mRNA_F-serratus_M_contig1330.2473.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1330.2473.1
Unique NamemRNA_F-serratus_M_contig1330.2473.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A2R4QQ38_9PHAE (50S ribosomal protein L23 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ38_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.410e-27
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSG 216
            + K KL+SII LIKYP+TTPKTLLLLE NQY FLVDPK NKLNIKKAI F+F+VKVIKVNSCN  +K    G
Sbjct:    1 MVKIKLSSIIDLIKYPVTTPKTLLLLENNQYTFLVDPKLNKLNIKKAIEFLFNVKVIKVNSCNLPKKKRRVG 72          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A141BSN9_9PHAE (50S ribosomal protein L23, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSN9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.480e-26
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSG 216
            + K KL+S+I LIKYP+TTPKTLLLLE NQY F+VDPK NK NIKK+I F+F+VKVIKVNSCN  +K    G
Sbjct:    1 MVKRKLSSLIDLIKYPVTTPKTLLLLENNQYTFMVDPKLNKFNIKKSIEFLFNVKVIKVNSCNLPKKKRRVG 72          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A0R6LUV2_UNDPI (50S ribosomal protein L23, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUV2_UNDPI)

HSP 1 Score: 90.5 bits (223), Expect = 8.270e-22
Identity = 46/72 (63.89%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSG 216
            + + K +S I LIKYP+TT KT LLLE NQY FLVDPK NK++IKKAI F+FDV VIKVNSCN  +K    G
Sbjct:    1 MARIKFSSSIDLIKYPVTTIKTNLLLENNQYTFLVDPKLNKVSIKKAIEFLFDVSVIKVNSCNLPKKKRRVG 72          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A8F0JZN8_9PHAE (Ribosomal protein L23 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZN8_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 6.750e-21
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSGDLL 225
            + + K +S I LIKYPI+T KT LLLE NQY FLVDP   K+N+KKAI F+F+VKVIKVNSCN  +K    G  +
Sbjct:    1 MARIKFSSTIDLIKYPISTNKTSLLLENNQYTFLVDPVLTKINVKKAIEFLFNVKVIKVNSCNLPKKKRRVGQFI 75          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A1I9LVJ8_9PHAE (50S ribosomal protein L23, chloroplastic n=8 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.740e-20
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   19 NSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSG 216
            +S I LIKYP+ T KT LL E NQY FLVDP+ NK+NIKKAI F+FDVK+IK+NSCN  +K    G
Sbjct:    7 SSSIDLIKYPLITSKTNLLFEHNQYTFLVDPRLNKVNIKKAIEFLFDVKIIKINSCNLPKKKRRIG 72          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A8E5FAP4_9PHAE (Ribosomal protein L23 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5FAP4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.140e-19
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    7 KTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCN 189
            K +LNS I LIKYP+ T K   L+ KNQY FLVDP+  K+NIKKAI F+FD+K+IK+NSCN
Sbjct:    3 KMELNSSIDLIKYPLNTTKAKGLISKNQYTFLVDPRLTKINIKKAIEFLFDIKIIKINSCN 63          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A8F0F780_9PHAE (Ribosomal protein L23 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F780_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.820e-18
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   16 LNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSG 216
            +NS I LIKYP+TT KT LLLE NQY FLVD K  K+ IKKAI  +F+VKVIK+NSCN  +K    G
Sbjct:    6 INSSIDLIKYPMTTDKTNLLLENNQYTFLVDRKMTKIAIKKAIELLFNVKVIKINSCNLPKKKRRVG 72          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A8F0JZQ2_9PHAE (Ribosomal protein L23 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZQ2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.480e-17
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   19 NSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSGDLLVF 231
            +S I LIK P+ T KT LLLE NQY FLVDPK  K+N+K+AI F+F+V VIK+NSCN  +K    G  + F
Sbjct:    7 SSSIDLIKCPVITIKTNLLLENNQYTFLVDPKLTKVNVKQAIEFLFNVNVIKINSCNLPKKKRRMGKSIGF 77          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A2I4Q2I3_9PHAE (50S ribosomal protein L23, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I3_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 6.650e-17
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSGDL 222
            + K   ++ + LIK P+TT KT  L EKNQY FLVDPK +K  IKKAI F+F VK+IK+N+CN  +K    G L
Sbjct:    1 MAKINFSTSLDLIKQPLTTLKTSQLFEKNQYTFLVDPKLDKPTIKKAIEFLFSVKIIKINTCNLPKKTRRVGQL 74          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A222AHH3_9CRYP (Ribosomal protein L23 n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A222AHH3_9CRYP)

