mRNA_F-serratus_M_contig133.2464.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig133.2464.1
Unique NamemRNA_F-serratus_M_contig133.2464.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig133.2464.1 vs. uniprot
Match: D7G8J0_ECTSI (Ubiquitin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8J0_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.570e-32
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = 2 
Query:  593 QAMVAAASESEQRIRGWRHGLIPFAKDANGNFLVADTNARGCPVEEWDA-EGEVSTVSKTFSLFLECYRNNLLSGRCEYVDGIGIIEKIDNAS 868
            +AMVAAA + E R+ GWR GLIPFAKD + +FLV DT ARGCPV EWDA +GE  TV+KTFSLFLE +RN LLSG+CEYV+G+G++EKI  ++
Sbjct:   31 KAMVAAAFKMEGRVSGWRAGLIPFAKDVDDSFLVTDTQARGCPVVEWDAADGEGGTVAKTFSLFLEGFRNELLSGQCEYVEGLGVVEKITKSN 123
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BLAST of mRNA_F-serratus_M_contig133.2464.1 vs. uniprot
Match: A0A6H5L717_9PHAE (SMI1_KNR4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L717_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.330e-31
Identity = 68/139 (48.92%), Postives = 93/139 (66.91%), Query Frame = 2 
Query:  455 AGSRQVKYAPSSTRTGLPSDGNMMTTLENNGVESTLTNLLHLLCVIQAMVAAASESEQRIRGWRHGLIPFAKDANGNFLVADTNARGCPVEEWDA-EGEVSTVSKTFSLFLECYRNNLLSGRCEYVDGIGIIEKIDNAS 868
            A    ++    +T T +P +   + T+++   +   +    L C  +AMVAAA + E R+ GWR GLIPFAKD + NFLV DT ARGCPV EWDA +GE  TV+ TFSLFLE +RN LL+GRCEYV+G+G++EKI  ++
Sbjct:   45 AQDADIQALEKATDTTIPEELRSIMTIQDG--QLWFSEKQALTC--KAMVAAAFKMEGRVPGWRAGLIPFAKDVDDNFLVTDTQARGCPVVEWDAADGEGGTVATTFSLFLEGFRNELLAGRCEYVEGLGVVEKITKSN 179
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BLAST of mRNA_F-serratus_M_contig133.2464.1 vs. uniprot
Match: A0A7S2V2L4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2L4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.020e-13
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 2 
Query:  650 GLIPFAKDANGNFLVADTNARGCPVEEWDAE-GEVSTVSKTFSLFLECYRNNLLSGRCEYVDGIGIIE 850
            GL+P AKD + NFLV DTN+    + EWDA+ G+ S V+ +F+ FLE +RNNLLSG+ E++D  GI+E
Sbjct:  101 GLLPIAKDVDDNFLVVDTNSPRAALYEWDADSGKGSCVATSFNAFLELFRNNLLSGKYEFIDDTGIVE 168
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BLAST of mRNA_F-serratus_M_contig133.2464.1 vs. uniprot
Match: A0A482SU82_9ARCH (SMI1/KNR4 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SU82_9ARCH)

HSP 1 Score: 75.5 bits (184), Expect = 2.500e-12
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 2 
Query:  617 ESEQRIRGWRHGLIPFAKDANGNFLVADTNARGCPVEEWDAE-GEVSTVSKTFSLFLECYRNNLLSGRCEYVDGIGIIEKI 856
            E+ ++ R WR+GL+P   D +G  LV DT  R   V EWDA+ G    VS     +LE YRN+LLSG  EYVDG+G+IEK+
Sbjct:   79 ENHEKSRKWRNGLVPLCGDDSG-ALVVDTENRNA-VSEWDADDGLGDEVSSNIVRYLESYRNDLLSGHFEYVDGLGVIEKM 157
