mRNA_F-serratus_M_contig1328.2438.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1328.2438.1
Unique NamemRNA_F-serratus_M_contig1328.2438.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1328.2438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1328contigF-serratus_M_contig1328:188724..190678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1305
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1328.2438.1prot_F-serratus_M_contig1328.2438.1Fucus serratus malepolypeptideF-serratus_M_contig1328 189925..190581 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929297.3391116-UTR-F-serratus_M_contig1328:188723..1892701622929297.3391116-UTR-F-serratus_M_contig1328:188723..189270Fucus serratus maleUTRF-serratus_M_contig1328 188724..189270 -
1690962788.3407743-UTR-F-serratus_M_contig1328:188723..1892701690962788.3407743-UTR-F-serratus_M_contig1328:188723..189270Fucus serratus maleUTRF-serratus_M_contig1328 188724..189270 -
1622929297.356683-UTR-F-serratus_M_contig1328:189920..1899241622929297.356683-UTR-F-serratus_M_contig1328:189920..189924Fucus serratus maleUTRF-serratus_M_contig1328 189921..189924 -
1690962788.3547704-UTR-F-serratus_M_contig1328:189920..1899241690962788.3547704-UTR-F-serratus_M_contig1328:189920..189924Fucus serratus maleUTRF-serratus_M_contig1328 189921..189924 -
1622929297.3863509-UTR-F-serratus_M_contig1328:190581..1906781622929297.3863509-UTR-F-serratus_M_contig1328:190581..190678Fucus serratus maleUTRF-serratus_M_contig1328 190582..190678 -
1690962788.383429-UTR-F-serratus_M_contig1328:190581..1906781690962788.383429-UTR-F-serratus_M_contig1328:190581..190678Fucus serratus maleUTRF-serratus_M_contig1328 190582..190678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929297.372548-CDS-F-serratus_M_contig1328:189924..1905811622929297.372548-CDS-F-serratus_M_contig1328:189924..190581Fucus serratus maleCDSF-serratus_M_contig1328 189925..190581 -
1690962788.369687-CDS-F-serratus_M_contig1328:189924..1905811690962788.369687-CDS-F-serratus_M_contig1328:189924..190581Fucus serratus maleCDSF-serratus_M_contig1328 189925..190581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1328.2438.1

>prot_F-serratus_M_contig1328.2438.1 ID=prot_F-serratus_M_contig1328.2438.1|Name=mRNA_F-serratus_M_contig1328.2438.1|organism=Fucus serratus male|type=polypeptide|length=219bp
MVDVYSRKCRTKSCGKRPLYGVAGTKIAEYCAQHAPGGMVDAKNRNQFRI
EGCGEILSYGVAGTKTAEYCSQHAPNGMVDTCSKKRRIEGCAKGPSFGVA
NPRTAEFCAQHGRLLYGVEGYSEGEADPHHSGKKTFGNILPNGAKHLTLH
PPATTSPPSEGSQASHKRVRYPESTSTASMGPISRESAEGARTMLDIDGQ
NSPGKQDASVMVKVQLSL*
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mRNA from alignment at F-serratus_M_contig1328:188724..190678-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1328.2438.1 ID=mRNA_F-serratus_M_contig1328.2438.1|Name=mRNA_F-serratus_M_contig1328.2438.1|organism=Fucus serratus male|type=mRNA|length=1955bp|location=Sequence derived from alignment at F-serratus_M_contig1328:188724..190678- (Fucus serratus male)
CAGAAAGTGCAGAACCGAAGGCTGCGACAAGTGGCCGTCGTATGGAGTTA
AAGGTTCGAAAACTGCGGAGTACTGTGCACAGCACGCACCGGGCGGGATG
GTCGACGTCTACAGCAGGAAGTGCAGAACCAAAAGCTGCGGCAAGCGACC
GTTGTATGGAGTGGCAGGTACGAAAATTGCGGAGTACTGTGCTCAGCACG
CACCGGGCGGAATGGTCGACGCCAAGAACAGGAATCAGTTCAGGATTGAA
GGCTGCGGCGAGATTCTGTCGTATGGAGTGGCAGGTACGAAAACGGCGGA
GTACTGCTCGCAGCACGCGCCGAACGGGATGGTCGACACCTGCAGCAAAA
