mRNA_F-serratus_M_contig1337.2504.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1337.2504.1 vs. uniprot
Match: D7FPU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPU0_ECTSI) HSP 1 Score: 330 bits (845), Expect = 2.590e-107 Identity = 185/310 (59.68%), Postives = 208/310 (67.10%), Query Frame = 2
Query: 101 IKLEFDGTILDLSQSWQHGEELAPIFSGACWAGTVVWQAALDLCDFMSEHFREDLAGATVVELGCGIGVPGMIARLLGATVILTEQDELLSLLDRNIASNFFQDLGSAGDGGTDAAGSIRRAALDWERTADADGIIASLNPSPDEKRTPESNSAGAGLEDGSNGGGSDRARRDGKVADYANTFASDGREMLEAQLGRKKRPDFILCADCVFEPLYGDSWKALAKVMGRLSDTGTTVLCSVERRGEDGVPQFFSACVAEGFKLQLVFLAAPDAPSPVEIYEFSRKGARDGFRCKAVG----GGSVDLGDGK 1018
+ L FDG LDL+QSW++GEE+APIFSGACWAGTVVW AALDLCD+MSEH R+ + GATVVELGCGIGVPGM+ARLLGATV+LTEQDELLSLLDRN+ NF G G IRR ALDWER AD DG++ASL E + G +G G G RR R R DF+LCADCVFEPLYGDSWKALAKVMGRLSD GTTVLCSVERRG DGVP+F AC AEGF LQ V+ AAP AP+PVE+YEFS KG FR +AV G ++ GDGK
Sbjct: 6 LLLSFDGVTLDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCDYMSEHLRQAMVGATVVELGCGIGVPGMVARLLGATVVLTEQDELLSLLDRNLDGNFA--------GHPRGEGGIRREALDWEREADTDGLLASL----------ERSGTAPGEAEGEPGAG---VRR------------------------RSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTTVLCSVERRGVDGVPEFLRACEAEGFSLQTVYRAAPSAPAPVELYEFS-KGV---FRGEAVAVVESDGGMEGGDGK 266
BLAST of mRNA_F-serratus_M_contig1337.2504.1 vs. uniprot
Match: A0A6H5KZX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX5_9PHAE) HSP 1 Score: 313 bits (802), Expect = 9.570e-101 Identity = 184/339 (54.28%), Postives = 210/339 (61.95%), Query Frame = 2
Query: 14 MAVSLAPRVKVLNKEFKRDDNDTVLCTDGIKLEFDGTILDLSQSWQHGEELAPIFSGACWAGTVVWQAALDLCDFMSEHFREDLAGATVVELGCGIGVPGMIARLLGATVILTEQDELLSLLDRNIASNFFQDLGSAGDGGTDAAGSIRRAALDWERTADADGIIASLNPSPDEKRTPESNSAGAGLEDGSNGGGSDRARRDGKVADYANTFASDGREMLEAQLGRKKRPDFILCADCVFEPLYGDSWKALAKVMGRLSDTGTTVLCSVERRGEDGVPQFFSACVAEGFKLQLVFLAAPDAPSPVEIYEFSRKGARDGFRCKAVG----GGSVDLGDGK 1018
MA P +KV+NK+FKRD NDTVLCTD +++EFDG LDL+QSW++GEE+APIFSGACWAGTVVW AALDLCD+MSEH R+ L GATVVELGCG+ DELLSLLDRN+ NF G G IRR ALDWER AD DG++AS+ E + G +G G G RR R R DF+LCADCVFEPLYGDSWKALAKVMGRLSD GTTVLCSVERRG DGVP F AC AEGF LQ V+ AAP A + VE+YEFS KG FR +AV G ++ GDGK
Sbjct: 1 MANPTQPGIKVINKDFKRDVNDTVLCTDRVEVEFDGVTLDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCDYMSEHLRQALVGATVVELGCGMF------------------DELLSLLDRNLDGNFA--------GHPRGEGGIRREALDWEREADTDGLLASM----------ERSGTVPGEAEGEPGAG---VRR------------------------RSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTTVLCSVERRGVDGVPDFLRACEAEGFSLQTVYRAAPSASAQVELYEFS-KGV---FRGEAVAVVESDGGMEGGDGK 272