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BLAST of mRNA_F-serratus_M_contig133.2464.1 vs. uniprot
Match: A0A2D4BNQ9_PYTIN (SMI1_KNR4 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNQ9_PYTIN)

HSP 1 Score: 75.1 bits (183), Expect = 4.280e-12
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 2 
Query:  602 VAAASESEQRIRGWRHGLIPFAKDANGNFLVADTNARGCPVEEWDAEGEVSTVSKTFSLFLECYRNNLLSGRCEYVDGIGIIEK 853
            +A  +ES  R  GW+   +PFA DA+GN LV D     C V  +  +G    ++ + S +LE YRN LLSGR ++V+ +G++E+
Sbjct:   87 IARTAESLSRASGWKSSFVPFAADADGNALVTDAATAKCAVFAFGDDGRGRDLAPSLSTYLEEYRNRLLSGRFDFVEDVGLVER 170
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BLAST of mRNA_F-serratus_M_contig133.2464.1 vs. uniprot
Match: A0A225UD52_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UD52_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.310e-10
Identity = 31/81 (38.27%), Postives = 55/81 (67.90%), Query Frame = 2 
Query:  614 SESEQRIRGWRHGLIPFAKDANGNFLVADTNARGCPVEEWDAEGEVST-VSKTFSLFLECYRNNLLSGRCEYVDGIGIIEK 853
            +E+   +RGW    IPFA + +G  L+ADT++R   V E++ +G+ S+ ++ T   +LE YRN LLSG+ ++V+ +G++E+
Sbjct:    6 AETLGSVRGWDSSFIPFAANVDGGALIADTSSRNA-VFEFNEDGKSSSPLAPTLLEYLETYRNRLLSGKFDFVEDVGLVER 85
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BLAST of mRNA_F-serratus_M_contig133.2464.1 vs. uniprot
Match: G4YZV6_PHYSP (SMI1_KNR4 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YZV6_PHYSP)

HSP 1 Score: 62.0 bits (149), Expect = 1.480e-7
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 2 
Query:  614 SESEQRIRGWRHGLIPFAKDANGNFLVADTNARGCPVEEWDAEGEVST-VSKTFSLFLECYRNNLLSGRCEYVDGIGIIEK 853
            +ES   I+GW    IPFA + +G  L+ DT+AR   V E++ +G+    ++ T   +LE YRN LLSG+ ++V+ +G++E+
Sbjct:   92 AESLGSIKGWESLFIPFAANVDGGALITDTSARNA-VFEFNEDGKGDRPLAPTLLEYLEKYRNRLLSGKFDFVEDVGLVER 171
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BLAST of mRNA_F-serratus_M_contig133.2464.1 vs. uniprot
Match: A0A0W8CR21_PHYNI (acidPPc domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CR21_PHYNI)

HSP 1 Score: 62.0 bits (149), Expect = 4.020e-7
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 2 
Query:  614 SESEQRIRGWRHGLIPFAKDANGNFLVADTNARGCPVE-EWDAEGEVSTVSKTFSLFLECYRNNLLSGRCEYVDGIGIIEK 853
            +E+   I+GW   LIPFA + +G  LV DT +R    E   D +G+    S     +LE YRN LLSG+ ++V+ +G++E+
Sbjct:  152 AEALASIKGWDSSLIPFAANVDGGALVTDTGSRNAVFEFSEDGKGDRPLASSLLE-YLEKYRNRLLSGKFDFVEDVGLVER 231
[Close]
BLAST of mRNA_F-serratus_M_contig133.2464.1 vs. uniprot
Match: D0NJD7_PHYIT (SMI1_KNR4 domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0NJD7_PHYIT)

HSP 1 Score: 60.5 bits (145), Expect = 5.040e-7
Identity = 29/81 (35.80%), Postives = 53/81 (65.43%), Query Frame = 2 
