mRNA_F-serratus_M_contig1328.2434.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1328.2434.1
Unique NamemRNA_F-serratus_M_contig1328.2434.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1328.2434.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.210e-9
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  364 ELEEDGFPLPGFWRRRDSPKLSQATGEIIEEAAMPHLALLARLYHGVEATSCQAE 528
            +L+ DGF + G+W RR +  +S  TG++   A MP+LA +ARLY G+EATSCQAE
Sbjct:  522 QLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAE 576
[Close]
BLAST of mRNA_F-serratus_M_contig1328.2434.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.270e-9
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  364 ELEEDGFPLPGFWRRRDSPKLSQATGEIIEEAAMPHLALLARLYHGVEATSCQAE 528
            +L+ DGF + G+W RR +  +S  TG++   A MP+LA +ARLY G+EATSCQAE
Sbjct:  717 QLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAE 771
[Close]
BLAST of mRNA_F-serratus_M_contig1328.2434.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.190e-9
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  370 EEDGFPLPGFWRRRDSPKLSQATGEIIEEAAMPHLALLARLYHGVEATSCQAE 528
            EE  F L  FW+RR  P+    TGE+  E  +PHLAL+ARL+HG+E+TSCQAE
Sbjct:  382 EEYDFSLLEFWQRRSKPRTCAETGEV--EPGLPHLALIARLFHGIESTSCQAE 432
[Close]
BLAST of mRNA_F-serratus_M_contig1328.2434.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.960e-9
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  370 EEDGFPLPGFWRRRDSPKLSQATGEIIEEAAMPHLALLARLYHGVEATSCQAE 528
            EE  F L  FW+RR  P+    TGE+  E  +PHLAL+ARL+HG+E+TSCQAE
Sbjct:  710 EEYDFSLLEFWQRRSKPRTCAETGEV--EPGLPHLALIARLFHGIESTSCQAE 760
[Close]
BLAST of mRNA_F-serratus_M_contig1328.2434.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.250e-7
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  364 ELEEDGFPLPGFWRRRDSPKLSQATGEIIEEAAMPHLALLARLYHGVEATSCQAE 528
            ++E D F + GFW RR +  +   TG +   A MP+LA +ARL+ G+EA+SCQAE
Sbjct:  140 QVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAE 194
[Close]
BLAST of mRNA_F-serratus_M_contig1328.2434.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.300e-7
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  364 ELEEDGFPLPGFWRRRDSPKLSQATGEIIEEAAMPHLALLARLYHGVEATSCQAE 528
            ++E D F + GFW RR +  +   TG +   A MP+LA +ARL+ G+EA+SCQAE
Sbjct:  705 QVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAE 759
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1328.2434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE1.210e-952.73Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.270e-952.73Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KAN7_9PHAE7.190e-956.60Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE7.960e-956.60Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJT6_9PHAE1.250e-747.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE2.300e-747.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1328contigF-serratus_M_contig1328:21768..22296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size529
Cds size450
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929297.2363303-UTR-F-serratus_M_contig1328:21767..218461622929297.2363303-UTR-F-serratus_M_contig1328:21767..21846Fucus serratus maleUTRF-serratus_M_contig1328 21768..21846 +
1690962788.3181572-UTR-F-serratus_M_contig1328:21767..218461690962788.3181572-UTR-F-serratus_M_contig1328:21767..21846Fucus serratus maleUTRF-serratus_M_contig1328 21768..21846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929297.2667606-CDS-F-serratus_M_contig1328:21846..222961622929297.2667606-CDS-F-serratus_M_contig1328:21846..22296Fucus serratus maleCDSF-serratus_M_contig1328 21847..22296 +
1690962788.328431-CDS-F-serratus_M_contig1328:21846..222961690962788.328431-CDS-F-serratus_M_contig1328:21846..22296Fucus serratus maleCDSF-serratus_M_contig1328 21847..22296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1328.2434.1prot_F-serratus_M_contig1328.2434.1Fucus serratus malepolypeptideF-serratus_M_contig1328 21847..22296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1328.2434.1