AGCGCAGAATCGAGGGCTGCGCCAAGGGTCCGTCGTTTGGAGTGGCCAAC
CCAAGAACGGCGGAGTTCTGTGCACAGCACGGCAGACTATTATACGGTGT
CGAAGGATACAGTGAGGGAGAGGCTGACCCACATCATTCCGGGAAGAAAA
CCTTTGGTAACATACTTCCGAACGGCGCCAAACATCTAACCCTTCATCCT
CCTGCCACCACAAGCCCTCCGTCGGAAGGTAGTCAGGCCTCTCATAAGCG
AGTACGTTACCCAGAAAGTACATCCACGGCCTCTATGGGACCCATCTCGC
GAGAGTCGGCCGAAGGGGCGAGGACTATGCTGGATATTGACGGGCAAAAT
TCTCCCGGCAAACAAGATGCTTCTGTGATGGTAAAGGTGCAGCTCTCCCT
GTAGCCAGGTACACTATACGCGACCTCAACTTCTATCTGCTTGATAATAG
TTTTCATGCCCTTGCTCCTGTATTCCGCTGCATAATAGGACTGCCTTTTA
TGCGTAGCTTGATGAGAATGTTTTTCTTACCTTACGCATATCATGTGGTT
GTCTTTTGTTTGTTTCTTGTGTTGTTGTTTTTTGTATTTTTGATTCTTGT
TTCTTTACTTTTAATTTGTGTCTCTCTTGTGTCTCTTCCTGGCGACGATG
TCCTTTGCTGGCTATTTTCCTGCTCTTTTCCTTCTGTCTGCTTTCGCTGC
TTTTTTTCTCCGAATGTTTTATTTCCCGGTTTGGTTCTGTCTATTTTGTG
ACAATGGCTGGATTCGTAGGGGACCACGCAATGTGAGATTAACAACAACA
ACAACAACAAAGATAGTACACGATGATTCCGGCTACCGTAGCTTAATCGT
TGGCTTTCCCTCTGTTCAGATTGAATGTGTACCCCGTCTCGTTCATGAAT
CTCACGCTGGGTTTGATCGCAAGGCTGTGAGTTCAGCTCAAGGGCGCCTC
TTCCTGGACCCCCAAGACCTTGCAGCTCGCTCCACAGCTTTCACGAAACA
CGCACTAGTGCTCACCCCCAAGGCCTTGTTCTCCCATTCCCCCGTCTTTT
GAACTCAGGTACTGCGATCAAGAGCGTGGTGATTATATTTGTTCTACAGC
CACCGAGATGCTGATGGGTTTGGTGAGGGTCGTCCTACCTTCCGCACCTC
CGGAACTTTATTTTTCACTTCATATTATATGCATATACACTGTTTCATCC
TTTAGAAGTCGTGATGACATAGCGACAAAGAAGTATGGATGGGTAGCACC
AGGCCGCACGGCGATGCTACGGAGAATGATTCCCTGAACTCTTTGGCCAC
CCCGATTCCGATTTCGAGGGGGGCGCGCGTTTGTGTTTGGTAGAGTGGTC
GTCATGAATGCGTACTTATGTGACAATTTGTCAGCAGGCAACTATACGGT
ATGAAGTTCAGCTACGAATTAGGCTCACATTGTATGGAAAAGAAGTAATC
GATGGAGCATTACATGATTTCGCGATAGGGGCTGAATTTGTTGCAATTTA
ATTTGATCTTATAACTCGATACTGTTTTCATACTGTTTCCGTGTTGTTCT
TTTACATACCAATCGCTGATCACGTAAACCTGAGCTAATGTTGACTGTGA
CTGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1328:188724..190678-

>mRNA_F-serratus_M_contig1328.2438.1 ID=mRNA_F-serratus_M_contig1328.2438.1|Name=mRNA_F-serratus_M_contig1328.2438.1|organism=Fucus serratus male|type=CDS|length=1314bp|location=Sequence derived from alignment at F-serratus_M_contig1328:188724..190678- (Fucus serratus male)
ATGGTCGACGTCTACAGCAGGAAGTGCAGAACCAAAAGCTGCGGCAAGCG
ACCGTTGTATGGAGTGGCAGGTACGAAAATTGCGGAGTACTGTGCTCAGC
ACGCACCGGGCGGAATGGTCGACGCCAAGAACAGGAATCAGTTCAGGATT
GAAGGCTGCGGCGAGATTCTGTCGTATGGAGTGGCAGGTACGAAAACGGC
GGAGTACTGCTCGCAGCACGCGCCGAACGGGATGGTCGACACCTGCAGCA
AAAAGCGCAGAATCGAGGGCTGCGCCAAGGGTCCGTCGTTTGGAGTGGCC
AACCCAAGAACGGCGGAGTTCTGTGCACAGCACGGCAGACTATTATACGG
TGTCGAAGGATACAGTGAGGGAGAGGCTGACCCACATCATTCCGGGAAGA
AAACCTTTGGTAACATACTTCCGAACGGCGCCAAACATCTAACCCTTCAT
CCTCCTGCCACCACAAGCCCTCCGTCGGAAGGTAGTCAGGCCTCTCATAA
GCGAGTACGTTACCCAGAAAGTACATCCACGGCCTCTATGGGACCCATCT
CGCGAGAGTCGGCCGAAGGGGCGAGGACTATGCTGGATATTGACGGGCAA
AATTCTCCCGGCAAACAAGATGCTTCTGTGATGGTAAAGGTGCAGCTCTC
CCTGTAGATGGTCGACGTCTACAGCAGGAAGTGCAGAACCAAAAGCTGCG
GCAAGCGACCGTTGTATGGAGTGGCAGGTACGAAAATTGCGGAGTACTGT
GCTCAGCACGCACCGGGCGGAATGGTCGACGCCAAGAACAGGAATCAGTT
CAGGATTGAAGGCTGCGGCGAGATTCTGTCGTATGGAGTGGCAGGTACGA
AAACGGCGGAGTACTGCTCGCAGCACGCGCCGAACGGGATGGTCGACACC
TGCAGCAAAAAGCGCAGAATCGAGGGCTGCGCCAAGGGTCCGTCGTTTGG
AGTGGCCAACCCAAGAACGGCGGAGTTCTGTGCACAGCACGGCAGACTAT
TATACGGTGTCGAAGGATACAGTGAGGGAGAGGCTGACCCACATCATTCC
GGGAAGAAAACCTTTGGTAACATACTTCCGAACGGCGCCAAACATCTAAC
CCTTCATCCTCCTGCCACCACAAGCCCTCCGTCGGAAGGTAGTCAGGCCT
CTCATAAGCGAGTACGTTACCCAGAAAGTACATCCACGGCCTCTATGGGA
CCCATCTCGCGAGAGTCGGCCGAAGGGGCGAGGACTATGCTGGATATTGA
CGGGCAAAATTCTCCCGGCAAACAAGATGCTTCTGTGATGGTAAAGGTGC
AGCTCTCCCTGTAG
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