Query:  614 SESEQRIRGWRHGLIPFAKDANGNFLVADTNARGCPVEEWDAEGEVST-VSKTFSLFLECYRNNLLSGRCEYVDGIGIIEK 853
            +E+   I+GW   L+PFA + +G  LV+DT +R   V E++ +G+    ++ +   +LE YRN LLSG+ ++V+ +G++E+
Sbjct:   92 AETLASIKGWDSSLVPFAVNVDGGALVSDTGSRNA-VFEFNEDGKGDRPLAPSLLEYLEKYRNRLLSGKFDFVEDVGLVER 171
[Close]
BLAST of mRNA_F-serratus_M_contig133.2464.1 vs. uniprot
Match: A0A2P4YE54_9STRA (SMI1_KNR4 domain-containing protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YE54_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.210e-7
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 2 
Query:  632 IRGWRHGLIPFAKDANGNFLVADTNARGCPVE-EWDAEGEVSTVSKTFSLFLECYRNNLLSGRCEYVDGIGIIEK 853
            +R W    IPFA + +G  LV DTN R    E   D +G+   ++ +   +LE YRN LLSG+ +YV+ +G++E+
Sbjct:   93 VRDWDSSFIPFAANVDGGALVTDTNLRNAVFEFNEDGKGD-QPLAPSLLEYLEKYRNRLLSGKFDYVEDVGLVER 166
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig133.2464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G8J0_ECTSI2.570e-3265.59Ubiquitin family protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L717_9PHAE1.330e-3148.92SMI1_KNR4 domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2V2L4_9STRA2.020e-1352.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482SU82_9ARCH2.500e-1249.38SMI1/KNR4 family protein n=1 Tax=archaeon TaxID=19... [more]
A0A2D4BNQ9_PYTIN4.280e-1239.29SMI1_KNR4 domain-containing protein n=1 Tax=Pythiu... [more]
A0A225UD52_9STRA6.310e-1038.27Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
G4YZV6_PHYSP1.480e-738.27SMI1_KNR4 domain-containing protein n=3 Tax=Phytop... [more]
A0A0W8CR21_PHYNI4.020e-738.27acidPPc domain-containing protein n=1 Tax=Phytopht... [more]
D0NJD7_PHYIT5.040e-735.80SMI1_KNR4 domain-containing protein n=10 Tax=Phyto... [more]
A0A2P4YE54_9STRA6.210e-738.67SMI1_KNR4 domain-containing protein n=2 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig133contigF-serratus_M_contig133:543492..545456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue2.3e-27
Seed eggNOG ortholog2880.D7G8J0
Hectar predicted targeting categoryother localisation
EggNOG OGs2BVA8@1,2S24U@2759
Ec32 ortholog descriptionSMI1/KNR4 like domain
Ec32 orthologEc-14_003190.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1747
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig133.2464.1prot_F-serratus_M_contig133.2464.1Fucus serratus malepolypeptideF-serratus_M_contig133 544353..545008 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929302.4144304-UTR-F-serratus_M_contig133:543491..5443521622929302.4144304-UTR-F-serratus_M_contig133:543491..544352Fucus serratus maleUTRF-serratus_M_contig133 543492..544352 -