HSP 1 Score: 75.9 bits (185), Expect = 4.500e-16
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   16 LNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSGDLL 225
            L  +I LIKYPI T K   LLE NQY F VDPK NKL+IKKAI ++F+VKVI VN+ N   K    G  +
Sbjct:    3 LKHLIDLIKYPIITDKATKLLELNQYTFAVDPKSNKLHIKKAIEYLFNVKVISVNTANPPAKQRRIGKFI 72          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ38_9PHAE1.410e-2773.6150S ribosomal protein L23 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSN9_9PHAE6.480e-2668.0650S ribosomal protein L23, chloroplastic n=13 Tax=... [more]
A0A0R6LUV2_UNDPI8.270e-2263.8950S ribosomal protein L23, chloroplastic n=25 Tax=... [more]
A0A8F0JZN8_9PHAE6.750e-2158.67Ribosomal protein L23 n=1 Tax=Desmarestia aculeata... [more]
A0A1I9LVJ8_9PHAE2.740e-2063.6450S ribosomal protein L23, chloroplastic n=8 Tax=E... [more]
A0A8E5FAP4_9PHAE4.140e-1963.93Ribosomal protein L23 n=1 Tax=Phaeophyceae sp. Tax... [more]
A0A8F0F780_9PHAE1.820e-1862.69Ribosomal protein L23 n=1 Tax=Protohalopteris sp. ... [more]
A0A8F0JZQ2_9PHAE1.480e-1756.34Ribosomal protein L23 n=1 Tax=Chorda asiatica TaxI... [more]
A0A2I4Q2I3_9PHAE6.650e-1752.7050S ribosomal protein L23, chloroplastic n=1 Tax=D... [more]
A0A222AHH3_9CRYP4.500e-1655.71Ribosomal protein L23 n=1 Tax=Cryptomonas curvata ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1330contigF-serratus_M_contig1330:24113..24381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size269
Cds size147
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929304.4760935-UTR-F-serratus_M_contig1330:24112..242341622929304.4760935-UTR-F-serratus_M_contig1330:24112..24234Fucus serratus maleUTRF-serratus_M_contig1330 24113..24234 -
1690962791.438822-UTR-F-serratus_M_contig1330:24112..242341690962791.438822-UTR-F-serratus_M_contig1330:24112..24234Fucus serratus maleUTRF-serratus_M_contig1330 24113..24234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929304.4956267-CDS-F-serratus_M_contig1330:24234..243811622929304.4956267-CDS-F-serratus_M_contig1330:24234..24381Fucus serratus maleCDSF-serratus_M_contig1330 24235..24381 -
1690962791.4468992-CDS-F-serratus_M_contig1330:24234..243811690962791.4468992-CDS-F-serratus_M_contig1330:24234..24381Fucus serratus maleCDSF-serratus_M_contig1330 24235..24381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1330.2473.1prot_F-serratus_M_contig1330.2473.1Fucus serratus malepolypeptideF-serratus_M_contig1330 24235..24381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1330.2473.1

>prot_F-serratus_M_contig1330.2473.1 ID=prot_F-serratus_M_contig1330.2473.1|Name=mRNA_F-serratus_M_contig1330.2473.1|organism=Fucus serratus male|type=polypeptide|length=49bp
LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*
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mRNA from alignment at F-serratus_M_contig1330:24113..24381-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1330.2473.1 ID=mRNA_F-serratus_M_contig1330.2473.1|Name=mRNA_F-serratus_M_contig1330.2473.1|organism=Fucus serratus male|type=mRNA|length=269bp|location=Sequence derived from alignment at F-serratus_M_contig1330:24113..24381- (Fucus serratus male)
CTCACGAAAACAAAATTGAATTCAATTATTGGTTTAATTAAATACCCAAT AACAACTCCCAAAACTCTTTTATTACTAGAAAAGAATCAATATGCATTTT TGGTAGACCCTAAACATAATAAACTTAATATAAAAAAAGCAATATAATTT GTATTTGATGTAAAAGTTATCAAGGTTAATAGCTGTAATCAAACGGAAAA AAACGTCTTGTCGGGCGATTTATTGGTGTTCGACCTCGATATAAAATGGT GATAGTTAAATTAGCAAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1330:24113..24381-

>mRNA_F-serratus_M_contig1330.2473.1 ID=mRNA_F-serratus_M_contig1330.2473.1|Name=mRNA_F-serratus_M_contig1330.2473.1|organism=Fucus serratus male|type=CDS|length=294bp|location=Sequence derived from alignment at F-serratus_M_contig1330:24113..24381- (Fucus serratus male)
CTCACGAAAACAAAATTGAATTCAATTATTGGTTTAATTAAATACCCAAT
AACAACTCCCAAAACTCTTTTATTACTAGAAAAGAATCAATATGCATTTT
TGGTAGACCCTAAACATAATAAACTTAATATAAAAAAAGCAATATAACTC
ACGAAAACAAAATTGAATTCAATTATTGGTTTAATTAAATACCCAATAAC
AACTCCCAAAACTCTTTTATTACTAGAAAAGAATCAATATGCATTTTTGG
TAGACCCTAAACATAATAAACTTAATATAAAAAAAGCAATATAA
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