mRNA_F-serratus_M_contig134.2530.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig134.2530.1 vs. uniprot
Match: D7G2H6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H6_ECTSI) HSP 1 Score: 139 bits (351), Expect = 6.120e-29 Identity = 295/1138 (25.92%), Postives = 408/1138 (35.85%), Query Frame = 3
Query: 930 SHFITAKVQDDLLAEKRSRGPTTVDPSLGCRTTGTSPCLPHPPACNIGSAAEDFVAKDDQREESIQMFGQGLWVAIRLDLLSWFKTLL---SSPASTDSHSSADQSTVNDTGGKFAWTATTGGREDHSGGRGRTSLRINQETVPRKLSSGPGS--RRVSLKSLVTGVEVSATVSGVGLATWRGAENCDGIVFNINRTRTSLCVGEQFASVTGGADDMTNVDRKSMNVSLESVRLFRLHLA------RDASLAFG-GGETLPHSPPT-GWRRKSRPRVFGRPSADSMNNTPSSPPAPGSVETQGRQDDNTDLIVSLDRSLSAASDEIAFLSARKLTFQRRDAVVDSDVASRSERSVPSPPISNNDREERSTGHTQVPAENLAKVTATASTSAAEGVLTCACSSSEKEQSPPTTMSLCDETRM---EGAGSGEAGEAVSGGYTVSPDDDTDARKGDKRAANVCGESTLLPCTYVGAARSSSVKIVQQWRAAVAKRVASQARLADTAGIDDKLRPEVTRPQAITMISTGAPAGVSGSNVINTLRWKRTAASVGERGSTSVKPCTICLETPPPLPPRPHPLQPVCEGARASSEIAAAVAPEVERNDPPTTRTLPSRGSADGCTEGMGATILILVDGLHLVWTLEIRDGLFLFVADARDSFS---------------------RTPSSDHECTSPPTAGGTDGSDGYHPHARCEPDSLTGNNRLASTEHLGNVG--RASESPRAPAHPAVE-----------------------------------DSEARDAEALQSTEGVAASGEIAVSKVMVSEDKHASVRS---------------------------------SQAPSS--------------------SPSAQEQSPPQSLSHTSPASSDISFMTSLRAARRVCSTLGYRGDGSSDQRSLLDWLRNRSDQAKSNLSDGT--NSSGVPLPGSLSKLSPLHPCGGTALSNAQPVKPVAKSSPRS-----GAVEPK---------KAVVNTGE----------------RKEPRGRGNR-VDYEVRFDSPQIKLVGEGSSLILYADRADAEARTYSTCLAVASTPGSPRASLFHKEYYSLLRRKEVKVQLKGARVFSAAENGGDRDRWVK 3863
S FITA ++ + G R +G + C P C G A + F A+ Q E +FGQG W+A+RLDL+ WF L ++ A+TD + A+ S+ G AT +T+ R P S P ++ +LV V V A+V G+ LATWRGA+N DG +I+ S T G+ ++ K + + L +VRL RL +A D+ G GGE+LP SPP+ G +R SR + R S TP P P T G+ S SVP+ P S + + +N A T CD + + S AGE S P D R+ K AA + G S VG RS++ ++ + +R +P + NV R+ R AS S S KP + TPP L PR PL P G SS AV PP P GAT L+++DGL LVWTLEIRD +FLF++DA +SF+ T S+ +P A + G R P S ++ A+ G V RAS+ P +P + S R ++ G G + S + S++K S RS S++P SP+A P S A S++SFM S A V S G R +G+ D SLL WL +Q + T N+ G S GG A S A + V+ SP S +V P+ K VV GE + G R +++EV +PQIKL+G+ +SLIL A+ AD EARTY T V+S+P SP AS F Y+S LRRK++KV+L+ ARVFS + DRWV+
Sbjct: 2113 SLFITANDDNETAGGLSGFAELDSAAAAGGRFSGPASCPSRPSGCQ-GEARDSFNAEPAQGEREEHVFGQGFWIALRLDLIQWFMPLPIAGTAAAATDDYE-AEMSSATPPGENSRHGATAXXXXXXXXSTPQTAQR------PTAGVSEPTEDPEEANILTLVESVSVRASVRGLALATWRGADNRDGFALDIDSIDAS----------TSGSIGDSSASGKHVELRLYAVRLSRLDVALDDPSHADSRRESGEGGESLPPSPPSFGGQRLSRLWIGRRLSYRDSRGTPRLPTTP----THGKG---------------------------------------------SMVSVPAAPGSGSPTD----------GDNAAAAT-------------------------------CDASAFGNDKAKNSHNAGENQSPAAADVPPDAEGLRQQPKLAAGLLGNS-------VGRIRSAARLVIPXXXXXXXXXXXXXXXXXXXXXXXXXXXEDASR----------SPRRGNIKNV----RFPRRRASCA---SPSAKPPSKSGPTPP-LSPR-TPLLPPRPGTATSSAPDGAVPDRKVAVAPP-----PRTSGEKDVVANPGATNLVVLDGLRLVWTLEIRDSVFLFISDAVESFTTPQCASHSGEEDDSAPFRDVNETASAKRRAPAPDNASADSAASGLSRSGRWRPSSFVSPSQGANGSGGGGVTARRASD----PGNPVLRLNAVLPATIPEGTGXXXXXXXXXXXXXIRMPKSATSSPVRTQALSEAACGSEDGGGRSNSAAVGSKEKQQSSRSPNGSGYSRDEEGGSEGEKESGEQGDGNDGGGENSRSPCRFRSTPPRIDTEGGRSPETIRSPAAFVARSPDRSREASSAGSELSFMASP-AMESVSSPRGGRREGNDDPNSLLHWLNENFNQPTRDQKQPTSPNNKGDIHSSSSXXXXXXXSTGGWAGSPAHRGRLVSSFSPSSLPRDISSVSPRQSGSPRRESKGVVIGGETTARXXXXXXXXXXXTQGSDGAPGKRHIEFEVHLKNPQIKLLGDNASLILCAEGADVEARTYGTWGVVSSSPASPGASAFRSGYFSSLRRKDIKVKLEKARVFSLPVSEEGLDRWVE 3106
BLAST of mRNA_F-serratus_M_contig134.2530.1 vs. uniprot
Match: W7TEW1_9STRA (Conserved uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEW1_9STRA) HSP 1 Score: 133 bits (334), Expect = 2.750e-27 Identity = 154/650 (23.69%), Postives = 250/650 (38.46%), Query Frame = 3
Query: 4269 SKLRLDVPELNANLDSRQFFEVLDVVKNLLLAPPPTELRSWVLERKRRRRVEG--CIDSKEVLGQEAIRRENKGKGH----------DVRNKHDREHLMEIVEKVLSSWACGGIATSVPPSAPPATTPPRAGGGVRPPLPAEPRELTRIEYRIGRCTWLMTLDQEVNGLQAQVEVGVTGLSSINNYLGHRGFGPSVVVQNVRMQIERLWARHV-PRPDEEKXXXXXXXQEWSDSSVAPLAHRNDKSSCSILSPRLCGTQPCQACGEHFTPEHNAWNSCRVHGTDEGEVGEFIVPVEY---ATSRSSCT----------------------------------RASPEAAATLNS-----------------------VGRWSCCGAESKSAPGCVPRPHVPKEIMITVRADGAPSVLVGTTKVSCFRHFEVNIFPAVLYELDLHLRRGLAASMMRYFKIEPTKD---SEDSLPRGPRLIASS---SRRKSRSDRQGA----------CPETPPRSRAGPAAALTGREMGGQHRSDGACIIFLGKRGSGAXXXXXXXXXXXXXXXXXXXSSVGVVPPSKESSDEDTAGDTLLGQDVVYLKYIRLGEIKLNVTASGLKIMRFRNLKVSTPPYVRHEKMSEWSRLSSKIAWHL 5951
+K+ LD+P+L+ NL+SRQF+ LDV++N+LLA P ER RR + E ++++ + A + KG D+ +K DR+ L +VE+ L + E ++Y +G TW + ++ + +E+G TG S + Y H G S V Q+E W R+V P PD + ++D ++ ++SP + QPCQ CG F E N SC HG +G GEF + E + R C +AS +A TL+S GRW+CC A ++APGC R HV KE+M++VRA + V +V ++ +V+IFP Y+L L R + + YF + ++D+ L S + K+ +++G P S A P A+ T H+S A ++ S+ S S GDT + V+Y++Y+R G++ + ++ +G + +F + S P +V+ K+ W RL K H+
Sbjct: 336 AKVLLDLPQLDWNLNSRQFYITLDVIRNVLLAAPVQTEEEEAEERIRREQQEAKRIAEARQRVAAVAGLNPGEEKGGLELALEPEHLDLGSKSDRDVLKTLVEQTLQRLLLPTL-----------------------------HETKMVQYCVGGGTWKVKAEEGMLTKYDALEIGFTGFSGQHVYF-HDGSMDSTV------QVESFWVRNVMPGPDS-------------------VLFKDDVTT--VMSPVVRDKQPCQRCGAPFEEESNRATSCVFHGCADGTPGEFRLLTEAEIESQHRRDCAVEEGGEGGGDAEGLDGSGWPVAGTAPARRERREAQASGFSAETLDSSGPPLSGLHRHASYQRLQVLRPTTGRWTCCRATYETAPGCRARAHVAKEVMLSVRAKSHAPLFVAGYEVHPYQFMDVSIFPGADYKLTFQLTRNIVELLHAYFLTQDVTGPVLADDAAQTTDLLFGRSVLEQKHKAGKEKKGTYLTDRFAKNFMGGEKPSSSASPRAS-TXXXXXXPHKSSSASLV----------------------------SNTNTTVASTASGGSVVKGDTPK-EPVIYMRYLRWGDLNVKLSVNGFAL-KFDGYRASIPAFVQQGKILSWKRLIRKFEKHV 897
BLAST of mRNA_F-serratus_M_contig134.2530.1 vs. uniprot
Match: A0A4D9DCT4_9STRA (Fmp27_GFWDK domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCT4_9STRA) HSP 1 Score: 133 bits (335), Expect = 4.640e-27 Identity = 154/650 (23.69%), Postives = 250/650 (38.46%), Query Frame = 3
