mRNA_F-serratus_M_contig1328.2435.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1328.2435.1
Unique NamemRNA_F-serratus_M_contig1328.2435.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1328.2435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1328contigF-serratus_M_contig1328:37891..38495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929297.1468601-CDS-F-serratus_M_contig1328:37890..379301622929297.1468601-CDS-F-serratus_M_contig1328:37890..37930Fucus serratus maleCDSF-serratus_M_contig1328 37891..37930 +
1690962788.2993748-CDS-F-serratus_M_contig1328:37890..379301690962788.2993748-CDS-F-serratus_M_contig1328:37890..37930Fucus serratus maleCDSF-serratus_M_contig1328 37891..37930 +
1622929297.163951-CDS-F-serratus_M_contig1328:38373..384951622929297.163951-CDS-F-serratus_M_contig1328:38373..38495Fucus serratus maleCDSF-serratus_M_contig1328 38374..38495 +
1690962788.308704-CDS-F-serratus_M_contig1328:38373..384951690962788.308704-CDS-F-serratus_M_contig1328:38373..38495Fucus serratus maleCDSF-serratus_M_contig1328 38374..38495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1328.2435.1prot_F-serratus_M_contig1328.2435.1Fucus serratus malepolypeptideF-serratus_M_contig1328 37891..38495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1328.2435.1

>prot_F-serratus_M_contig1328.2435.1 ID=prot_F-serratus_M_contig1328.2435.1|Name=mRNA_F-serratus_M_contig1328.2435.1|organism=Fucus serratus male|type=polypeptide|length=54bp
RVAARTLRTRQLLGNRERRQAAVLREAQQNAMYKDGYLRAFDPARPLHLE
SWVQ
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mRNA from alignment at F-serratus_M_contig1328:37891..38495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1328.2435.1 ID=mRNA_F-serratus_M_contig1328.2435.1|Name=mRNA_F-serratus_M_contig1328.2435.1|organism=Fucus serratus male|type=mRNA|length=605bp|location=Sequence derived from alignment at F-serratus_M_contig1328:37891..38495+ (Fucus serratus male)
CGGGTGGCTGCTCGGACACTACGGACTCGCCAGCTCCTAGGTAAAAAAAA
ATACAGTTGCAAACATTTTGCACTTCGTTACCAGCATGCATTGCCCAGCC
CTACGCACTACAGACCACGACATTGTGCCAAAAGGATTATCGAGGATTTG
CAGCAGTAGCACAACAGAGCACGCAATTGTCTTTACATATACGATCGACA
ATGTACAGGATTAGGGTCCATGCTAGAAACTGTGTGCTCGAAACTGTTCA
GAAGGAGAGCGCGCAGGTCTACCATCTACACGAATGTACACCAGTAGTTA
TTCTACACATGCTATGAAGATTGTACACCACTAGGGTCTGTGCTTAACAC
ACTGTGTTCGAAATTGTTCATGATAAGAGCGTGAAGGTCTATCGCCTGCA
GGTGTACAAACTCGTTGTCAAACAATCAGCACAAATACACTCATCGATAC
TATCCTGTTTTTCAAAACTATTCTGTTTCACAGGAAATCGTGAACGCCGA
CAGGCTGCGGTACTGCGCGAAGCACAGCAAAATGCTATGTATAAGGACGG
TTATCTGCGCGCCTTCGACCCCGCAAGACCTCTGCATTTAGAGTCGTGGG
TGCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1328:37891..38495+

>mRNA_F-serratus_M_contig1328.2435.1 ID=mRNA_F-serratus_M_contig1328.2435.1|Name=mRNA_F-serratus_M_contig1328.2435.1|organism=Fucus serratus male|type=CDS|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig1328:37891..38495+ (Fucus serratus male)
CGGGTGGCTGCTCGGACACTACGGACTCGCCAGCTCCTAGCGGGTGGCTG
CTCGGACACTACGGACTCGCCAGCTCCTAGGAAATCGTGAACGCCGACAG
GCTGCGGTACTGCGCGAAGCACAGCAAAATGCTATGTATAAGGACGGTTA
TCTGCGCGCCTTCGACCCCGCAAGACCTCTGCATTTAGAGTCGTGGGTGC
AGGAAATCGTGAACGCCGACAGGCTGCGGTACTGCGCGAAGCACAGCAAA
ATGCTATGTATAAGGACGGTTATCTGCGCGCCTTCGACCCCGCAAGACCT
CTGCATTTAGAGTCGTGGGTGCAG
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