mRNA_F-serratus_M_contig134.2520.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: D8LKQ4_ECTSI (Poly(Rc) binding protien (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ4_ECTSI) HSP 1 Score: 199 bits (506), Expect = 6.330e-54 Identity = 103/149 (69.13%), Postives = 122/149 (81.88%), Query Frame = 3
Query: 48 VEAGSRILIANSRIGAVIGRGGAIIKHIREVSGAKITISESCRGDHCDTEDRMVTMAGTFNAVQLAITHILSHAGAAGPNANPVMGPCGGD--CLANAVRILIPNVKAGGLIGRSGFNIKTIRERSGACITLSTRAFVLYTAHGPLQSP 488
+E SR+LI N +IGAVIG+GGAIIKHIREVSGAK+TIS+SC G H D++DRMVT AGTFN+VQLA THILSHAGA GP+A+PVMG GGD C+AN+ R+LIPNVKAGGLIGR G IK IRE+SGA I +S+ AF + HGPL +P
Sbjct: 99 METVSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHGDSDDRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAP 247
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE) HSP 1 Score: 202 bits (513), Expect = 5.530e-51 Identity = 223/663 (33.63%), Postives = 274/663 (41.33%), Query Frame = 3
Query: 204 MVTMAGTFNAVQLAITHILSHAGAAGPNANPVMGPCGGD--CLANAVRILIPNVKAGGLIGRSGFNIKTIRERSGACITLSTRAFVLYTAHGPLQSPQAAAPNANPIRGPDGRISA------GASPRFDAEDENDSPDPEGAPERACRRDGLSSDAAD-------GTAKSTPIVPDRILKAEGTFDACLRAHHLVVWKLMDVRPSSAQAPLSE-------------PDERVP-----VPTAT--------------TFAGAR---------VGSGV--------------RDQRISSPSSTNMFS----DESFR-GGGRNRGRVAASAKTAV-----KFSKESPSPAPFASEHL-------LPFRRSWGFGGPALVPMTPS----------------LSPAVITPESAGRKGSETNTPPQASSPPSPLAESPRGSTNGSVENFG----------------DSTNDARAMFVRDPTFSPVIEPNGVELAGAGAGGGEVVPALDVGGAASAADHALEYSGGVAIGVNGDDGELPPCLAGVFGSFVRG------------------CSIIGR------------ASPPARSPSTMTGIDVEVQRSAFSLLDMHDLDDIKNLSGAGIFAPDSPESFSNLSDEALADAFVTPGTARRG-PPAEGLDLA 1742
MVT AGTFN+VQLA THILSHAGA GP+A+PVMG GGD C+AN+ R+LIPNVKAGGLIGR G IK IRE+SGA I +S+ AF + HGPL +P P P G G P D A+ G P++ DR++ A G+FDACLRAHHLV KLMDVRPS P P R +PT FAGA VG GV ++S P +F+ DE+ R G GR R A + K + S SPA SEH + RSW + +++ ES+G + S T+TP SS S +SPRGS GSVE+FG D R L GG GGV+ DDGELP CL G+ SF+ G +G A+PP RSPST+TGI++EV RSAF+ L LDDIK+LSGAGI AP+SPE + +LSDEALA +A RG P +G+ LA
Sbjct: 1 MVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPPHHTPT--PQAGXXXXXXXXXXXIHGGLPHGDGGPXXXXXXXXXXXXXXXXXXXXXXXPAEREGGPPAGIPLPLPMLMDRVMTAMGSFDACLRAHHLVASKLMDVRPSPVPIPSGPXXXXSHGGPPSHGPSARAQSAPMMIPTXXXXXXXXXXXXXXXXVFAGAAARGNRHGHGVGGGVPHGPRAGGGDGAHPHHSQLSHPHPHRVFAANLHDEAPRMGAGRGGPRTATAXXXXXXXXXXKLATASTSPASSMSEHSYHRQPWDVEDHRSWSAAXXXXXXXXXXXXXXXXXXXXXXXXXVMCGELLSRESSGGRVSGTSTP-LLSSSVSVSKDSPRGSA-GSVEDFGTPATIGAADMNGGGGMDRQLLTRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVLHRGGMLGNMSGNXXXXGGVS-----DDGELPSCLVGILDSFLGGGGKSYVSDGNGIRSGSGNXGSVGNSNANEKNGNNNGAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYCHLSDEALAAMGAVYSSAARGNAPCDGVGLA 654
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: A0A836CIH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH4_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.460e-21 Identity = 92/265 (34.72%), Postives = 122/265 (46.04%), Query Frame = 3
Query: 39 NPCVEAGSRILIANSRIGAVIGRGGAIIKHIREVSGAKITISES------CRGDHCDTEDRMVTMAGTFNAVQLAITHILSHAGAAGPNANPVMGPC--------GGDCLA----------NAVRILIPNVKAGGLIGRSGFNIKTIRERSGACITLSTRAFVLYTAHGPLQSPQAAAPNANPIRGPDGRISAGASPRFDAEDENDSPDPEGAPERACRRDGLSSDAADGTAKSTPIVPDRILKAEGTFDACLRAHHLVVWKLMD 761