BLAST of mRNA_F-serratus_M_contig1337.2504.1 vs. uniprot
Match: A0A836CJX9_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX9_9STRA) HSP 1 Score: 153 bits (386), Expect = 8.710e-40 Identity = 102/257 (39.69%), Postives = 124/257 (48.25%), Query Frame = 2
Query: 179 SGACWAGTVVWQAALDLCDFMSEHFREDLAG-ATVVELGCGIGVPGMIARLLGATVILTEQDELLSLLDRNIASNFFQDLGSAGDGGTD--AAGSIRRAALDWERTADADGIIASLNPSPDEKRTPESNSAGAGLEDGSNGGGSDRARRDGKVADYANTFASDGREMLEAQLGRKKRPDFILCADCVFEPLYGDSWKALAKVMGRLSDTGTTVLCSVERRGEDGVPQFFSACVAEGFKLQLVFLAAPDAPSPVEIYE 940
+GACWAGT+VWQAALDL D++S H LAG ATVVELGCGIGVPGM+A LLGA+ +LTEQ ELL LL RN+A+NF SA + A I A LDW A+D L PDFIL ADC++EPLYG+SWKAL + L T L VERR DG+ F A G ++ L A+ + P+E+YE
Sbjct: 30 AGACWAGTIVWQAALDLSDYLSRHHAGQLAGGATVVELGCGIGVPGMVAHLLGASAVLTEQAELLGLLRRNLAANFGVAHASASQVSSRRRTAPFISAAQLDW---------------------------------------------------------ATDDPRALLRDHFEGAHPDFILSADCIYEPLYGESWKALVTALRGLCGPHTRALVCVERRTADGINGFLDAARGAGLEVTLPH-ASGASGVPIELYE 228
BLAST of mRNA_F-serratus_M_contig1337.2504.1 vs. uniprot
Match: A0A7S2RY16_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY16_9STRA) HSP 1 Score: 130 bits (328), Expect = 3.460e-31 Identity = 90/250 (36.00%), Postives = 123/250 (49.20%), Query Frame = 2
Query: 170 PIFSGACWAGTVVWQAALDLCDFMSEHFREDLAGATVVELGCGIGVPGMIARLLGAT-VILTEQDELLSLLDRNIASNFFQDLGSAGDGGTDAAGSIRRAALDWERTADADGIIASLNPSPDEKRTPESNSAGAGLEDGSNGGGSDRARRDGKVADYANTFASDGREMLEAQLGRKKRPDFILCADCVFEPLYGDSWKALAKVMGRLS-DTGTTVLCSVERRGEDGVPQFFSACVAEGFKLQLVFLAAPD 913
PIF G CWAGT+VW AA + + + RE + GA+V+ELGCG+G PGM+A LLGA V+LTEQ LL LL RNIA NF +AG+G A G+ L W S R++++++ G D IL DCVFEPLYG+SW L + + L+ D TT++ +ERR EDGVP+F + + + F L+LV+ + D
Sbjct: 2 PIFGGCCWAGTIVWAAAQAVMEHVLFPERERVQGASVIELGCGLGAPGMVAALLGARDVLLTEQSSLLPLLHRNIARNF----PAAGEGAVAAPGAQE---LAWGN--------------------------------------------------------SQVRDLIDSRRGETF--DLILVCDCVFEPLYGESWVLLCETLRHLAVDESTTLVVGLERRSEDGVPKFLAE-LGKDFDLKLVWTSFQD 185
BLAST of mRNA_F-serratus_M_contig1337.2504.1 vs. uniprot
Match: A0A024FZ75_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZ75_9STRA) HSP 1 Score: 126 bits (316), Expect = 1.340e-29 Identity = 99/269 (36.80%), Postives = 131/269 (48.70%), Query Frame = 2
