mRNA_F-serratus_M_contig1327.2430.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1327.2430.1 vs. uniprot
Match: A0A6H5JD62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD62_9PHAE) HSP 1 Score: 211 bits (538), Expect = 1.490e-55 Identity = 342/671 (50.97%), Postives = 385/671 (57.38%), Query Frame = 3
Query: 150 NLLLLVVAAPMRADAGPENLEGSYPNNNVIPLEFHDAELDAGGAAAGKTAPTSASSRGYSAESEIHHYAQSGDVEKVRRCLLGGISKVDEVDELGCTAVHLAGAMGHADVVRLLVEEHGASXXXXXXXXXXXXXXXXXXXXXXXXXXLLRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSARDANGMQAIDMIGAKRRIPQGVRFDLVNTLERYLLGDFTFARAPPPSSTKSLRQTWKGRADATRVSFATT------PEGLG----------------------------------------TRVSSFSRGAPSWYDGFPNGSSTEGDWRGERQGSFAGVGVPQRSVDRRDDDFFRGEESKQGVEEAGGRSTQWAVGAAVAGRLEEMRARELGASLRAKVQENEAMKRYLDSVKEEMRMLQQKLLEQSSARSNKATPFNGLDIGPNGSIAEKVAHTMYGEDGIGVHLRQARGAEAAAAAGVVPVSGTESSAFAFRAGRGIAGGDFASSSLPAGVAISAPSHGSSKTFCGSGVVV-------EGRPSTEAA-VGGGSGFSDYGD---QPAG--PGAPTVSMSQLLMAKRAQLQSLLD 1985
N L A A A P LEG+ P V A + P+S + ESEIHHYAQ+GDVE+VRRCLL G +KVDEVDELGCT VHLAGAMGH +VV+LLVEEH A+ XXXXXXXXXXXXXXXXXXXXXLLRLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PSA+DA+G QA+DM+GA RRIPQG++FD++NTLERY +G++ ARAP SST+SLRQ W+ R A+T P G G +R S SR DGF S G GE G + G R R F G+ G GGRS +W VGAAVAGRLE MRARELGASLRAKVQENEAMKRY++SV I +K EDG AG V SG + GG+F+S + AG A++AP HG ++ G+ V + PS EA VGG G S QP G GA VS+SQLL AKRAQLQS+LD
Sbjct: 24 NELAPATAGETTAAAAPAGLEGAPPAQQVAAXGXXXXXXXXX---ATRVPPSSLEVK--VEESEIHHYAQAGDVEEVRRCLLAGFNKVDEVDELGCTPVHLAGAMGHTNVVKLLVEEHRAAVDARDXXXXXXXXXXXXXXXXXXXXXLLRLGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPSAKDAHGKQAVDMVGAGRRIPQGLKFDIINTLERYQMGEYGIARAPL-SSTRSLRQIWRDRDSGESTPRASTARAGSLPSGAGGEAGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIYSSRGGSISRKGSMSLDGFSTASMGAG---GEGGGPLSVRGAAMRHSSR---GFSEGDGRGNG----GGRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESV--------------------------------TMCIRDKR------EDGD---------------AGAVAASGPK-------------GGEFSSVTAAAG-ALAAPGHGGAQREVGTAEAVAVAVTAAQVPPSVEATMVGGAGGISSEPQKQQQPVGVEAGAVRVSISQLLDAKRAQLQSILD 611
BLAST of mRNA_F-serratus_M_contig1327.2430.1 vs. uniprot
Match: D8LLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ4_ECTSI) HSP 1 Score: 150 bits (379), Expect = 2.490e-34 Identity = 181/490 (36.94%), Postives = 218/490 (44.49%), Query Frame = 3
Query: 909 PSARDANGMQAIDMIGAKRRIPQGVRFDLVNTLERYLLGDFTFARAPPPSSTKSLRQTWKGRADATRVSFATTPE----------GLG-------------------------------------TRVSSFSRGAPSWYDGFPNGSSTEGDWRGERQGSFAGVGVPQRSVDRRDDDFFRGEESKQGVEEAGG--RSTQWAVGAAVAGRLEEMRARELGASLRAKVQENEAMKRYLDSVKEEMRMLQQKLLEQSSAR--------------------------SNKATPFNGLDIGPNG-SIAEKVAHTM-------YGEDGIGV-------------HLRQAR--------GAEAAAA---AGVVPVSGTESSAFA-----FRAG--------RGIAGGDFASSSLPAGVAISAPSHGSSKTFCGSGVVV-------EGRPSTEAAVGGGSGFSDYGD--QPAG--PGAPTVSMSQLLMAKRAQLQSLLD 1985
PSA+DA+G QAIDM+GA RRIPQG+RFD++NTLERY +G++ ARAP SST+SLRQ W+ R A+T G G +R S SR DGF S G GE G + G R R F G+ RS +W VGAAVAGRLE MRARELGASLRAKVQENEAMKRY++SV EEMR LQQK+ +QS + A P G SIAEKVA + + G G LR A G EAAAA A VV V G + A A RAG G+ GG+F+S + AG A +AP +G ++ G+ V + PS EA + G QP G GA VS+SQLL AKRAQLQS+LD
Sbjct: 150 PSAKDAHGKQAIDMVGAGRRIPQGLRFDIINTLERYQMGEYAIARAPL-SSTRSLRQMWRDRDSGESTPRASTARAGSLPSSAVGGAGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIYSSRGGSISRKGSMSLDGFSTASMGAG---GEGGGPLSVRGAAMRHSSR---GFSEGDXXXXXXXXXXXXXRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVTEEMRALQQKISQQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAPLVTSRPGEEQLSIAEKVARGIGAARQDPAAQPGAGAGEGLLDGRRNPNPSLRGATALGADGGLGTEAAAAVPKARVVQVDGGSAVAEAPAMTMQRAGGDAGAVAAAGLKGGEFSSFTAAAG-APAAPGYGDAQGEVGTAEAVAVAVTAAQVPPSVEATMVGXXXXXXXXXXXQPVGVEAGAVRVSISQLLDAKRAQLQSILD 631 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1327.2430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1327.2430.1 >prot_F-serratus_M_contig1327.2430.1 ID=prot_F-serratus_M_contig1327.2430.1|Name=mRNA_F-serratus_M_contig1327.2430.1|organism=Fucus serratus male|type=polypeptide|length=610bp MRADAGPENLEGSYPNNNVIPLEFHDAELDAGGAAAGKTAPTSASSRGYSback to top mRNA from alignment at F-serratus_M_contig1327:147330..176378+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1327.2430.1 ID=mRNA_F-serratus_M_contig1327.2430.1|Name=mRNA_F-serratus_M_contig1327.2430.1|organism=Fucus serratus male|type=mRNA|length=29049bp|location=Sequence derived from alignment at F-serratus_M_contig1327:147330..176378+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1327:147330..176378+ >mRNA_F-serratus_M_contig1327.2430.1 ID=mRNA_F-serratus_M_contig1327.2430.1|Name=mRNA_F-serratus_M_contig1327.2430.1|organism=Fucus serratus male|type=CDS|length=3660bp|location=Sequence derived from alignment at F-serratus_M_contig1327:147330..176378+ (Fucus serratus male)back to top |