1690962790.7154944-UTR-F-serratus_M_contig133:543491..5443521690962790.7154944-UTR-F-serratus_M_contig133:543491..544352Fucus serratus maleUTRF-serratus_M_contig133 543492..544352 -
1622929302.4701746-UTR-F-serratus_M_contig133:545008..5454561622929302.4701746-UTR-F-serratus_M_contig133:545008..545456Fucus serratus maleUTRF-serratus_M_contig133 545009..545456 -
1690962790.7461576-UTR-F-serratus_M_contig133:545008..5454561690962790.7461576-UTR-F-serratus_M_contig133:545008..545456Fucus serratus maleUTRF-serratus_M_contig133 545009..545456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929302.4302773-CDS-F-serratus_M_contig133:544352..5445471622929302.4302773-CDS-F-serratus_M_contig133:544352..544547Fucus serratus maleCDSF-serratus_M_contig133 544353..544547 -
1690962790.7285416-CDS-F-serratus_M_contig133:544352..5445471690962790.7285416-CDS-F-serratus_M_contig133:544352..544547Fucus serratus maleCDSF-serratus_M_contig133 544353..544547 -
1622929302.4490216-CDS-F-serratus_M_contig133:544765..5450081622929302.4490216-CDS-F-serratus_M_contig133:544765..545008Fucus serratus maleCDSF-serratus_M_contig133 544766..545008 -
1690962790.7362132-CDS-F-serratus_M_contig133:544765..5450081690962790.7362132-CDS-F-serratus_M_contig133:544765..545008Fucus serratus maleCDSF-serratus_M_contig133 544766..545008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig133.2464.1

>prot_F-serratus_M_contig133.2464.1 ID=prot_F-serratus_M_contig133.2464.1|Name=mRNA_F-serratus_M_contig133.2464.1|organism=Fucus serratus male|type=polypeptide|length=146bp
MHAGSRQVKYAPSSTRTGLPSDGNMMTTLENNGVESTLTNLLHLLCVIQA
MVAAASESEQRIRGWRHGLIPFAKDANGNFLVADTNARGCPVEEWDAEGE
VSTVSKTFSLFLECYRNNLLSGRCEYVDGIGIIEKIDNASTRRGK*
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mRNA from alignment at F-serratus_M_contig133:543492..545456-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig133.2464.1 ID=mRNA_F-serratus_M_contig133.2464.1|Name=mRNA_F-serratus_M_contig133.2464.1|organism=Fucus serratus male|type=mRNA|length=1965bp|location=Sequence derived from alignment at F-serratus_M_contig133:543492..545456- (Fucus serratus male)
AGGAGCTTCTGTCCATTATGTCCATCCAAGATGGACAACTCTGGTTCTCC
GAGAAGCGGGCACTGGCGTGCAGGGTAACATAATGAAAATCGTACAAGTC
GCCTTAAATTACTTCTACAGGGAGATACCTCGGCGCACTTTTTTTCTTTC
CTTTTTCTTCAATCTCACTTATAGCCGATAGACCTCATTTTCGTCCTGCC
CATGGTCACTAAGGATCTTCCCATCTCTCCCCGGTTCACGTCTTACAATT
TTTTTATCACGATACGAGTCCGGCAATCTTACAATTCGTTAACCAATGGT
TGAATTTTACTTACTCGCGCTCCAAGCTTTCCGTTGCGAAAGAAGAAAAC
TAATTCCACTTTGGTAAGAATCGAACTCACGGCTTCCGCAATAGCAGGTG
TGCAGGTTACCTACTAAACCACTCGGGTGACGACACTATTAAGACAAAAT
GCACGCGGGTTCACGTCAAGTAAAGTACGCCCCGAGTAGTACACGTACAG
GTCTCCCGTCGGATGGTAACATGATGACTACGCTAGAAAATAATGGTGTT
GAGTCTACTCTCACAAATCTCCTACATTTATTGTGTGTGATCCAGGCAAT
