mRNA_F-serratus_M_contig133.2448.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig133.2448.1
Unique Name	mRNA_F-serratus_M_contig133.2448.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig133.2448.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig133.2448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig133	contig	F-serratus_M_contig133:286353..288782 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	2431
Cds size	2430
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929298.3504567-CDS-F-serratus_M_contig133:286352..288782	1622929298.3504567-CDS-F-serratus_M_contig133:286352..288782	Fucus serratus male	CDS	F-serratus_M_contig133 286353..288782 +
1690962788.7407954-CDS-F-serratus_M_contig133:286352..288782	1690962788.7407954-CDS-F-serratus_M_contig133:286352..288782	Fucus serratus male	CDS	F-serratus_M_contig133 286353..288782 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig133.2448.1	prot_F-serratus_M_contig133.2448.1	Fucus serratus male	polypeptide	F-serratus_M_contig133 286353..288782 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig133:286353..288782+
coding sequence from alignment at F-serratus_M_contig133:286353..288782+

protein sequence of mRNA_F-serratus_M_contig133.2448.1

>prot_F-serratus_M_contig133.2448.1 ID=prot_F-serratus_M_contig133.2448.1|Name=mRNA_F-serratus_M_contig133.2448.1|organism=Fucus serratus male|type=polypeptide|length=810bp
NERREGKEAEETEDEGEEEENPGGDHSKENKYRLLQQQLLNKEEEEGKEE
REDREEHEKEGDEEEDEEGNEDGKKKDPGADDSDEDEPFVDVGESTGAPT
IEETDEGNIICCQHKEDSVLIGRKNEWEHEASADYYGEGPVNKQDNILAT
ASFEDELRSAMPPFKVDVWTNEINVDNRASGITNFDGSDAGLERAALVVG
DTESGERSARAAGCDPEVSPTRSVASDTALTHQQHLDEEQENEGREGKEA
EETEDEGEEEEYPGVDNSGNNENRLLHQQLLNKEKEKEEEEEEEEQEDKA
MEDEGNEEENLGRDHSGGTDYRLLQQQLPNKEEEEGGEESEETEKDEKGG
DEKEGEEEKEEEKDEEGRNEDGKEEYLGADDSEEDEPFVDGEVNAGAPTI
QDIDERGVIHCQHEKDSVLDDQKEGTHEVSADHYGEAPVSKQDNMLVTAS
FEDELRSAMPSLEVDVWTHEMNSDNRASGMANIDVSDAGLERAALVVGGT
EGRERCTRAAGYDPVVSPTRSVATDDTLLHQQDLDKVEEDDGREEQEGEE
KDLGGDHFEESKYRLLQQQLLNKEEEEGKEDGEEGDEDEKEEDEEEGNEN
GKEEDPGADDSEEGEPFADGGENAGAPMIEEVDERYVIRCQHEQDSVLNY