N EA SR+LI N++IGAVIG+GGAI+KHIRE SGA++TIS++ G +R+V + G+F AV A+ IL+HA N P+ G G+ A +A R+LIPN KAG LIGR G IK IR+ SGA I +S+ G L +P A A P P P A + + DR++ G F AC+RAHHL+V +MD
Sbjct: 101 NASSEAVSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLVHLVGSFGAVVAALGAILAHAETPS-NGEPLPGLAQLVAGGLLSGEAAAAVDAAITVPPSAFRMLIPNAKAGALIGRGGTTIKAIRDASGARIEISSHLA------GNLPAPPGGAGAAGP------------------------PTP--------------------AAIAVALSADRVVSVSGPFAACVRAHHLIVASMMD 314
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: D8LKQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ3_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 2.860e-17 Identity = 91/295 (30.85%), Postives = 118/295 (40.00%), Query Frame = 3
Query: 1425 DDGELPPCLAGVFGSFVRG----------------------------CSIIGRASPPARSPSTMTGIDVEVQRSAFSLLDMHDLDDIKNLSGAGIFAPDSPESFSNLSDEALADAFVTPGTARRG-PPAEGLDLA-----------------------------------------------DPKPAANKTTDIGADNSNSTSSLTGSVEGVGEEAHELYDMSCTSLNHGYPFGGTVPELEENTVGLFRRSPAFGNKGVVSEGGRTQKSPLMKMVRITGTVEEVQLAEYLIRVRT 2081
DDGELP CL G+ SF+ G A+PP RSPST+TGI++EV RSAF+ L LDDIK+LSGAGI AP+SPE + +LSDEA A +A RG P +G+ LA P + + S+ ++ G++ V L + T+ + G P L + VG A G +K V+ITGT EEVQLAEYLIRV T
Sbjct: 123 DDGELPSCLVGILDSFLGGGGKSYVSDGNSIRSGSGGXXXXXXXXXXXXXXXXAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYYHLSDEAAAAMGAVYSSAARGNAPCDGVGLAAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSSPFEGFRLREGVRGNMSDGAATTPGAIAAVTGGVSRL--VLDTTNSXXXXXNGVSPSLA-SAVGHVSGGLAXXXXXXXXTAGPNS----LKTVKITGTAEEVQLAEYLIRVST 410
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: A0A835Z8V5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V5_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.880e-14 Identity = 64/157 (40.76%), Postives = 89/157 (56.69%), Query Frame = 3
Query: 51 EAGSRILIANSRIGAVIGRGGAIIKHIREVSGAKITISES------CRGDHCDTEDRMVTMAGTFNAVQLAITHILSHAGAAGPNANPV--------MGPCGGDCLANAV------------RILIPNVKAGGLIGRSGFNIKTIRERSGACITLST 443
EA SR+LI N++IGAVIG+GGAI+KHIRE SGA++TIS++ G +R++ + G+F AV A IL+HA N +P+ G G+ + A R+LI + KAG LIGR+G IK IR+ SGA I +S+
Sbjct: 293 EAMSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHAETPS-NGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISS 448
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: A0A8J2T296_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T296_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.540e-10 Identity = 48/130 (36.92%), Postives = 76/130 (58.46%), Query Frame = 3
Query: 63 RILIANSRIGAVIGRGGAIIKHIREVSGAKITISES-----CRGDHCDTEDRMVTMAGTFNAVQLAITHILSHAGAAGPNANPVMG--PCGGDCLANAVRILIPNVKAGGLIGRSGFNIKTIRERSGACI 431
++L+ ++ G VIG+GGA++ HIR+ SG ++ + ES G +R++T++G F +V A +L H AA P A+P++ P G AV +L+P K GGLIGR G +I +R+ SGA +
Sbjct: 102 KLLLPHAACGIVIGKGGAMVSHIRDASGCQVDVQESPAPPPMAGGVQGGSERIITLSGDFGSVYAAFQMVLQHLAAAQP-ADPLLTTRPPGS---VEAV-VLVPRNKTGGLIGRGGASINRVRQDSGATV 226
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: A0A7S3JWP9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWP9_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 2.610e-10 Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 3
Query: 60 SRILIANSRIGAVIGRGGAIIKHIREVSGAKITISESCRGDHCDT---EDRMVTMAGTFNAVQLAITHILSHAGAAG----PNANPVMGPCGGDCLANAVRILIPNVKAGGLIGRSGFNIKTIRERSGACI 431
