mRNA_F-serratus_M_contig1321.2413.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1321.2413.1
Unique NamemRNA_F-serratus_M_contig1321.2413.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1321.2413.1 vs. uniprot
Match: A0A6H5JXP3_9PHAE (GH5 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP3_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.770e-43
Identity = 61/87 (70.11%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:   16 DPTTFRCELDPKLTKENLPFFIPDIEGTWGAACGRNRGVFVLKPADGHTYNCGKLPEAWGVSDVSDITDLNKTTPATALKAYGNLVE 276
            DP +FRC+LDPKLT+++LPFFIPDI+GTWG+ACGRNRGVFV++P DGHTY+CG +P  WGVS+ +DI +L KT PA ALKAYGN V+
Sbjct:    2 DPGSFRCKLDPKLTEKDLPFFIPDIQGTWGSACGRNRGVFVVEPPDGHTYDCGNMPADWGVSNAADIANLTKTKPAVALKAYGNFVD 88
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BLAST of mRNA_F-serratus_M_contig1321.2413.1 vs. uniprot
Match: D8LEF5_ECTSI (Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF5_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.080e-39
Identity = 60/87 (68.97%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:   16 DPTTFRCELDPKLTKENLPFFIPDIEGTWGAACGRNRGVFVLKPADGHTYNCGKLPEAWGVSDVSDITDLNKTTPATALKAYGNLVE 276
            DP +FRC+LDPKLT+++LPFFIPDI+GTWG+ACGRNRGVFV++P DGHTY+CG +P  WGVS+ +DI +L KT P+ ALKAYGN V+
Sbjct:    2 DPGSFRCKLDPKLTEKDLPFFIPDIQGTWGSACGRNRGVFVVQPPDGHTYDCGNMPADWGVSNAADIANLTKTQPSVALKAYGNFVD 88
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BLAST of mRNA_F-serratus_M_contig1321.2413.1 vs. uniprot
Match: A0A836CCQ8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCQ8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.500e-25
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    1 GNAGFDPTTFRCELDPKLTKENLPFFIPDIEGTWGAACGRNRGVFVLKPADGHTYNCGKLPEAWG-VSDVSDITDLNKTTPATALKAYGNLVE 276
            GNAG  P    C LDPKLT E LPFFIPDI   WG+ CGRNRGVFV  P DGHTY+C  LPE WG  ++V+++ +        A++   N+V+
Sbjct:   50 GNAGIGPKNQHCVLDPKLTPETLPFFIPDIRQAWGSLCGRNRGVFVTDPPDGHTYSCNDLPERWGPAANVNEVLNQTLVPANVAVETIENIVK 142
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BLAST of mRNA_F-serratus_M_contig1321.2413.1 vs. uniprot
Match: A0A4D9D2R7_9STRA (Cellulase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2R7_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.800e-19
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:   34 CELDPKLTKENLPFFIPDIEGTWGAACGRNRGVFVLKPADGHTYNCGKLPEAWGVSDVSDITDLNKTTPATALKAY 261
            C LDPK+T   +  F  +I   WG ACGRNRGVF+L+PADG TY+CG LPE+WG+ +V  +         TAL  Y
Sbjct:    3 CRLDPKVTASTILDFQTEIGELWGGACGRNRGVFILEPADGKTYDCGNLPESWGIPNVGSLLSAQPAKAVTALTNY 78
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1321.2413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JXP3_9PHAE1.770e-4370.11GH5 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP... [more]
D8LEF5_ECTSI2.080e-3968.97Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocar... [more]
A0A836CCQ8_9STRA1.500e-2551.61Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A4D9D2R7_9STRA1.800e-1950.00Cellulase domain-containing protein n=2 Tax=Monodo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1321contigF-serratus_M_contig1321:254909..256354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue8.8e-33
Seed eggNOG ortholog2880.D8LEF5
Hectar predicted targeting categoryother localisation
EggNOG OGs2CIRD@1,2S847@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929290.708952-CDS-F-serratus_M_contig1321:254910..2550201622929290.708952-CDS-F-serratus_M_contig1321:254910..255020Fucus serratus maleCDSF-serratus_M_contig1321 254911..255020 -
1690962785.9074445-CDS-F-serratus_M_contig1321:254910..2550201690962785.9074445-CDS-F-serratus_M_contig1321:254910..255020Fucus serratus maleCDSF-serratus_M_contig1321 254911..255020 -