Query: 158 EELAPIFSGACWAGTVVWQAALDLCDFMSEHFREDLAGAT----VVELGCGIGVPGMIARLLGA-TVILTEQDELLSLLDRNIASNFFQDLGSAGDGGTDAAGSIRRAALDWERTADADGIIASLNPSPDEKRTPESNSAGAGLEDGSNGGGSDRARRDGKVADYANTFASDGREMLEAQLGRKKRPDFILCADCVFEPLYGDSWKALAKVMGRLSDTGT--TVLCSVERRGEDGVPQFFSACVAE-GFKLQLVFLAAPDAPSPVEIYE 940
EELAP+FSGA WAGTVVW AA+ L + H+ +L A V+ELG GIGVPGM AR+ GA +VILTEQ++L+ L+ RNI SN A+A G L+P+ D+K E G L G + Y T+ + + DF+L DC+FEPLYGDSWKALA M + + +V SVERR EDGV +F A +L+ + A + +EIY+
Sbjct: 42 EELAPLFSGAAWAGTVVWDAAIYLTRYFLHHYGTELRNALRSTRVLELGAGIGVPGMAARIAGADSVILTEQEDLVDLIHRNIKSN-----------------------------ANALG----LHPANDKK---EQAIVGRVLSWGKE-----------SINTYLKTYHDE-------------QIDFVLSCDCIFEPLYGDSWKALAITMQEICELNPECSVFLSVERRKEDGVDRFLEHVDASTSLVSKLLEKSIGSAENLLEIYQ 250
BLAST of mRNA_F-serratus_M_contig1337.2504.1 vs. uniprot
Match: F0X125_9STRA (Uncharacterized protein AlNc14C546G12115 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X125_9STRA) HSP 1 Score: 125 bits (313), Expect = 4.390e-29 Identity = 100/305 (32.79%), Postives = 140/305 (45.90%), Query Frame = 2
Query: 74 NDTVLCTDGIKLEFDGTI-LDLSQSWQHGEELAPIFSGACWAGTVVWQAALDLCDFMSEHF----REDLAGATVVELGCGIGVPGMIARLLGA-TVILTEQDELLSLLDRNIASNFFQDLGSAGDGGTDAAGSIRRAA-----LDWERTADADGIIASLNPSPDEKRTPESNSAGAGLEDGSNGGGSDRARRDGKVADYANTFASDGREMLEAQLGRKKRPDFILCADCVFEPLYGDSWKALAKVMGRLSDTGTT--VLCSVERRGEDGVPQFFSACVAEGFKL-QLVFLAAPDAPSPVEIYEFS 946
ND + +++ +GT L LS + EELAP+FSGA WAGTVVW AA+ L + H+ R+ L V+ELG GIGVPGM AR+ GA +VILTEQ++L+ L+ RN+ N A G DAA + A L W + + + +Y T+ + + DF+L DC+F PLYGDSWKALA M + +T V SVERR EDGV F + + +L+ + A + +EIY+ +
Sbjct: 23 NDDTKLNESVEVLVNGTTKLTLSLLLKE-EELAPLFSGAAWAGTVVWDAAIYLARYFLHHYGAILRDKLRSIRVLELGAGIGVPGMAARIAGAESVILTEQEDLVDLMHRNLKGN-------ANALGLDAANDKKEQAIVGRVLSWGKES---------------------------------------------IHNYLMTYQDE-------------QIDFVLSCDCIFVPLYGDSWKALAITMQAICETNPQCCVFLSVERRKEDGVDSFLEYIASRTILISKLLEKSIASAENLLEIYQLN 261
BLAST of mRNA_F-serratus_M_contig1337.2504.1 vs. uniprot
Match: A0A8J2SF35_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SF35_9STRA) HSP 1 Score: 124 bits (310), Expect = 9.340e-29 Identity = 92/272 (33.82%), Postives = 120/272 (44.12%), Query Frame = 2
Query: 158 EELAPIFSGACWAGTVVWQAALDLCD--FMSEHFREDLAGATVVELGCGIGVPGMIARLLGA-TVILTEQDELLSLLDRNIASNFFQDLGSAGDGGTDAAGSIRRAALDWERTADADGIIASLNPSPDEKRTPESNSAGAGLEDGSNGGGSDRARRDGKVADYANTFASDGREMLEAQLGRKKRPDFILCADCVFEPLYGDSWKALAKVMGRLSDTGTTVLCSVERR----GEDGVPQFFSACVAEGFKLQLVFLAAPDAPSPVEIYEFSRK 952