+++LI N+++G VIG+GGA+I HIRE S A + I+E + ++ + ++R++T G F AV A + H A PN + V+ P IL+P K GGLIGRSG +I +R SGA +
Sbjct: 158 AKLLIPNTKVGIVIGKGGAMINHIRESSKASLDIAEPGQQNNNQSALPQERVLTFNGDFAAVYTAFQMVQQHLSVASQQQDPNNSTVVPPS-----LIETTILVPRNKTGGLIGRSGASINRVRNDSGATV 283
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: A0A6A6G2G1_9PEZI (Uncharacterized protein n=2 Tax=Elsinoe TaxID=40996 RepID=A0A6A6G2G1_9PEZI) HSP 1 Score: 70.5 bits (171), Expect = 6.260e-9 Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = 3
Query: 63 RILIANSRIGAVIGRGGAIIKHIREVSGAKITISESCRGDHCDTEDRMVTMAGTFNAVQLAITHILSHAGAAGPNANPVMGPCGGDCLANAVRILIPNVKAGGLIGRSGFNIKTIRERSGACITLSTRAFVLYT 464
R +I++S VIG+GG + IR++SGAK T+SE RG +R++T++G +AV A I+ N P+ P + +R+LIP++ G +IG+ G I+ I+E SGA + S + L T
Sbjct: 133 RSIISSSEAATVIGKGGENVSLIRKLSGAKCTVSEYSRG----AVERILTVSGLVDAVAKAFGLIIRTL-----NNEPMESPSTPESKTYPLRLLIPHILIGSIIGKGGVRIREIQEASGARLNASDQCLPLST 257
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: A0A6J3MA54_9PEZI (uncharacterized protein n=1 Tax=Dissoconium aciculare CBS 342.82 TaxID=1314786 RepID=A0A6J3MA54_9PEZI) HSP 1 Score: 69.7 bits (169), Expect = 1.160e-8 Identity = 45/134 (33.58%), Postives = 73/134 (54.48%), Query Frame = 3
Query: 63 RILIANSRIGAVIGRGGAIIKHIREVSGAKITISESCRGDHCDTEDRMVTMAGTFNAVQLAITHILSHAGAAGPNANPVMGPCGGDCLANAVRILIPNVKAGGLIGRSGFNIKTIRERSGACITLSTRAFVLYT 464
R +I+++ VIG+GG + IR ++GAK+T+SE RG +R++T++G +AV A I+ N P+ P +R+LIP++ G +IG+SG I+ I+E+SGA + S L T
Sbjct: 143 RAIISSAEAATVIGKGGENVSQIRALAGAKLTVSEYSRG----AVERILTVSGPVDAVAKAFGLIIRTL-----NQEPLDTPSTEKSKTYPLRLLIPHILIGSIIGKSGVRIREIQEQSGARLNASESTLPLST 267
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: E4UPQ3_ARTGP (Poly(RC)-binding protein 3 n=16 Tax=Arthrodermataceae TaxID=34384 RepID=E4UPQ3_ARTGP) HSP 1 Score: 68.9 bits (167), Expect = 1.920e-8 Identity = 45/134 (33.58%), Postives = 71/134 (52.99%), Query Frame = 3
Query: 63 RILIANSRIGAVIGRGGAIIKHIREVSGAKITISESCRGDHCDTEDRMVTMAGTFNAVQLAITHILSHAGAAGPNANPVMGPCGGDCLANAVRILIPNVKAGGLIGRSGFNIKTIRERSGACITLSTRAFVLYT 464
R +I+++ VIG+GG + IR +SGAK T+S+ RG +R++T++G +AV A I+ N P+ P +R+LIP++ G +IG+SG I+ I+E SGA + S L T
Sbjct: 134 RAVISSAEAATVIGKGGENVSQIRRLSGAKCTVSDYSRG----AVERILTVSGMQDAVAKAFGLIIRTL-----NNEPLEAPSTAQSKTYPLRLLIPHILIGSIIGKSGVRIREIQEASGARLNASDSCLPLST 258 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig134.2520.1 >prot_F-serratus_M_contig134.2520.1 ID=prot_F-serratus_M_contig134.2520.1|Name=mRNA_F-serratus_M_contig134.2520.1|organism=Fucus serratus male|type=polypeptide|length=643bp MVTMAGTFNAVQLAITHILSHAGAAGPNANPVMGPCGGDCLANAVRILIPback to top mRNA from alignment at F-serratus_M_contig134:125215..133781+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig134.2520.1 ID=mRNA_F-serratus_M_contig134.2520.1|Name=mRNA_F-serratus_M_contig134.2520.1|organism=Fucus serratus male|type=mRNA|length=8567bp|location=Sequence derived from alignment at F-serratus_M_contig134:125215..133781+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig134:125215..133781+ >mRNA_F-serratus_M_contig134.2520.1 ID=mRNA_F-serratus_M_contig134.2520.1|Name=mRNA_F-serratus_M_contig134.2520.1|organism=Fucus serratus male|type=CDS|length=3858bp|location=Sequence derived from alignment at F-serratus_M_contig134:125215..133781+ (Fucus serratus male)back to top |