mRNA_F-serratus_M_contig133.2447.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig133.2447.1
Unique NamemRNA_F-serratus_M_contig133.2447.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig133.2447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig133contigF-serratus_M_contig133:285825..286302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929298.2973995-CDS-F-serratus_M_contig133:285824..2863011622929298.2973995-CDS-F-serratus_M_contig133:285824..286301Fucus serratus maleCDSF-serratus_M_contig133 285825..286301 +
1690962788.7291074-CDS-F-serratus_M_contig133:285824..2863011690962788.7291074-CDS-F-serratus_M_contig133:285824..286301Fucus serratus maleCDSF-serratus_M_contig133 285825..286301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig133.2447.1prot_F-serratus_M_contig133.2447.1Fucus serratus malepolypeptideF-serratus_M_contig133 285825..286301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig133.2447.1

>prot_F-serratus_M_contig133.2447.1 ID=prot_F-serratus_M_contig133.2447.1|Name=mRNA_F-serratus_M_contig133.2447.1|organism=Fucus serratus male|type=polypeptide|length=159bp
DEEGVNEDGKEEDPGADDSEDESFVDGGENAGAPTIEDTDERDVIRCQHK
EDSVFNNQKDEGEHEASVDYYGEDPLSKQDNTLVTASFEDELRSAMPSSK
VEVWTNEMNSDNRASGMANIDVSDAGLEHASFVVGGTEGRERSARVAGWD
LEVSPTRSV
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mRNA from alignment at F-serratus_M_contig133:285825..286302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig133.2447.1 ID=mRNA_F-serratus_M_contig133.2447.1|Name=mRNA_F-serratus_M_contig133.2447.1|organism=Fucus serratus male|type=mRNA|length=478bp|location=Sequence derived from alignment at F-serratus_M_contig133:285825..286302+ (Fucus serratus male)
GACGAGGAGGGGGTAAATGAAGACGGGAAGGAAGAAGATCCCGGCGCCGA
TGATTCCGAAGACGAATCTTTCGTAGATGGTGGGGAAAATGCTGGCGCCC
CTACGATAGAAGATACCGATGAAAGAGATGTTATACGTTGCCAGCATAAA
GAAGATAGTGTTTTCAACAATCAAAAGGACGAAGGGGAGCACGAGGCGAG
TGTCGACTATTACGGCGAGGATCCACTAAGTAAGCAAGACAACACGCTAG
TCACAGCTTCATTTGAAGATGAGCTTAGGTCTGCGATGCCTTCTTCTAAA
GTCGAAGTCTGGACAAACGAAATGAACAGCGACAACAGGGCATCAGGGAT
GGCAAACATCGATGTGAGCGACGCGGGCTTGGAGCACGCATCATTTGTTG
TAGGTGGCACTGAGGGCAGGGAAAGATCTGCAAGGGTTGCGGGGTGGGAT
CTTGAGGTAAGCCCCACGCGCTCCGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig133:285825..286302+

>mRNA_F-serratus_M_contig133.2447.1 ID=mRNA_F-serratus_M_contig133.2447.1|Name=mRNA_F-serratus_M_contig133.2447.1|organism=Fucus serratus male|type=CDS|length=954bp|location=Sequence derived from alignment at F-serratus_M_contig133:285825..286302+ (Fucus serratus male)
GACGAGGAGGGGGTAAATGAAGACGGGAAGGAAGAAGATCCCGGCGCCGA
TGATTCCGAAGACGAATCTTTCGTAGATGGTGGGGAAAATGCTGGCGCCC
CTACGATAGAAGATACCGATGAAAGAGATGTTATACGTTGCCAGCATAAA
GAAGATAGTGTTTTCAACAATCAAAAGGACGAAGGGGAGCACGAGGCGAG
TGTCGACTATTACGGCGAGGATCCACTAAGTAAGCAAGACAACACGCTAG
TCACAGCTTCATTTGAAGATGAGCTTAGGTCTGCGATGCCTTCTTCTAAA
GTCGAAGTCTGGACAAACGAAATGAACAGCGACAACAGGGCATCAGGGAT
GGCAAACATCGATGTGAGCGACGCGGGCTTGGAGCACGCATCATTTGTTG
TAGGTGGCACTGAGGGCAGGGAAAGATCTGCAAGGGTTGCGGGGTGGGAT
CTTGAGGTAAGCCCCACGCGCTCCGTGGACGAGGAGGGGGTAAATGAAGA
CGGGAAGGAAGAAGATCCCGGCGCCGATGATTCCGAAGACGAATCTTTCG
TAGATGGTGGGGAAAATGCTGGCGCCCCTACGATAGAAGATACCGATGAA
AGAGATGTTATACGTTGCCAGCATAAAGAAGATAGTGTTTTCAACAATCA
AAAGGACGAAGGGGAGCACGAGGCGAGTGTCGACTATTACGGCGAGGATC
CACTAAGTAAGCAAGACAACACGCTAGTCACAGCTTCATTTGAAGATGAG
CTTAGGTCTGCGATGCCTTCTTCTAAAGTCGAAGTCTGGACAAACGAAAT
GAACAGCGACAACAGGGCATCAGGGATGGCAAACATCGATGTGAGCGACG
CGGGCTTGGAGCACGCATCATTTGTTGTAGGTGGCACTGAGGGCAGGGAA
AGATCTGCAAGGGTTGCGGGGTGGGATCTTGAGGTAAGCCCCACGCGCTC
CGTG
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