++L P+FSGA WAGTV+W+AA L D F+ + + G T +ELGCG+GVPGM LGA V LTEQ L+ LL RN+A+NF SAG+ +R + W R G E L+ D I+C DCV+ PLYGDSWKAL + + L+ T VL S+ERR G+DGV F A GF + A PVE++ F R+
Sbjct: 59 DDLEPVFSGAAWAGTVLWRAAAVLVDRAFLGADAVQ-IKGRTCIELGCGLGVPGMACARLGARNVALTEQQSLVDLLTRNVAANF-----SAGE-------DVRAVSFPWSRA---------------------------------------------------------GAEALKHDFCDGGCFDVIVCCDCVYMPLYGDSWKALLEAIDALAGPATDVLISLERRHVKDGDDGVDPFLEGMRANGFAR-----TSYPAAMPVEVFRFRRE 255
BLAST of mRNA_F-serratus_M_contig1337.2504.1 vs. uniprot
Match: A0A485LF75_9STRA (Aste57867_19896 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF75_9STRA) HSP 1 Score: 122 bits (306), Expect = 2.420e-28 Identity = 89/261 (34.10%), Postives = 120/261 (45.98%), Query Frame = 2
Query: 86 LCTDGIKLEFDGTILDLSQSWQHGEELAPIFSGACWAGTVVWQAALDLCDFMSEHFREDLAGATVVELGCGIGVPGMIARLLGAT-VILTEQDELLSLLDRNIASNFFQDLGSAGDGGTDAAGSIRRAALDWERTADADGIIASLNPSPDEKRTPESNSAGAGLEDGSNGGGSDRARRDGKVADYANTFASDGREMLEAQLGRKKRPDFILCADCVFEPLYGDSWKALAKVMGRLS--DTGTTVLCSVERRGEDGVPQFFS 859
+C + I++ LDL+ +ELAP+F+GA WAGT+VW AA+ L +F+ DL V+ELG GIGVPGM+A LLGA V++TEQ EL+ LL NI NF DA S+ AAL W+R A + +TF + D +L DC+++PLYG+SW+ALA M L + VL SVERR EDG+ F +
Sbjct: 14 VCEERIRIGVRDKELDLTLLLDE-DELAPLFAGAAWAGTLVWDAAIVLSNFLLNDV--DLTAKRVIELGAGIGVPGMVASLLGAKDVVITEQPELVPLLRTNIRRNFQT---------IDAGRSVAAAALSWDRAA---------------------------------------------ATAFCDTFGTF---------------DIVLSCDCIYQPLYGESWRALALTMDVLCHRNPACVVLVSVERRHEDGIDDFLA 202
BLAST of mRNA_F-serratus_M_contig1337.2504.1 vs. uniprot
Match: A0A7S3JW58_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JW58_9STRA) HSP 1 Score: 124 bits (310), Expect = 2.710e-28 Identity = 94/271 (34.69%), Postives = 132/271 (48.71%), Query Frame = 2
Query: 158 EELAPIFSGACWAGTVVWQAALDLCD--FMSEHFR--EDLAGATVVELGCGIGVPGMIARLLGATVI-LTEQDELLSLLDRNIASNFFQDLGSAGDGGTDAAGSIRRAALDWERTADADGIIASLNPSPDEKRTPESNSAGAGLEDGSNGGGSDRARRDGKVADYANTFASDGREMLEAQLGRKKRPDFILCADCVFEPLYGDSWKALAKVMGRLSDTGTTVLCSVERR----GEDGVPQFFSACVAEGFKLQLVFLAAPDAPSPVEIYEF 943
+ + PIFSG WAGTV+W+AA+ L D F+S++ + ++L A+V+ELGCG+GVPGM+A +LGA ++ LTEQ L+SLLDRNI +NF D T+ + R LDW A+ IA N E+L+ + D +L DCV+ PLYGDSW+AL + ++ + VL +VERR G DGV F +A + F L+ + PVEIY F