QNGEREHKASADHYGKGPVSRQDNTLVTASFEDELRSAMPPSKVDVWTNE
INDDNRASGTTNIDGNDVGLERAALVVGDTEGRERSARAAGCDPEISPTR
SMATDTTLSHQQHLNEEQENEGRERKKVEETEDEGEEKEDPGGDHSKENK
DRLLQQQLLN

mRNA from alignment at F-serratus_M_contig133:286353..288782+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig133.2448.1 ID=mRNA_F-serratus_M_contig133.2448.1|Name=mRNA_F-serratus_M_contig133.2448.1|organism=Fucus serratus male|type=mRNA|length=2430bp|location=Sequence derived from alignment at F-serratus_M_contig133:286353..288782+ (Fucus serratus male)
AACGAGCGGCGAGAGGGAAAGGAAGCCGAGGAGACGGAAGATGAAGGCGA
GGAGGAAGAAAATCCCGGTGGTGACCACTCTAAAGAAAACAAATATCGGT
TATTGCAGCAACAGCTCCTGAACAAAGAAGAGGAAGAAGGGAAGGAGGAA
AGGGAAGATAGAGAGGAACATGAGAAGGAGGGAGATGAAGAGGAAGATGA
GGAGGGAAATGAAGACGGAAAGAAAAAAGATCCCGGTGCCGATGACTCCG
ACGAAGACGAACCTTTCGTAGATGTTGGGGAAAGTACTGGCGCCCCTACG
ATAGAAGAGACCGATGAAGGAAATATTATATGCTGCCAGCATAAAGAAGA
CAGTGTTCTCATAGGTCGAAAGAACGAGTGGGAGCACGAGGCGAGTGCCG
ACTATTACGGCGAGGGTCCAGTAAATAAGCAAGACAACATACTAGCCACA
GCTTCATTTGAAGATGAGCTTAGGTCTGCGATGCCTCCTTTTAAAGTTGA
TGTCTGGACAAACGAAATAAACGTGGACAACAGGGCATCAGGGATCACGA
ACTTCGATGGAAGCGACGCGGGCTTAGAGCGCGCAGCGCTTGTTGTAGGT
GACACTGAAAGCGGGGAAAGGTCTGCAAGAGCTGCGGGGTGTGATCCTGA
GGTAAGCCCCACGCGCTCCGTGGCATCAGATACGGCCTTGACGCATCAAC
AGCACCTGGATGAAGAACAGGAGAATGAGGGGCGAGAGGGAAAGGAAGCC
GAGGAGACGGAAGATGAAGGCGAGGAGGAAGAATATCCCGGCGTTGACAA
CTCTGGAAACAATGAAAATCGGTTATTGCACCAACAGCTCCTGAACAAGG
AAAAAGAAAAAGAGGAGGAGGAGGAAGAAGAGGAACAGGAAGACAAGGCG
ATGGAAGATGAAGGCAATGAGGAAGAAAATCTAGGCCGTGACCACTCGGG
AGGAACTGATTATCGGTTATTGCAGCAACAGCTCCCGAACAAGGAAGAGG
AAGAAGGAGGGGAGGAAAGCGAAGAGACAGAGAAGGACGAGAAGGGTGGA
GATGAAAAGGAAGGCGAGGAGGAAAAAGAGGAAGAGAAAGACGAGGAGGG
GAGGAATGAAGACGGAAAGGAAGAATATCTCGGCGCCGATGATTCCGAAG
AAGACGAACCTTTCGTAGACGGTGAGGTAAATGCTGGCGCCCCTACTATA
CAAGATATCGATGAAAGAGGTGTTATACATTGCCAGCATGAAAAAGACAG
TGTTCTTGATGATCAAAAGGAAGGGACGCACGAGGTGAGTGCCGACCATT
ACGGCGAGGCTCCAGTAAGTAAGCAAGACAACATGCTAGTAACAGCTTCC
TTCGAAGATGAGCTTAGGTCTGCGATGCCTTCTTTAGAAGTAGATGTCTG
GACACATGAAATGAACAGCGACAACAGGGCATCAGGGATGGCGAACATCG
ATGTGAGCGACGCGGGCTTAGAGCGCGCAGCACTTGTTGTAGGTGGCACT
