mRNA_F-serratus_M_contig1336.2496.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1336.2496.1
Unique NamemRNA_F-serratus_M_contig1336.2496.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1336.2496.1 vs. uniprot
Match: D7G1X1_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.940e-18
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   46 MTRKRNRGSSGGMSKWDSMPWKSIEPTLQPDDGWQSTSGEDQALLYSLEEISGGDYALQ 222
            M+RKR R  +GG  +WD++PWK+IEP L+ DDGWQ  +GE+QALLY+LEEISG DY L+
Sbjct:    1 MSRKRGRKGAGGGQRWDALPWKTIEPPLERDDGWQGMAGEEQALLYTLEEISGNDYCLR 59
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1336.2496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1X1_ECTSI1.940e-1862.71DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1336contigF-serratus_M_contig1336:121644..123227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue5.4e-16
Seed eggNOG ortholog2880.D7G1X1
KEGG koko:K14805
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0347@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons3
Model size339
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1336.2496.1prot_F-serratus_M_contig1336.2496.1Fucus serratus malepolypeptideF-serratus_M_contig1336 121644..123227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929310.8206081-CDS-F-serratus_M_contig1336:121643..1217751622929310.8206081-CDS-F-serratus_M_contig1336:121643..121775Fucus serratus maleCDSF-serratus_M_contig1336 121644..121775 +
1690962793.2278466-CDS-F-serratus_M_contig1336:121643..1217751690962793.2278466-CDS-F-serratus_M_contig1336:121643..121775Fucus serratus maleCDSF-serratus_M_contig1336 121644..121775 +
1622929310.8332531-CDS-F-serratus_M_contig1336:122383..1224951622929310.8332531-CDS-F-serratus_M_contig1336:122383..122495Fucus serratus maleCDSF-serratus_M_contig1336 122384..122495 +
1690962793.2483096-CDS-F-serratus_M_contig1336:122383..1224951690962793.2483096-CDS-F-serratus_M_contig1336:122383..122495Fucus serratus maleCDSF-serratus_M_contig1336 122384..122495 +
1622929310.842355-CDS-F-serratus_M_contig1336:123132..1232271622929310.842355-CDS-F-serratus_M_contig1336:123132..123227Fucus serratus maleCDSF-serratus_M_contig1336 123133..123227 +
1690962793.265218-CDS-F-serratus_M_contig1336:123132..1232271690962793.265218-CDS-F-serratus_M_contig1336:123132..123227Fucus serratus maleCDSF-serratus_M_contig1336 123133..123227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1336.2496.1

>prot_F-serratus_M_contig1336.2496.1 ID=prot_F-serratus_M_contig1336.2496.1|Name=mRNA_F-serratus_M_contig1336.2496.1|organism=Fucus serratus male|type=polypeptide|length=113bp
PGLELFEEIVTIAEAMTRKRNRGSSGGMSKWDSMPWKSIEPTLQPDDGWQ
STSGEDQALLYSLEEISGGDYALQCASGGNTDGGRPGRAGGGDNGSEGAA
TRSAGSPAGDFKG
