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Homology
BLAST of mRNA_F-serratus_M_contig1321.2409.1 vs. uniprot
Match: D7G8D6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D6_ECTSI) HSP 1 Score: 154 bits (389), Expect = 9.540e-42 Identity = 75/122 (61.48%), Postives = 99/122 (81.15%), Query Frame = 2
Query: 359 QPKVPKFRVPAAFVSPAALCLIAGTIWFFAMDSTSKEDAEATVQKEFPHVVRTSHEVDDRMKEFFRRVNNNDPREEERMRNLLNKGKGANYDAKRHHATSKDIQNFGFVPESSSPAIAAGSK 724
+P+VP+FRVPAA VSPA+L L+ G +++F++D S+++ + + KEFP VVR HEVDDRMKEFF+RVNNNDPREEERMR+LLNKGKG++Y AKR HAT+KDI+ FGF+ S PA + S+
Sbjct: 3 EPRVPRFRVPAALVSPASLFLVGGIVYYFSLDKPSEDELNSNIGKEFPDVVRGRHEVDDRMKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHATTKDIEEFGFI---SKPAGTSSSQ 121
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-19_004060.1 |
| Exons | 4 |
| Model size | 1221 |
| Cds size | 513 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929290.0445912-UTR-F-serratus_M_contig1321:153683..153734 | 1622929290.0445912-UTR-F-serratus_M_contig1321:153683..153734 | Fucus serratus male | UTR | F-serratus_M_contig1321 153684..153734 + |
| 1690962785.5302448-UTR-F-serratus_M_contig1321:153683..153734 | 1690962785.5302448-UTR-F-serratus_M_contig1321:153683..153734 | Fucus serratus male | UTR | F-serratus_M_contig1321 153684..153734 + |
| 1622929290.0575445-UTR-F-serratus_M_contig1321:157867..158165 | 1622929290.0575445-UTR-F-serratus_M_contig1321:157867..158165 | Fucus serratus male | UTR | F-serratus_M_contig1321 157868..158165 + |
| 1690962785.543506-UTR-F-serratus_M_contig1321:157867..158165 | 1690962785.543506-UTR-F-serratus_M_contig1321:157867..158165 | Fucus serratus male | UTR | F-serratus_M_contig1321 157868..158165 + |
| 1622929290.1202474-UTR-F-serratus_M_contig1321:160495..160854 | 1622929290.1202474-UTR-F-serratus_M_contig1321:160495..160854 | Fucus serratus male | UTR | F-serratus_M_contig1321 160496..160854 + |
| 1690962785.5873559-UTR-F-serratus_M_contig1321:160495..160854 | 1690962785.5873559-UTR-F-serratus_M_contig1321:160495..160854 | Fucus serratus male | UTR | F-serratus_M_contig1321 160496..160854 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929290.0806015-CDS-F-serratus_M_contig1321:158165..158321 | 1622929290.0806015-CDS-F-serratus_M_contig1321:158165..158321 | Fucus serratus male | CDS | F-serratus_M_contig1321 158166..158321 + |
| 1690962785.5520532-CDS-F-serratus_M_contig1321:158165..158321 | 1690962785.5520532-CDS-F-serratus_M_contig1321:158165..158321 | Fucus serratus male | CDS | F-serratus_M_contig1321 158166..158321 + |
| 1622929290.095417-CDS-F-serratus_M_contig1321:159032..159110 | 1622929290.095417-CDS-F-serratus_M_contig1321:159032..159110 | Fucus serratus male | CDS | F-serratus_M_contig1321 159033..159110 + |
| 1690962785.5648952-CDS-F-serratus_M_contig1321:159032..159110 | 1690962785.5648952-CDS-F-serratus_M_contig1321:159032..159110 | Fucus serratus male | CDS | F-serratus_M_contig1321 159033..159110 + |
| 1622929290.109692-CDS-F-serratus_M_contig1321:160216..160495 | 1622929290.109692-CDS-F-serratus_M_contig1321:160216..160495 | Fucus serratus male | CDS | F-serratus_M_contig1321 160217..160495 + |