1622929290.724599-CDS-F-serratus_M_contig1321:256188..2563541622929290.724599-CDS-F-serratus_M_contig1321:256188..256354Fucus serratus maleCDSF-serratus_M_contig1321 256189..256354 -
1690962785.9183402-CDS-F-serratus_M_contig1321:256188..2563541690962785.9183402-CDS-F-serratus_M_contig1321:256188..256354Fucus serratus maleCDSF-serratus_M_contig1321 256189..256354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1321.2413.1prot_F-serratus_M_contig1321.2413.1Fucus serratus malepolypeptideF-serratus_M_contig1321 254911..256354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1321.2413.1

>prot_F-serratus_M_contig1321.2413.1 ID=prot_F-serratus_M_contig1321.2413.1|Name=mRNA_F-serratus_M_contig1321.2413.1|organism=Fucus serratus male|type=polypeptide|length=92bp
GNAGFDPTTFRCELDPKLTKENLPFFIPDIEGTWGAACGRNRGVFVLKPA
DGHTYNCGKLPEAWGVSDVSDITDLNKTTPATALKAYGNLVE
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mRNA from alignment at F-serratus_M_contig1321:254909..256354-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1321.2413.1 ID=mRNA_F-serratus_M_contig1321.2413.1|Name=mRNA_F-serratus_M_contig1321.2413.1|organism=Fucus serratus male|type=mRNA|length=1446bp|location=Sequence derived from alignment at F-serratus_M_contig1321:254909..256354- (Fucus serratus male)
GGCAATGCAGGCTTCGATCCCACGACGTTCCGCTGCGAGCTTGACCCCAA
GCTCACGAAGGAGAATCTTCCCTTCTTCATCCCGGATATCGAGGGCACCT
GGGGCGCGGCATGCGGTCGCAATCGTGGTGTCTTCGTTCTCAAACCCGCG
GACGGCCACACCTATAGTGGGTACAGTATTGCAGCTATTAATAGTAGATG
ATGTAGGCAGGCGTAGCAGCGCTTGTACGACACGAGTGTACCTTTCTTTG
TGTCTGGCAGGCAATGTCGTCTTCCCCTCGTGCTCCCCTTGAGGTGTGCT
ATAGCTCCCTTCCATTTTTATTGTATTATAGCTCTATTATTGGTGTCACG
AAGCTGTCGGAAGGTTGTTACGGTATTATTGTGTTGTGCCTTGCAGAGGT
AATGGGAGATATAATTTGAGTTAAGTATGCTCGAAGGTGTAAAGAACAGA
TGCGATGTGACCCCGATGGGACAATTTTGGTCAAACGAATATCCGACATA
TGGAGACGCTGCAAACGTATGAACCTTTCATGGGGTAAACTTGACTTTTA
TGTTCAACTGGATTATTTCCATACTTGTTACAATTGTAAAACAAAGAGAT
GAGATATTAACTACAGAACAATAATAATAGTACTACTTTGTCATTGGCGT
CGCGCTTTTATGCCCTTCTTTTTTATCCCTTTCTTCGTGGGATATTTTCC
GTTTCTTCAAGTACAACGCATGATACATCTCTCATAGGTTCTGAGTCTCG
CTATATTTTCCTTCGTACGACTTAGACTACTATCGACAGCAAGATCATGA
CAGCCATGGCCAGAACGTACTCCTTATATACTGGGTTTATGAAGTACTTC
GAATAACAGAGATAATGATATTATATTATACCAATGTGCATGTCTGTTTT
TGTTATTAAGTTGCGAGTAACCGTGCAATCTAGCCCTGTCATCATAGTCT
ATGCTACTCGCGTTGGTCCTCTCAAGGGGGAATCGATGATAGTTGCTGTC
TAATTAGACGCGACACAGGGGATATACTCTCCTTATAGTTTTCATTCTTC
AAGCCCTCAGCGTCTTGCGCTTCTTTCTCTTTTCCCTAATTATTATCTAC
ATATATATCCTCGGTCGGCACCTACTAAAGTAGTGCGTTTGTTTGTGTGT
GCGTGTTTCAATTTTCTCGATACAGTATCTTCGCGGTATGCCTCTTACTA
CACATTGGAAAGCTGTCGTCTACATATAGCTTCACACTGAGCTATATACT
GTACGATGCAGCAGGTGGTCGTGCATGTAAAAGCATTGGGGGGGCGTGGT
TCCTTCTCTTTGTCGGCCTTTCTCTTCTTGCCAGACTGCGGGAAATTGCC
GGAGGCGTGGGGGGTGAGCGACGTGTCCGACATCACCGACCTCAACAAAA
CCACGCCGGCGACCGCCCTCAAGGCTTATGGAAACCTAGTGGAGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1321:254909..256354-

>mRNA_F-serratus_M_contig1321.2413.1 ID=mRNA_F-serratus_M_contig1321.2413.1|Name=mRNA_F-serratus_M_contig1321.2413.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig1321:254909..256354- (Fucus serratus male)
GGCAATGCAGGCTTCGATCCCACGACGTTCCGCTGCGAGCTTGACCCCAA
GCTCACGAAGGAGAATCTTCCCTTCTTCATCCCGGATATCGAGGGCACCT
GGGGCGCGGCATGCGGTCGCAATCGTGGTGTCTTCGTTCTCAAACCCGCG
GACGGCCACACCTATAGGCAATGCAGGCTTCGATCCCACGACGTTCCGCT
GCGAGCTTGACCCCAAGCTCACGAAGGAGAATCTTCCCTTCTTCATCCCG
GATATCGAGGGCACCTGGGGCGCGGCATGCGGTCGCAATCGTGGTGTCTT
CGTTCTCAAACCCGCGGACGGCCACACCTATAACTGCGGGAAATTGCCGG
AGGCGTGGGGGGTGAGCGACGTGTCCGACATCACCGACCTCAACAAAACC
ACGCCGGCGACCGCCCTCAAGGCTTATGGAAACCTAGTGGAGACTGCGGG
AAATTGCCGGAGGCGTGGGGGGTGAGCGACGTGTCCGACATCACCGACCT
CAACAAAACCACGCCGGCGACCGCCCTCAAGGCTTATGGAAACCTAGTGG
AG
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