GAGGGTAGAGAAAGATGTACAAGAGCTGCGGGGTATGATCCTGTGGTAAG
CCCCACGCGTTCCGTGGCAACAGATGATACCTTGTTGCATCAACAGGACC
TGGATAAAGTAGAGGAGGACGACGGGCGAGAGGAACAGGAAGGCGAGGAG
AAAGATCTCGGCGGTGACCACTTTGAAGAAAGCAAATATCGGTTATTGCA
GCAACAGCTCCTGAACAAAGAAGAGGAAGAAGGGAAGGAGGATGGGGAAG
AGGGAGATGAAGACGAGAAGGAGGAAGATGAGGAGGAGGGAAATGAAAAC
GGAAAGGAAGAAGATCCCGGCGCCGATGACTCCGAAGAAGGCGAACCTTT
CGCAGATGGTGGGGAAAATGCTGGCGCCCCTATGATAGAAGAGGTCGACG
AAAGATATGTTATACGCTGCCAGCATGAACAAGACAGTGTTCTCAACTAT
CAAAATGGCGAGAGGGAGCACAAGGCGAGTGCCGACCACTACGGCAAGGG
TCCAGTAAGTAGGCAAGACAACACGCTAGTCACAGCTTCATTCGAAGATG
AGCTTAGGTCCGCGATGCCTCCTTCTAAAGTTGACGTCTGGACAAACGAA
ATAAACGACGACAACAGGGCATCAGGGACCACGAACATCGATGGAAACGA
TGTGGGCTTGGAGCGCGCAGCACTTGTTGTAGGTGATACTGAGGGCCGGG
AAAGGTCTGCAAGAGCTGCGGGGTGTGATCCTGAGATAAGCCCCACGCGC
TCCATGGCAACAGATACGACCCTGTCGCATCAACAGCACCTGAATGAAGA
ACAGGAGAACGAGGGGCGAGAAAGAAAGAAAGTCGAGGAGACGGAGGATG
AAGGCGAGGAGAAGGAAGATCCCGGCGGTGACCACTCTAAAGAAAACAAA
GATCGGTTATTGCAGCAACAGCTCCTGAAC

Coding sequence (CDS) from alignment at F-serratus_M_contig133:286353..288782+

>mRNA_F-serratus_M_contig133.2448.1 ID=mRNA_F-serratus_M_contig133.2448.1|Name=mRNA_F-serratus_M_contig133.2448.1|organism=Fucus serratus male|type=CDS|length=4860bp|location=Sequence derived from alignment at F-serratus_M_contig133:286353..288782+ (Fucus serratus male)
AACGAGCGGCGAGAGGGAAAGGAAGCCGAGGAGACGGAAGATGAAGGCGA
GGAGGAAGAAAATCCCGGTGGTGACCACTCTAAAGAAAACAAATATCGGT
TATTGCAGCAACAGCTCCTGAACAAAGAAGAGGAAGAAGGGAAGGAGGAA
AGGGAAGATAGAGAGGAACATGAGAAGGAGGGAGATGAAGAGGAAGATGA
GGAGGGAAATGAAGACGGAAAGAAAAAAGATCCCGGTGCCGATGACTCCG
ACGAAGACGAACCTTTCGTAGATGTTGGGGAAAGTACTGGCGCCCCTACG
ATAGAAGAGACCGATGAAGGAAATATTATATGCTGCCAGCATAAAGAAGA
CAGTGTTCTCATAGGTCGAAAGAACGAGTGGGAGCACGAGGCGAGTGCCG
ACTATTACGGCGAGGGTCCAGTAAATAAGCAAGACAACATACTAGCCACA
GCTTCATTTGAAGATGAGCTTAGGTCTGCGATGCCTCCTTTTAAAGTTGA
TGTCTGGACAAACGAAATAAACGTGGACAACAGGGCATCAGGGATCACGA
ACTTCGATGGAAGCGACGCGGGCTTAGAGCGCGCAGCGCTTGTTGTAGGT
GACACTGAAAGCGGGGAAAGGTCTGCAAGAGCTGCGGGGTGTGATCCTGA
GGTAAGCCCCACGCGCTCCGTGGCATCAGATACGGCCTTGACGCATCAAC
AGCACCTGGATGAAGAACAGGAGAATGAGGGGCGAGAGGGAAAGGAAGCC
GAGGAGACGGAAGATGAAGGCGAGGAGGAAGAATATCCCGGCGTTGACAA
