mRNA_F-serratus_M_contig134.2522.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig134.2522.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE) HSP 1 Score: 189 bits (480), Expect = 5.320e-47 Identity = 177/542 (32.66%), Postives = 220/542 (40.59%), Query Frame = 3
Query: 117 MDQDGLFLMIKMCNNCSFNKGNWKKCLSRRHNPRMSSIRYEELTLGHRLCVKPDQSITIYKLRDNETNEEFLEFDESIAFQTACKECVSIKTCIDAEHELVDWWPPKIVGDQAEGTPLDPDPPTDEETVSSTMPASIGTSNSVSRSINNSNTKKKRPKKANXSPAQANAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSGGGRGKGKVKAAAGQQKQSTQKPSSKRKSPSARGSPPASSKRISMARSAGSRQSSVGMRRPKGRRSGRGGVSSSPLEGEISSDAIGGDGDGDDDNVDRGPKMEIDTSVDTSIGSSDVDAESHERGRRPPKRRAKDKAPA---LVTLSPKTDNRESFDTSVNPAAGNDRINGGTAASTASCVDPSVVMSKSCEEVAA----VXXXXXXXXXXPKTVAERLEAVKAEEAELLRQFQQVHKRCAKEEASKSAEIEEFVRAGEEALRIMREEKEEALRRISRAGKQKGEERRKLTQQRLKEFEAAEEAARAEARERDARLEAERERLTRN 1721
MDQDGLFLM+KMCN CS NKG+WKKC+SRRHNPRMS++R +ELT HR CVKPDQ+ITIYKL D+ETNE++LEFDE I FQTAC+ C++IK+C+ GKV +A G+GG S+ PL+G RG + + I +++ +S E RP KRR K PA VTLSPK R+SF + +PAA P TVAERLE VK EEAELLR+F++ HKR A+EE +K E+ F RAGE ALR M++EKEEAL+RIS K K ER++L QR KEFEA E R EARERDARLEAE+E+L ++
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRL------------------------------------------------------------------------------------------------------------------------------GKVFSAT----------------------------------------------------FGKGGKSAGPLKGG------------------RGRRRSAPEKL-GDIHEMEIETDSSEVCERPHKRRGKAGTPANPAAVTLSPKAMRRDSF--AASPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSDGDAGLGVTSPPPVPTTVAERLELVKGEEAELLREFEETHKRIAQEEEAKRQEMARFQRAGEAALRAMQKEKEEALQRISAERKCKAAERKELLHQRFKEFEAEETELRIEARERDARLEAEKEQLAKD 343
BLAST of mRNA_F-serratus_M_contig134.2522.1 vs. uniprot
Match: D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI) HSP 1 Score: 171 bits (432), Expect = 4.420e-44 Identity = 74/105 (70.48%), Postives = 91/105 (86.67%), Query Frame = 3
Query: 117 MDQDGLFLMIKMCNNCSFNKGNWKKCLSRRHNPRMSSIRYEELTLGHRLCVKPDQSITIYKLRDNETNEEFLEFDESIAFQTACKECVSIKTCIDAEHELVDWWP 431
MDQDGLFLM+KMCN CS NKG+WKKC+SRRHNPRMS++R +ELT HR CVKPDQ+ITIYKL D+ETNE++LEFDE I FQTAC+ C++IK+C+ H+L+DW P
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRP 105
BLAST of mRNA_F-serratus_M_contig134.2522.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI) HSP 1 Score: 114 bits (284), Expect = 5.480e-22 Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 3
Query: 117 MDQDGLFLMIKMCNNCSFNKGNWKKCLSRRHNPRMSSIRYEELTLGHRLCVKPDQSITIYKLRDNETNEEFLEFDESIAFQTACKECVSIKTCIDAEHELVDWWP 431
MD DG L++ CNNC NK + C+ R+HN R+++++ +EL HR CVKPDQ++TI+KL D T EE +E+ + FQ C C+ +KTCI HEL DW P
Sbjct: 1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTP 105 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig134.2522.1 >prot_F-serratus_M_contig134.2522.1 ID=prot_F-serratus_M_contig134.2522.1|Name=mRNA_F-serratus_M_contig134.2522.1|organism=Fucus serratus male|type=polypeptide|length=721bp MDQDGLFLMIKMCNNCSFNKGNWKKCLSRRHNPRMSSIRYEELTLGHRLCback to top mRNA from alignment at F-serratus_M_contig134:193365..209387- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig134.2522.1 ID=mRNA_F-serratus_M_contig134.2522.1|Name=mRNA_F-serratus_M_contig134.2522.1|organism=Fucus serratus male|type=mRNA|length=16023bp|location=Sequence derived from alignment at F-serratus_M_contig134:193365..209387- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig134:193365..209387- >mRNA_F-serratus_M_contig134.2522.1 ID=mRNA_F-serratus_M_contig134.2522.1|Name=mRNA_F-serratus_M_contig134.2522.1|organism=Fucus serratus male|type=CDS|length=4326bp|location=Sequence derived from alignment at F-serratus_M_contig134:193365..209387- (Fucus serratus male)back to top |