Query: 4269 SKLRLDVPELNANLDSRQFFEVLDVVKNLLLAPPPTELRSWVLERKRRRRVEG--CIDSKEVLGQEAIRRENKGKGH----------DVRNKHDREHLMEIVEKVLSSWACGGIATSVPPSAPPATTPPRAGGGVRPPLPAEPRELTRIEYRIGRCTWLMTLDQEVNGLQAQVEVGVTGLSSINNYLGHRGFGPSVVVQNVRMQIERLWARHV-PRPDEEKXXXXXXXQEWSDSSVAPLAHRNDKSSCSILSPRLCGTQPCQACGEHFTPEHNAWNSCRVHGTDEGEVGEFIVPVEY---ATSRSSCT----------------------------------RASPEAAATLNS-----------------------VGRWSCCGAESKSAPGCVPRPHVPKEIMITVRADGAPSVLVGTTKVSCFRHFEVNIFPAVLYELDLHLRRGLAASMMRYFKIEPTKD---SEDSLPRGPRLIASS---SRRKSRSDRQGA----------CPETPPRSRAGPAAALTGREMGGQHRSDGACIIFLGKRGSGAXXXXXXXXXXXXXXXXXXXSSVGVVPPSKESSDEDTAGDTLLGQDVVYLKYIRLGEIKLNVTASGLKIMRFRNLKVSTPPYVRHEKMSEWSRLSSKIAWHL 5951
+K+ LD+P+L+ NL+SRQF+ LDV++N+LLA P ER RR + E ++++ + A + KG D+ +K DR+ L +VE+ L + E ++Y +G TW + ++ + +E+G TG S + Y H G S V Q+E W R+V P PD + ++D ++ ++SP + QPCQ CG F E N SC HG +G GEF + E + R C +AS +A TL+S GRW+CC A ++APGC R HV KE+M++VRA + V +V ++ +V+IFP Y+L L R + + YF + ++D+ L S + K+ +++G P S A P A+ T H+S A ++ S+ S S GDT + V+Y++Y+R G++ + ++ +G + +F + S P +V+ K+ W RL K H+
Sbjct: 3172 AKVLLDLPQLDWNLNSRQFYITLDVIRNVLLAAPVQTEEEEAEERIRREQQEAKRIAEARQRVAAAAGVNPGEEKGGLELALEPEHLDLGSKSDRDVLKTLVEQTLQRLLLPTL-----------------------------HETKMVQYCVGGGTWKVKAEEGMLTKYDALEIGFTGFSGQHVYF-HDGSMDSTV------QVESFWVRNVMPGPDS-------------------VTFKDDVTT--VMSPVVRDKQPCQRCGAPFEEESNRATSCVFHGCADGTPGEFRLLTEAEIESQHRRDCAVEEGGEGKGDAEGLDRSGWPVAGTAPARRERREAQASGFSAETLDSSGPPLSGLHRHASYQRLQVLRPTTGRWTCCRATYETAPGCRARAHVAKEVMLSVRAKSHAPLFVAGYEVHPYQFMDVSIFPGADYKLTFQLTRNIVELLHAYFLTQDVTGPVLADDAAQTTDLLFGRSVLEQKHKAGKEKKGTYLTDRFAKNFMGGEKPSSSASPRAS-TXXXXXXPHKSSSASLV----------------------------SNTNTTVASTASGGSVVKGDTPK-EPVIYMRYLRWGDLNVKLSVNGFAL-KFDGYRASIPAFVQQGKILSWKRLIRKFEKHV 3733 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig134.2530.1 >prot_F-serratus_M_contig134.2530.1 ID=prot_F-serratus_M_contig134.2530.1|Name=mRNA_F-serratus_M_contig134.2530.1|organism=Fucus serratus male|type=polypeptide|length=1957bp MGTCGEAHGVKEVNRFAEEEAFKLSYTDGSVASNRRGADGVQSTDNDALKback to top mRNA from alignment at F-serratus_M_contig134:490466..522622- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig134.2530.1 ID=mRNA_F-serratus_M_contig134.2530.1|Name=mRNA_F-serratus_M_contig134.2530.1|organism=Fucus serratus male|type=mRNA|length=32157bp|location=Sequence derived from alignment at F-serratus_M_contig134:490466..522622- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig134:490466..522622- >mRNA_F-serratus_M_contig134.2530.1 ID=mRNA_F-serratus_M_contig134.2530.1|Name=mRNA_F-serratus_M_contig134.2530.1|organism=Fucus serratus male|type=CDS|length=11742bp|location=Sequence derived from alignment at F-serratus_M_contig134:490466..522622- (Fucus serratus male)back to top |