>prot_F-serratus_M_contig1328.2434.1 ID=prot_F-serratus_M_contig1328.2434.1|Name=mRNA_F-serratus_M_contig1328.2434.1|organism=Fucus serratus male|type=polypeptide|length=150bp
MIGMCVGLVHEALLSQRFKTDQNRREARDSLVATGPLAKKPRMLSVMEQR
RANRLAAAGSVGAAGDEAESGSRPSITHKVRVLQELTSYVAEKGWSWKKT
DFPCRGFGGEGTPLSFLKRQARLSRKRLCRISHSSHAFTTGSRPRAARLS
back to top

mRNA from alignment at F-serratus_M_contig1328:21768..22296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1328.2434.1 ID=mRNA_F-serratus_M_contig1328.2434.1|Name=mRNA_F-serratus_M_contig1328.2434.1|organism=Fucus serratus male|type=mRNA|length=529bp|location=Sequence derived from alignment at F-serratus_M_contig1328:21768..22296+ (Fucus serratus male)
AGGAGCATAGATATAAACTTTATATTTTGGCGACAAATCCCGACTGTGGT
ATGCATAGGAGTATTGTACTTGTCAGGGGATGATTGGTATGTGTGTAGGG
TTGGTGCATGAAGCACTTCTGAGCCAAAGGTTCAAGACAGACCAAAACCG
TCGAGAGGCTCGGGACAGCCTGGTGGCAACGGGGCCACTGGCAAAGAAGC
CACGGATGCTCTCCGTTATGGAGCAGCGACGCGCCAACAGACTGGCTGCC
GCTGGGAGTGTGGGTGCTGCTGGAGATGAGGCAGAGAGCGGGTCGAGGCC
AAGCATCACGCACAAGGTCCGTGTTCTCCAAGAGCTGACGAGTTATGTAG
CAGAAAAGGGGTGGAGCTGGAAGAAGACGGATTTCCCTTGCCGGGGTTTT
GGCGGAGAAGGGACTCCCCTAAGCTTTCTCAAGCGACAGGCGAGATTATC
GAGGAAGCGGCTATGCCGCATCTCGCACTCCTCGCACGCCTTTACCACGG
GGTCGAGGCCACGAGCTGCCAGGCTGAGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1328:21768..22296+

>mRNA_F-serratus_M_contig1328.2434.1 ID=mRNA_F-serratus_M_contig1328.2434.1|Name=mRNA_F-serratus_M_contig1328.2434.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig1328:21768..22296+ (Fucus serratus male)
ATGATTGGTATGTGTGTAGGGTTGGTGCATGAAGCACTTCTGAGCCAAAG
GTTCAAGACAGACCAAAACCGTCGAGAGGCTCGGGACAGCCTGGTGGCAA
CGGGGCCACTGGCAAAGAAGCCACGGATGCTCTCCGTTATGGAGCAGCGA
CGCGCCAACAGACTGGCTGCCGCTGGGAGTGTGGGTGCTGCTGGAGATGA
GGCAGAGAGCGGGTCGAGGCCAAGCATCACGCACAAGGTCCGTGTTCTCC
AAGAGCTGACGAGTTATGTAGCAGAAAAGGGGTGGAGCTGGAAGAAGACG
GATTTCCCTTGCCGGGGTTTTGGCGGAGAAGGGACTCCCCTAAGCTTTCT
CAAGCGACAGGCGAGATTATCGAGGAAGCGGCTATGCCGCATCTCGCACT
CCTCGCACGCCTTTACCACGGGGTCGAGGCCACGAGCTGCCAGGCTGAGC
ATGATTGGTATGTGTGTAGGGTTGGTGCATGAAGCACTTCTGAGCCAAAG
GTTCAAGACAGACCAAAACCGTCGAGAGGCTCGGGACAGCCTGGTGGCAA
CGGGGCCACTGGCAAAGAAGCCACGGATGCTCTCCGTTATGGAGCAGCGA
CGCGCCAACAGACTGGCTGCCGCTGGGAGTGTGGGTGCTGCTGGAGATGA
GGCAGAGAGCGGGTCGAGGCCAAGCATCACGCACAAGGTCCGTGTTCTCC
AAGAGCTGACGAGTTATGTAGCAGAAAAGGGGTGGAGCTGGAAGAAGACG
GATTTCCCTTGCCGGGGTTTTGGCGGAGAAGGGACTCCCCTAAGCTTTCT
CAAGCGACAGGCGAGATTATCGAGGAAGCGGCTATGCCGCATCTCGCACT
CCTCGCACGCCTTTACCACGGGGTCGAGGCCACGAGCTGCCAGGCTGAGC
back to top