mRNA_F-serratus_M_contig1338.2513.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1338.2513.1
Unique NamemRNA_F-serratus_M_contig1338.2513.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1338.2513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1338contigF-serratus_M_contig1338:243632..244224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size593
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1338.2513.1prot_F-serratus_M_contig1338.2513.1Fucus serratus malepolypeptideF-serratus_M_contig1338 243887..244189 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929312.6346965-UTR-F-serratus_M_contig1338:243631..2438861622929312.6346965-UTR-F-serratus_M_contig1338:243631..243886Fucus serratus maleUTRF-serratus_M_contig1338 243632..243886 +
1690962794.0292668-UTR-F-serratus_M_contig1338:243631..2438861690962794.0292668-UTR-F-serratus_M_contig1338:243631..243886Fucus serratus maleUTRF-serratus_M_contig1338 243632..243886 +
1622929312.6567388-UTR-F-serratus_M_contig1338:244189..2442241622929312.6567388-UTR-F-serratus_M_contig1338:244189..244224Fucus serratus maleUTRF-serratus_M_contig1338 244190..244224 +
1690962794.054541-UTR-F-serratus_M_contig1338:244189..2442241690962794.054541-UTR-F-serratus_M_contig1338:244189..244224Fucus serratus maleUTRF-serratus_M_contig1338 244190..244224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929312.645441-CDS-F-serratus_M_contig1338:243886..2441891622929312.645441-CDS-F-serratus_M_contig1338:243886..244189Fucus serratus maleCDSF-serratus_M_contig1338 243887..244189 +
1690962794.0433474-CDS-F-serratus_M_contig1338:243886..2441891690962794.0433474-CDS-F-serratus_M_contig1338:243886..244189Fucus serratus maleCDSF-serratus_M_contig1338 243887..244189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1338.2513.1

>prot_F-serratus_M_contig1338.2513.1 ID=prot_F-serratus_M_contig1338.2513.1|Name=mRNA_F-serratus_M_contig1338.2513.1|organism=Fucus serratus male|type=polypeptide|length=101bp
MIKSRLLIPKRRDQILLLKMTQASFSSRDQKCIFSMAKFPHRNTFSDGVR
RDFFETMSLPTAYERRASKFVFDDPILWRLQLLQACDSARNNIFRRNNQH
*
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mRNA from alignment at F-serratus_M_contig1338:243632..244224+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1338.2513.1 ID=mRNA_F-serratus_M_contig1338.2513.1|Name=mRNA_F-serratus_M_contig1338.2513.1|organism=Fucus serratus male|type=mRNA|length=593bp|location=Sequence derived from alignment at F-serratus_M_contig1338:243632..244224+ (Fucus serratus male)
CACTCAACCACTACACTGCATCACTGTCCTGGTGACTCAAAATCTCACAT
GTTAAATGAGTTGTCTCCGAGAACCTCTCCTCGCCATGCACTGCAGTATC
TACAATGGCCGCAACTAACACCCGTTAGAAGCGCTAAACCACTAGACTAC
TCAGTCATGACTTCGGGATGATCTCTCAAGAAATATTTGATCAGCTCTTC
CTTATAAGTCCTACCAGTTATCTTTCAACTCTGAATTTCAGTCATCTTGC
GTACCATGATTAAATCAAGGCTTCTTATTCCGAAACGTCGGGATCAGATA
TTGCTCCTAAAAATGACGCAAGCAAGCTTTTCATCACGAGATCAAAAGTG
CATTTTCTCCATGGCGAAATTCCCCCATCGCAACACATTCAGTGACGGGG
TACGCCGCGACTTTTTCGAAACAATGAGCTTACCTACTGCATACGAACGA
CGTGCGAGCAAATTTGTTTTTGATGATCCGATCCTTTGGCGACTACAACT
GCTGCAAGCATGCGACAGTGCAAGAAATAATATATTTCGGAGGAACAATC
AACACTAAAACAATACGCGGAGTTGTTCGTATAGCTTGCGAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1338:243632..244224+

>mRNA_F-serratus_M_contig1338.2513.1 ID=mRNA_F-serratus_M_contig1338.2513.1|Name=mRNA_F-serratus_M_contig1338.2513.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig1338:243632..244224+ (Fucus serratus male)
ATGATTAAATCAAGGCTTCTTATTCCGAAACGTCGGGATCAGATATTGCT
CCTAAAAATGACGCAAGCAAGCTTTTCATCACGAGATCAAAAGTGCATTT
TCTCCATGGCGAAATTCCCCCATCGCAACACATTCAGTGACGGGGTACGC
CGCGACTTTTTCGAAACAATGAGCTTACCTACTGCATACGAACGACGTGC
GAGCAAATTTGTTTTTGATGATCCGATCCTTTGGCGACTACAACTGCTGC
AAGCATGCGACAGTGCAAGAAATAATATATTTCGGAGGAACAATCAACAC
TAAATGATTAAATCAAGGCTTCTTATTCCGAAACGTCGGGATCAGATATT
GCTCCTAAAAATGACGCAAGCAAGCTTTTCATCACGAGATCAAAAGTGCA
TTTTCTCCATGGCGAAATTCCCCCATCGCAACACATTCAGTGACGGGGTA
CGCCGCGACTTTTTCGAAACAATGAGCTTACCTACTGCATACGAACGACG
TGCGAGCAAATTTGTTTTTGATGATCCGATCCTTTGGCGACTACAACTGC
TGCAAGCATGCGACAGTGCAAGAAATAATATATTTCGGAGGAACAATCAA
CACTAA
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