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mRNA from alignment at F-serratus_M_contig1336:121644..123227+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1336.2496.1 ID=mRNA_F-serratus_M_contig1336.2496.1|Name=mRNA_F-serratus_M_contig1336.2496.1|organism=Fucus serratus male|type=mRNA|length=1584bp|location=Sequence derived from alignment at F-serratus_M_contig1336:121644..123227+ (Fucus serratus male)
CCGGGGTTAGAATTGTTCGAGGAGATCGTGACGATCGCTGAAGCCATGAC
CCGCAAACGGAATCGGGGTTCCTCGGGTGGGATGTCAAAGTGGGATTCGA
TGCCATGGAAATCCATTGAGCCTACGCTCCAGGTCGGTACCACTCAGGCA
CTAGATAGAGAGCCAACCATATAACAAGTACTACTCAAGTTCACATACAA
GTATACAGCAGTTCTCCGCACAAGTCTGCTCAAGTACAGCAGCAGGCACA
TAGTGTACGTACAACTGATATACAGACTACGCCCTGCGCTTTCGTGGCCA
ACTCTCAAGACATCCATCAAGGGGATCAATACTGCTGATGTTGCTGGGTG
ATGTTACCGGGCCCTGCGCACATGGGGGTGAGATGATCGCACAATCTCCA
TATCACCCACGAACACTAACGAAGTGTGTACAGGATGTCATCGACCGTAG
TACCAGGTATAATATAATACACCAGGTTATATAGCACATAGTTTATAGTA
GTATTAATAGTCGAAGCAGTAACCTCTGACGTTATTATAATATTAAAGTT
AGAGCCCTGCTGCCGATCGAGCTGATACGCTTACGGTCATCACCACGTCG
GAGCCTTCGCGGAAGAAAATAGTCGGCGCTGATCGGGAGATGTCTTCTTT
CTTGCCTAACCATCATTCCGTTTCGAAACCCGTACCTGGCACAACATTTA
CCGGGGTTCGCGATATTCCTGAATGCACGGGAAAAAACAGCCCGACGATG
GCTGGCAGAGCACGAGTGGCGAGGACCAAGCCTTGCTGTACTCCCTCGAG
GAGATCTCCGGTGGCGACTACGCCCTCCAGTGCGCCTCTGGGGGGAACAC
AGGTGACCGCGCGCATAGCATCCATAATCGTTTTTTGAAGTATTACCTTA
CCAGCATAAAGTATAAGTTGTCGGCGGTTAGACTACAATAATGTCCTGTC
TCACAATACATGACAGTAGTATCGTAGAAATCAAGTGATTTCCCCTGAAA
CCAAAATTTCTTCTTCTCTACTTAAAACATATATTATAAGCTACACTTTT
TGTTGTTGTTGTTAAGACTATAATAGTATTTTCCGCGGCGGCGTCCATAT
AATAATATTAAACCGCCATACGCCATCGGGCTTCAGTCCCTATAATAGTA
TTTATATTTCACCCTGACTAAACAAACACACCTCGAAAAAGCCAACCCTT
TGAAATACGGGCACCAATGTGGAGCTGAGTCATGTGAAAGGGTCAAAAGG
AGGCACTAAATATTAATAGTTGGTCCCTACAAGTTTTGCACCTGGGCGAC
ATAATGGTTCGCAATGCGGTCCGTTAGCTTACCTTTCCAACATCCTCGCC
ATCTCCCAGCTGTGTGATAAATGCGACGCCCGCGCCTTGTCTGATCTTTT
CCCTAAAGGCCCCCCGCGCTTGCGCACCTTTTCCTCCGCGTGTTTTGTTT
CTTTGCGTGTGTGCGTGCCTCGTTTTCTGTTGCCTCCAGATGGTGGTCGC
CCGGGACGAGCCGGCGGAGGAGATAACGGCAGTGAAGGAGCTGCGACGAG
ATCCGCAGGATCCCCCGCTGGCGATTTCAAGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1336:121644..123227+

>mRNA_F-serratus_M_contig1336.2496.1 ID=mRNA_F-serratus_M_contig1336.2496.1|Name=mRNA_F-serratus_M_contig1336.2496.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig1336:121644..123227+ (Fucus serratus male)
CCGGGGTTAGAATTGTTCGAGGAGATCGTGACGATCGCTGAAGCCATGAC
CCGCAAACGGAATCGGGGTTCCTCGGGTGGGATGTCAAAGTGGGATTCGA
TGCCATGGAAATCCATTGAGCCTACGCTCCAGCCGGGGTTAGAATTGTTC
GAGGAGATCGTGACGATCGCTGAAGCCATGACCCGCAAACGGAATCGGGG
TTCCTCGGGTGGGATGTCAAAGTGGGATTCGATGCCATGGAAATCCATTG
AGCCTACGCTCCAGCCCGACGATGGCTGGCAGAGCACGAGTGGCGAGGAC
CAAGCCTTGCTGTACTCCCTCGAGGAGATCTCCGGTGGCGACTACGCCCT
CCAGTGCGCCTCTGGGGGGAACACAGCCCGACGATGGCTGGCAGAGCACG
AGTGGCGAGGACCAAGCCTTGCTGTACTCCCTCGAGGAGATCTCCGGTGG
CGACTACGCCCTCCAGTGCGCCTCTGGGGGGAACACAGATGGTGGTCGCC
CGGGACGAGCCGGCGGAGGAGATAACGGCAGTGAAGGAGCTGCGACGAGA
TCCGCAGGATCCCCCGCTGGCGATTTCAAGGGGATGGTGGTCGCCCGGGA
CGAGCCGGCGGAGGAGATAACGGCAGTGAAGGAGCTGCGACGAGATCCGC
AGGATCCCCCGCTGGCGATTTCAAGGGG
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