mRNA_F-serratus_M_contig1338.2510.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1338.2510.1
Unique NamemRNA_F-serratus_M_contig1338.2510.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1338.2510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1338contigF-serratus_M_contig1338:99762..100266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size158
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929312.531525-CDS-F-serratus_M_contig1338:99762..998391622929312.531525-CDS-F-serratus_M_contig1338:99762..99839Fucus serratus maleCDSF-serratus_M_contig1338 99763..99839 -
1690962794.003635-CDS-F-serratus_M_contig1338:99762..998391690962794.003635-CDS-F-serratus_M_contig1338:99762..99839Fucus serratus maleCDSF-serratus_M_contig1338 99763..99839 -
1622929312.545747-CDS-F-serratus_M_contig1338:100187..1002661622929312.545747-CDS-F-serratus_M_contig1338:100187..100266Fucus serratus maleCDSF-serratus_M_contig1338 100188..100266 -
1690962794.0125415-CDS-F-serratus_M_contig1338:100187..1002661690962794.0125415-CDS-F-serratus_M_contig1338:100187..100266Fucus serratus maleCDSF-serratus_M_contig1338 100188..100266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1338.2510.1prot_F-serratus_M_contig1338.2510.1Fucus serratus malepolypeptideF-serratus_M_contig1338 99763..100266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1338.2510.1

>prot_F-serratus_M_contig1338.2510.1 ID=prot_F-serratus_M_contig1338.2510.1|Name=mRNA_F-serratus_M_contig1338.2510.1|organism=Fucus serratus male|type=polypeptide|length=52bp
YGRVGEGRRNCVRPAAEEERSGRGGQDHVPDWQPRKLLGMVEARSVNVKK
TT
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mRNA from alignment at F-serratus_M_contig1338:99762..100266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1338.2510.1 ID=mRNA_F-serratus_M_contig1338.2510.1|Name=mRNA_F-serratus_M_contig1338.2510.1|organism=Fucus serratus male|type=mRNA|length=505bp|location=Sequence derived from alignment at F-serratus_M_contig1338:99762..100266- (Fucus serratus male)
TATGGCCGCGTGGGTGAGGGAAGAAGAAATTGCGTCCGACCAGCGGCAGA
AGAAGAGAGAAGCGGAAGAGGCGGACAAGGTTGAGGTTGCACCTGGGGTG
ACTGTAGCAAGCTTGAGACGTTTTCGAACCGCGTTGGTTGGACCAACCCA
AGGACTCCCTAAGCGACGTCGATTGTGCCGTTAGTGAAAACTGAAACCCC
AAGAGTACGGAATGCGGTAGATGCTACGCGTTTGGGTGCATGGTTGCGAT
CCGGGAGGGTATAGGATGACTCACGGCTGACTCTTTGCCAAACTCTCTCT
CTCGAATGTCCCTCTTCATCTTTTTTTTTTTTCTGGCATGTGTATTTTGT
TATCCTTGTTCCTTTCTCTTTGTCGTTTTTGTGTGTGTGTTTGATAGATG
TTCCTCTGACCTCTTTCTGTCCAGCAGACCACGTACCGGATTGGCAACCA
CGTAAATTACTGGGTATGGTTGAGGCCCGATCGGTTAATGTGAAGAAAAC
AACAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1338:99762..100266-

>mRNA_F-serratus_M_contig1338.2510.1 ID=mRNA_F-serratus_M_contig1338.2510.1|Name=mRNA_F-serratus_M_contig1338.2510.1|organism=Fucus serratus male|type=CDS|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig1338:99762..100266- (Fucus serratus male)
TATGGCCGCGTGGGTGAGGGAAGAAGAAATTGCGTCCGACCAGCGGCAGA
AGAAGAGAGAAGCGGAAGAGGCGGACAAGTATGGCCGCGTGGGTGAGGGA
AGAAGAAATTGCGTCCGACCAGCGGCAGAAGAAGAGAGAAGCGGAAGAGG
CGGACAAGACCACGTACCGGATTGGCAACCACGTAAATTACTGGGTATGG
TTGAGGCCCGATCGGTTAATGTGAAGAAAACAACAACCACGTACCGGATT
GGCAACCACGTAAATTACTGGGTATGGTTGAGGCCCGATCGGTTAATGTG
AAGAAAACAACA
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