CTCTGGAAACAATGAAAATCGGTTATTGCACCAACAGCTCCTGAACAAGG
AAAAAGAAAAAGAGGAGGAGGAGGAAGAAGAGGAACAGGAAGACAAGGCG
ATGGAAGATGAAGGCAATGAGGAAGAAAATCTAGGCCGTGACCACTCGGG
AGGAACTGATTATCGGTTATTGCAGCAACAGCTCCCGAACAAGGAAGAGG
AAGAAGGAGGGGAGGAAAGCGAAGAGACAGAGAAGGACGAGAAGGGTGGA
GATGAAAAGGAAGGCGAGGAGGAAAAAGAGGAAGAGAAAGACGAGGAGGG
GAGGAATGAAGACGGAAAGGAAGAATATCTCGGCGCCGATGATTCCGAAG
AAGACGAACCTTTCGTAGACGGTGAGGTAAATGCTGGCGCCCCTACTATA
CAAGATATCGATGAAAGAGGTGTTATACATTGCCAGCATGAAAAAGACAG
TGTTCTTGATGATCAAAAGGAAGGGACGCACGAGGTGAGTGCCGACCATT
ACGGCGAGGCTCCAGTAAGTAAGCAAGACAACATGCTAGTAACAGCTTCC
TTCGAAGATGAGCTTAGGTCTGCGATGCCTTCTTTAGAAGTAGATGTCTG
GACACATGAAATGAACAGCGACAACAGGGCATCAGGGATGGCGAACATCG
ATGTGAGCGACGCGGGCTTAGAGCGCGCAGCACTTGTTGTAGGTGGCACT
GAGGGTAGAGAAAGATGTACAAGAGCTGCGGGGTATGATCCTGTGGTAAG
CCCCACGCGTTCCGTGGCAACAGATGATACCTTGTTGCATCAACAGGACC
TGGATAAAGTAGAGGAGGACGACGGGCGAGAGGAACAGGAAGGCGAGGAG
AAAGATCTCGGCGGTGACCACTTTGAAGAAAGCAAATATCGGTTATTGCA
GCAACAGCTCCTGAACAAAGAAGAGGAAGAAGGGAAGGAGGATGGGGAAG
AGGGAGATGAAGACGAGAAGGAGGAAGATGAGGAGGAGGGAAATGAAAAC
GGAAAGGAAGAAGATCCCGGCGCCGATGACTCCGAAGAAGGCGAACCTTT
CGCAGATGGTGGGGAAAATGCTGGCGCCCCTATGATAGAAGAGGTCGACG
AAAGATATGTTATACGCTGCCAGCATGAACAAGACAGTGTTCTCAACTAT
CAAAATGGCGAGAGGGAGCACAAGGCGAGTGCCGACCACTACGGCAAGGG
TCCAGTAAGTAGGCAAGACAACACGCTAGTCACAGCTTCATTCGAAGATG
AGCTTAGGTCCGCGATGCCTCCTTCTAAAGTTGACGTCTGGACAAACGAA
ATAAACGACGACAACAGGGCATCAGGGACCACGAACATCGATGGAAACGA
TGTGGGCTTGGAGCGCGCAGCACTTGTTGTAGGTGATACTGAGGGCCGGG
AAAGGTCTGCAAGAGCTGCGGGGTGTGATCCTGAGATAAGCCCCACGCGC
TCCATGGCAACAGATACGACCCTGTCGCATCAACAGCACCTGAATGAAGA
ACAGGAGAACGAGGGGCGAGAAAGAAAGAAAGTCGAGGAGACGGAGGATG
AAGGCGAGGAGAAGGAAGATCCCGGCGGTGACCACTCTAAAGAAAACAAA
GATCGGTTATTGCAGCAACAGCTCCTGAACAACGAGCGGCGAGAGGGAAA
GGAAGCCGAGGAGACGGAAGATGAAGGCGAGGAGGAAGAAAATCCCGGTG
GTGACCACTCTAAAGAAAACAAATATCGGTTATTGCAGCAACAGCTCCTG
AACAAAGAAGAGGAAGAAGGGAAGGAGGAAAGGGAAGATAGAGAGGAACA
TGAGAAGGAGGGAGATGAAGAGGAAGATGAGGAGGGAAATGAAGACGGAA
AGAAAAAAGATCCCGGTGCCGATGACTCCGACGAAGACGAACCTTTCGTA
GATGTTGGGGAAAGTACTGGCGCCCCTACGATAGAAGAGACCGATGAAGG
AAATATTATATGCTGCCAGCATAAAGAAGACAGTGTTCTCATAGGTCGAA
