mRNA_F-serratus_M_contig133.2461.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig133.2461.1
Unique NamemRNA_F-serratus_M_contig133.2461.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig133.2461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig133contigF-serratus_M_contig133:504172..504855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size586
Cds size450
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig133.2461.1prot_F-serratus_M_contig133.2461.1Fucus serratus malepolypeptideF-serratus_M_contig133 504172..504719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929297.9664657-CDS-F-serratus_M_contig133:504171..5044971622929297.9664657-CDS-F-serratus_M_contig133:504171..504497Fucus serratus maleCDSF-serratus_M_contig133 504172..504497 +
1690962788.6163177-CDS-F-serratus_M_contig133:504171..5044971690962788.6163177-CDS-F-serratus_M_contig133:504171..504497Fucus serratus maleCDSF-serratus_M_contig133 504172..504497 +
1622929297.9828033-CDS-F-serratus_M_contig133:504595..5047191622929297.9828033-CDS-F-serratus_M_contig133:504595..504719Fucus serratus maleCDSF-serratus_M_contig133 504596..504719 +
1690962788.6292453-CDS-F-serratus_M_contig133:504595..5047191690962788.6292453-CDS-F-serratus_M_contig133:504595..504719Fucus serratus maleCDSF-serratus_M_contig133 504596..504719 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929298.0021544-UTR-F-serratus_M_contig133:504719..5048551622929298.0021544-UTR-F-serratus_M_contig133:504719..504855Fucus serratus maleUTRF-serratus_M_contig133 504720..504855 +
1690962788.6379716-UTR-F-serratus_M_contig133:504719..5048551690962788.6379716-UTR-F-serratus_M_contig133:504719..504855Fucus serratus maleUTRF-serratus_M_contig133 504720..504855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig133.2461.1

>prot_F-serratus_M_contig133.2461.1 ID=prot_F-serratus_M_contig133.2461.1|Name=mRNA_F-serratus_M_contig133.2461.1|organism=Fucus serratus male|type=polypeptide|length=150bp
QGATGKVNVTISPDAPASATVAEPAAAFNVTVTAASGRSTAIRREQVRAR
RAQKERDAQRIEEEQLREKAERCKIRRKRKEELMAGKARIAGEDTCVDGG
RGVSHQGSTGFDPTAIFSSTARTTSSKAARARRRYRRQSGFCYLPTSNR*
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mRNA from alignment at F-serratus_M_contig133:504172..504855+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig133.2461.1 ID=mRNA_F-serratus_M_contig133.2461.1|Name=mRNA_F-serratus_M_contig133.2461.1|organism=Fucus serratus male|type=mRNA|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig133:504172..504855+ (Fucus serratus male)
CAGGGAGCAACTGGAAAGGTGAACGTCACTATTTCACCTGATGCGCCCGC
ATCAGCGACTGTGGCAGAACCTGCGGCAGCTTTCAACGTGACTGTCACAG
CAGCTTCTGGTCGATCGACGGCCATTCGTAGGGAGCAAGTAAGAGCCCGG
AGAGCGCAGAAGGAGAGAGATGCGCAACGTATCGAGGAAGAGCAATTGCG
AGAGAAGGCCGAGCGTTGCAAGATTCGACGAAAGCGTAAGGAGGAATTGA
TGGCTGGTAAGGCACGCATCGCGGGCGAAGATACTTGTGTCGATGGAGGA
CGAGGCGTCTCGCATCAGGGATCGACGTCTAAGCTTGCGGGCCTTGAAGC
CGAGCAGCAGCAGCAACAGCAATCAGAAAAAGAATCGAGAGCCCAGCAGT
TCAAAAGCAAGCGAGCTAAGCTAGGGGATTCGACCCCACCGCAATCTTCT
CGTCGACGGCAAGAACAACGAGCTCAAAAGCCGCGCGGGCACGGCGGAGA
TATCGGAGACAGTCGGGTTTTTGCTACCTACCCACCAGTAATCGCTAGTG
CAAGCATGGTCACAGAACGGAAAGCTGCTGGAAAAGGTGGGAGCAAACGC
TCACTGACCGGAGCGGCGCCTGAGGCAAGGCCGGCGACGTGCGGGGAACA
CGACCAAGCGACAGTGGAAGAGGTTCCAATGCCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig133:504172..504855+

>mRNA_F-serratus_M_contig133.2461.1 ID=mRNA_F-serratus_M_contig133.2461.1|Name=mRNA_F-serratus_M_contig133.2461.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig133:504172..504855+ (Fucus serratus male)
CAGGGAGCAACTGGAAAGGTGAACGTCACTATTTCACCTGATGCGCCCGC
ATCAGCGACTGTGGCAGAACCTGCGGCAGCTTTCAACGTGACTGTCACAG
CAGCTTCTGGTCGATCGACGGCCATTCGTAGGGAGCAAGTAAGAGCCCGG
AGAGCGCAGAAGGAGAGAGATGCGCAACGTATCGAGGAAGAGCAATTGCG
AGAGAAGGCCGAGCGTTGCAAGATTCGACGAAAGCGTAAGGAGGAATTGA
TGGCTGGTAAGGCACGCATCGCGGGCGAAGATACTTGTGTCGATGGAGGA
CGAGGCGTCTCGCATCAGGGATCGACCAGGGAGCAACTGGAAAGGTGAAC
GTCACTATTTCACCTGATGCGCCCGCATCAGCGACTGTGGCAGAACCTGC
GGCAGCTTTCAACGTGACTGTCACAGCAGCTTCTGGTCGATCGACGGCCA
TTCGTAGGGAGCAAGTAAGAGCCCGGAGAGCGCAGAAGGAGAGAGATGCG
CAACGTATCGAGGAAGAGCAATTGCGAGAGAAGGCCGAGCGTTGCAAGAT
TCGACGAAAGCGTAAGGAGGAATTGATGGCTGGTAAGGCACGCATCGCGG
GCGAAGATACTTGTGTCGATGGAGGACGAGGCGTCTCGCATCAGGGATCG
ACGGGATTCGACCCCACCGCAATCTTCTCGTCGACGGCAAGAACAACGAG
CTCAAAAGCCGCGCGGGCACGGCGGAGATATCGGAGACAGTCGGGTTTTT
GCTACCTACCCACCAGTAATCGCTAGGGGATTCGACCCCACCGCAATCTT
CTCGTCGACGGCAAGAACAACGAGCTCAAAAGCCGCGCGGGCACGGCGGA
GATATCGGAGACAGTCGGGTTTTTGCTACCTACCCACCAGTAATCGCTAG
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