L++ + + D SFV ST+A++A+
Sbjct: 97 QVVDFCHFNRETVAIAMSFLDRYLMTSIGRNALENRKLFQLAAMTSLYTAIKIHEPEAMEPKVVAGLSRGT--YTEEQVTTMEASILGAIQWRMNPPTALAFVHHFLALLPAEALTEEENMTVLE--------LSKCQTELAVKDYSFVGVKASTIALAAL 247 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig134.2538.1 >prot_F-serratus_M_contig134.2538.1 ID=prot_F-serratus_M_contig134.2538.1|Name=mRNA_F-serratus_M_contig134.2538.1|organism=Fucus serratus male|type=polypeptide|length=467bp MACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTPVFTAKQLLTIELback to top mRNA from alignment at F-serratus_M_contig134:633382..636437+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig134.2538.1 ID=mRNA_F-serratus_M_contig134.2538.1|Name=mRNA_F-serratus_M_contig134.2538.1|organism=Fucus serratus male|type=mRNA|length=3056bp|location=Sequence derived from alignment at F-serratus_M_contig134:633382..636437+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig134:633382..636437+ >mRNA_F-serratus_M_contig134.2538.1 ID=mRNA_F-serratus_M_contig134.2538.1|Name=mRNA_F-serratus_M_contig134.2538.1|organism=Fucus serratus male|type=CDS|length=2802bp|location=Sequence derived from alignment at F-serratus_M_contig134:633382..636437+ (Fucus serratus male)back to top |