AGAACGAGTGGGAGCACGAGGCGAGTGCCGACTATTACGGCGAGGGTCCA
GTAAATAAGCAAGACAACATACTAGCCACAGCTTCATTTGAAGATGAGCT
TAGGTCTGCGATGCCTCCTTTTAAAGTTGATGTCTGGACAAACGAAATAA
ACGTGGACAACAGGGCATCAGGGATCACGAACTTCGATGGAAGCGACGCG
GGCTTAGAGCGCGCAGCGCTTGTTGTAGGTGACACTGAAAGCGGGGAAAG
GTCTGCAAGAGCTGCGGGGTGTGATCCTGAGGTAAGCCCCACGCGCTCCG
TGGCATCAGATACGGCCTTGACGCATCAACAGCACCTGGATGAAGAACAG
GAGAATGAGGGGCGAGAGGGAAAGGAAGCCGAGGAGACGGAAGATGAAGG
CGAGGAGGAAGAATATCCCGGCGTTGACAACTCTGGAAACAATGAAAATC
GGTTATTGCACCAACAGCTCCTGAACAAGGAAAAAGAAAAAGAGGAGGAG
GAGGAAGAAGAGGAACAGGAAGACAAGGCGATGGAAGATGAAGGCAATGA
GGAAGAAAATCTAGGCCGTGACCACTCGGGAGGAACTGATTATCGGTTAT
TGCAGCAACAGCTCCCGAACAAGGAAGAGGAAGAAGGAGGGGAGGAAAGC
GAAGAGACAGAGAAGGACGAGAAGGGTGGAGATGAAAAGGAAGGCGAGGA
GGAAAAAGAGGAAGAGAAAGACGAGGAGGGGAGGAATGAAGACGGAAAGG
AAGAATATCTCGGCGCCGATGATTCCGAAGAAGACGAACCTTTCGTAGAC
GGTGAGGTAAATGCTGGCGCCCCTACTATACAAGATATCGATGAAAGAGG
TGTTATACATTGCCAGCATGAAAAAGACAGTGTTCTTGATGATCAAAAGG
AAGGGACGCACGAGGTGAGTGCCGACCATTACGGCGAGGCTCCAGTAAGT
AAGCAAGACAACATGCTAGTAACAGCTTCCTTCGAAGATGAGCTTAGGTC
TGCGATGCCTTCTTTAGAAGTAGATGTCTGGACACATGAAATGAACAGCG
ACAACAGGGCATCAGGGATGGCGAACATCGATGTGAGCGACGCGGGCTTA
GAGCGCGCAGCACTTGTTGTAGGTGGCACTGAGGGTAGAGAAAGATGTAC
AAGAGCTGCGGGGTATGATCCTGTGGTAAGCCCCACGCGTTCCGTGGCAA
CAGATGATACCTTGTTGCATCAACAGGACCTGGATAAAGTAGAGGAGGAC
GACGGGCGAGAGGAACAGGAAGGCGAGGAGAAAGATCTCGGCGGTGACCA
CTTTGAAGAAAGCAAATATCGGTTATTGCAGCAACAGCTCCTGAACAAAG
AAGAGGAAGAAGGGAAGGAGGATGGGGAAGAGGGAGATGAAGACGAGAAG
GAGGAAGATGAGGAGGAGGGAAATGAAAACGGAAAGGAAGAAGATCCCGG
CGCCGATGACTCCGAAGAAGGCGAACCTTTCGCAGATGGTGGGGAAAATG
CTGGCGCCCCTATGATAGAAGAGGTCGACGAAAGATATGTTATACGCTGC
CAGCATGAACAAGACAGTGTTCTCAACTATCAAAATGGCGAGAGGGAGCA
CAAGGCGAGTGCCGACCACTACGGCAAGGGTCCAGTAAGTAGGCAAGACA
ACACGCTAGTCACAGCTTCATTCGAAGATGAGCTTAGGTCCGCGATGCCT
CCTTCTAAAGTTGACGTCTGGACAAACGAAATAAACGACGACAACAGGGC
ATCAGGGACCACGAACATCGATGGAAACGATGTGGGCTTGGAGCGCGCAG
CACTTGTTGTAGGTGATACTGAGGGCCGGGAAAGGTCTGCAAGAGCTGCG
GGGTGTGATCCTGAGATAAGCCCCACGCGCTCCATGGCAACAGATACGAC
CCTGTCGCATCAACAGCACCTGAATGAAGAACAGGAGAACGAGGGGCGAG
AAAGAAAGAAAGTCGAGGAGACGGAGGATGAAGGCGAGGAGAAGGAAGAT
CCCGGCGGTGACCACTCTAAAGAAAACAAAGATCGGTTATTGCAGCAACA
GCTCCTGAAC