Sbjct: 86 DAIEPIFSGGAWAGTVLWRAAIRLVDICFLSDNKKGIDELQSASVIELGCGLGVPGMVAAVLGARLVALTEQSNLVSLLDRNIKANFLSD-------STNNPRIVARE-LDWC----AEQAIALRN------------------------------------------------ELLDGEPF-----DIVLSCDCVYIPLYGDSWRALVDAIIAVAGPKSLVLVAVERRYVQGGTDGVDLFLNAMTSANFIPSLI------SEPPVEIYSF 285
BLAST of mRNA_F-serratus_M_contig1337.2504.1 vs. uniprot
Match: A0A1V9YH22_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH22_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.490e-26 Identity = 99/304 (32.57%), Postives = 131/304 (43.09%), Query Frame = 2
Query: 71 DNDTV-LCTDGIKLEFDGTILDLSQSWQHGEELAPIFSGACWAGTVVWQAALDLCDFMSEHFREDLAGATVVELGCGIGVPGMIARLLGAT-VILTEQDELLSLLDRNIASNFFQDLGSAGDGGTDAAGSIRRAALDWERTADADGIIASLNPSPDEKRTPESNSAGAGLEDGSNGGGSDRARRDGKVADYANTFASDGREMLEAQLGRKKRPDFILCADCVFEPLYGDSWKALAKVMGRL--SDTGTTVLCSVERRGEDGVPQFFSACVAEGFKLQLVFLAAP-------DAPSPVEIYEFSR 949
++D V +C + I + + LD+S EELAP+F GA WAGT+VW+AA L ++M D++ V+ELG G+GVPGM+A LLGA V+LTEQ EL+ LL NI NF AG A S+ A L W GRE A + D +L DCV+EPLYG+SW+ALA M L ++ L SVERR DG+ +F + + A P D +EIY SR
Sbjct: 9 EHDAVKVCEERIVIHVEDKSLDISLLLDE-EELAPLFCGAAWAGTLVWEAAELLSNYMLNEL--DVSSLRVLELGAGLGVPGMVAGLLGAQHVVLTEQPELVPLLRTNIRRNF------AG------ANSVAAAELSW------------------------------------------------------------GREATRAFVATHGTFDVLLSCDCVYEPLYGESWRALAHTMDELCAANPACRALVSVERRHGDGIDRFLAFLPTATRLTASLLRAVPKATRGLCDEGDAIEIYVISR 237 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1337.2504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1337.2504.1 >prot_F-serratus_M_contig1337.2504.1 ID=prot_F-serratus_M_contig1337.2504.1|Name=mRNA_F-serratus_M_contig1337.2504.1|organism=Fucus serratus male|type=polypeptide|length=336bp MAVSLAPRVKVLNKEFKRDDNDTVLCTDGIKLEFDGTILDLSQSWQHGEEback to top mRNA from alignment at F-serratus_M_contig1337:165511..179010+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1337.2504.1 ID=mRNA_F-serratus_M_contig1337.2504.1|Name=mRNA_F-serratus_M_contig1337.2504.1|organism=Fucus serratus male|type=mRNA|length=13500bp|location=Sequence derived from alignment at F-serratus_M_contig1337:165511..179010+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1337:165511..179010+ >mRNA_F-serratus_M_contig1337.2504.1 ID=mRNA_F-serratus_M_contig1337.2504.1|Name=mRNA_F-serratus_M_contig1337.2504.1|organism=Fucus serratus male|type=CDS|length=2016bp|location=Sequence derived from alignment at F-serratus_M_contig1337:165511..179010+ (Fucus serratus male)back to top |