GGTCGCAGCGGCATCAGAATCCGAGCAACGGATTCGCGGCTGGCGACATG
GACTTATTCCCTTTGCAAAGGACGCCAATGGCAACTTTCTGGTCAGGATA
GCCAGATCACTAGTCTTTGATAGATATTCCGTTGCCTGGAGCAGGAAGGA
TCCATATAACGTATCTGATTCTTGTAGCGATAGCTGTTATCATCATGTGC
GTCATTCATGCAGAAGCAAATACCGTCGCTGCTGCGATAGACCTAGGCAA
GCCGTGATCGCAAAAGGGAGATCCCCACGTTTCCCCCCTGTTCTGGTGAT
GATATCAAGGTCGCGGATACGAATGCGCGAGGATGCCCGGTCGAGGAGTG
GGACGCCGAAGGCGAGGTCAGCACCGTGTCCAAGACCTTTTCGCTCTTTT
TGGAATGCTACAGAAACAATCTTTTGTCTGGCCGTTGTGAGTATGTGGAT
GGCATCGGGATAATCGAAAAAATTGACAATGCTAGCACTCGCCGCGGGAA
GTAAATCGAAGTGTCGCGCGGAAGACGACTTTCGCCATTTGTCAGTGTTC
CGGTCGAACCCCAAGCCATCACCTAAATACTCAGAAGTGTGGGTCTGTTT
TCTAATAGTTTATATTCTGTAAAGCTTGAGACAAGAGGACGGTAGACGAA
CACAAGGAAGTGCTACTACGCATCACTGTTGGCGGCGGGGCCTTCGGAGC
GTCATATTTTGTATGAGTCTCTATTTTTTAGACCCGACAAGGCCTTTAAC
TTAAGCTCGCGATTAACCCACTTTTGTTGGTCAGCCAGCAAAGCTCTCCG
ACTGATCCGGCGGACGGCTAGTCATTCGAATTGCACATACTACTGTAAAA
AAAAAAGTCTACCCTTTTTTCGAGAACACTGAAAGCTCCTGTACTACTGC
CTGTACAAGTAGCCATTGTTCGATGATGATTTGGTAAAATGAGCAACGCA
TCAAATAGTGTTCTCTGTAGCCTGAAACTTAGATTCTGGAATACTGGCAG
CATACCAGACAGTAGTAGTCATAAACCGAGGGCATTGTCGTGAAGCTGAT
AGGGCTTTTCAGTTGCACTCGGTTTGTTGTATGCTTGACGAGGAATTTTT
CGCGATTTGGAATCCTTTTTGGTTTGAGTAGCGGGGTGCCCCCATGACCT
CACCCGTTGATCTTCGTACCTTTTTGAGACTACAAGGGGGATTGTCATTT
GATAAGTTAGAGCTGACTGTTTCTGTCGCCACAGTTTCTTCAGTTGTAAA
GACGGTACGCTGGAAATTTGAGTCCATCAATCAAACCATAGCTGCAACGA
TGCTCCGGACGGCATAATCTCTTAAATGCTCAGGGTAAATTTCCAACACG
GTTTTTTGTATCTCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig133:543492..545456-

>mRNA_F-serratus_M_contig133.2464.1 ID=mRNA_F-serratus_M_contig133.2464.1|Name=mRNA_F-serratus_M_contig133.2464.1|organism=Fucus serratus male|type=CDS|length=876bp|location=Sequence derived from alignment at F-serratus_M_contig133:543492..545456- (Fucus serratus male)
ATGCACGCGGGTTCACGTCAAGTAAAGTACGCCCCGAGTAGTACACGTAC
AGGTCTCCCGTCGGATGGTAACATGATGACTACGCTAGAAAATAATGGTG
TTGAGTCTACTCTCACAAATCTCCTACATTTATTGTGTGTGATCCAGGCA
ATGGTCGCAGCGGCATCAGAATCCGAGCAACGGATTCGCGGCTGGCGACA
TGGACTTATTCCCTTTGCAAAGGACGCCAATGGCAACTTTCTGATGCACG
CGGGTTCACGTCAAGTAAAGTACGCCCCGAGTAGTACACGTACAGGTCTC
CCGTCGGATGGTAACATGATGACTACGCTAGAAAATAATGGTGTTGAGTC
TACTCTCACAAATCTCCTACATTTATTGTGTGTGATCCAGGCAATGGTCG
CAGCGGCATCAGAATCCGAGCAACGGATTCGCGGCTGGCGACATGGACTT
ATTCCCTTTGCAAAGGACGCCAATGGCAACTTTCTGGTCGCGGATACGAA
TGCGCGAGGATGCCCGGTCGAGGAGTGGGACGCCGAAGGCGAGGTCAGCA
CCGTGTCCAAGACCTTTTCGCTCTTTTTGGAATGCTACAGAAACAATCTT
TTGTCTGGCCGTTGTGAGTATGTGGATGGCATCGGGATAATCGAAAAAAT
TGACAATGCTAGCACTCGCCGCGGGAAGTAAGTCGCGGATACGAATGCGC
GAGGATGCCCGGTCGAGGAGTGGGACGCCGAAGGCGAGGTCAGCACCGTG
TCCAAGACCTTTTCGCTCTTTTTGGAATGCTACAGAAACAATCTTTTGTC
TGGCCGTTGTGAGTATGTGGATGGCATCGGGATAATCGAAAAAATTGACA
ATGCTAGCACTCGCCGCGGGAAGTAA
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