| 1690962785.5774007-CDS-F-serratus_M_contig1321:160216..160495 | 1690962785.5774007-CDS-F-serratus_M_contig1321:160216..160495 | Fucus serratus male | CDS | F-serratus_M_contig1321 160217..160495 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1321.2409.1 >prot_F-serratus_M_contig1321.2409.1 ID=prot_F-serratus_M_contig1321.2409.1|Name=mRNA_F-serratus_M_contig1321.2409.1|organism=Fucus serratus male|type=polypeptide|length=171bp
MSEQPKVPKFRVPAAFVSPAALCLIAGTIWFFAMDSTSKEDAEATVQKEF PHVVRTSHEVDDRMKEFFRRVNNNDPREEERMRNLLNKGKGANYDAKRHH ATSKDIQNFGFVPESSSPAIAAGSKKVATAAETKSRSTAAESARGNDGAG APDTGSGMGERKPGRKGWFW* back to topmRNA from alignment at F-serratus_M_contig1321:153684..160854+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1321.2409.1 ID=mRNA_F-serratus_M_contig1321.2409.1|Name=mRNA_F-serratus_M_contig1321.2409.1|organism=Fucus serratus male|type=mRNA|length=7171bp|location=Sequence derived from alignment at F-serratus_M_contig1321:153684..160854+ (Fucus serratus male) GCACTAATCAGCTAGCGCAGTAGATTTAGGCTTGGAAGACAACACTGGGA
GGTGAGATCGTGTCTCTGGGTGTAGGATAAAGTTGCTAATGGATCATGTA
AGTGAGCCGAAGAAAAATATAATGCAGTTTGTGAATTTTGGTGCTGATCT
CTAGTGTTACATATTTCTCTTATCGGCATGCGACGTACAGACTCTATTAA
TTAGTAATATCCAGTACTTCTCCAGAAGGACTTCAATACGCAGAGGGTTT
TGGGCCTTAGTCATCGAGCGGCACTCGGATTATGCGTGCGAGTCGGTTGG
CAGCATTATGTTGTCGTTGTGCACAAGGTTGGATGTATTTTGTATCTGTG
AGTACGCGATCAGGCCATGTCATAGCCGCTCGTGCTGACTGGTCGCCCAA
ACAGGCGGCGGGCTTTCGTCGGCATGTGCGTACTTACATCCAACACGGGC
TGTTATAATAGTATAAGAGCGAACTATGCTGCACAGCAAGCACACTTTAA
AACACGCGTTTGCAGTTCGTTTCATATCCTACAACCTCGTCAAGCTACCC
CCCCCCCCTAGCGCTGCACTTCAAACGTTCTGGGGAGGAACCTGGCGCTT
GATCGAATTCTGGGTGATGTCCACAAACAGCAATGAAACGTTGCAATGAA
GTGAGATGTACTTGGCGAAGATCAGACATGTCGAGTGCTTCTTGATTGCG
TCCACCGCTGTAAGGCAACGACTCGTGCAAAACAGCACTATCTATTGATA
CTAACTATAGTACGATCATTAAGTAAGTGTATTCGCCCCGGCAGCTCAGA
GGTAACCTCGTAACCTACTGACGCGTTGGGACGTGAGTTCGAATCCCGTT
AAACGGTATTCTAAAAAATAGAAAAATAAAAGTAAAAATGCCGAACAAGT
GGAGAACGATTAAGTCGTTTTAGTACACAAAATTCGACTTCACGGTCGAC
GAGGGAAAGGAACGGCTGGATCCTTCTCGCGATAAAAATAAAGGCACGCA
CCGCAGAAAGAAGGTGGATGAGAAGTCGTGTGTGACCCCGGCTGGTATGT
CCAACGAACCTGATGTCCAGAACAAATGGGAAGAAAACACATACCTGGTA
CATATACACGCACACACACACACACACACACACACACGTAATAAGTACCA
GGTATCATTGATCCCCCCTCGGGAGGATCAATGCGAGTGGCATAGAATGA
CTAGGATGACAGGGCCGGATTGCGTGGTTATGTGCAATTTAATAAATACA
CACACACACACATGTATCGTCAGTACTTTCAGGAAAGTACGGATCAACCG
AGAATGGTTTCCAATTCTGCTCGTGGTCAGCTGAACGGGGAAAATGCCGC
TCGCGCCTGAGAATTTGGTCTCACCGCGAGAAGGGTTCGGTCTTCCCATT
CCGCGTAAGCCTGCTCATTCTCCCCACCCAGGCTGGATCAAAATCTGGTG
CGTGATCACGAGTTTCCTCGCGCTTTCCGCTACGGCGTCCATATATATAC
CAACCGCCATCGATTTACTCCTGAGTGCTGTATATCGGGTCACGCACTTG
CAGACCGATGGCGTTCACTGCCGAGATACTCTGCTATAAGTGATGACCAT
TAAAAGGGCATGCACCGCAGAAGGAAGGTGGATGACATATCCTGTGTGAC
CTTCCTCCTGTGTGACCTCGGCTGGTACATCCAACGAACTTGACCTCCAG
AGTAAATGGGAAGAAAACACACACAAAACACATACATACAAACATACTGC
CTCAAGGCAGTTCTAGTAATGGATACTATTAATAGTTTGGGTTGGAGGTC
GAGCTGTGTAACCCCGAGAGTCCTACTTGTTCGCAGTTTCCTGGGGTACA
CACCCCTGAAGAGGACCAACACCACCACATTCATATCATAGTCCATGCCG
TCCGATGAAACCAGGTGGAGCCCGTGTCAAGCATGTATAGCTCATCGCAC
GAAGAAGCTGTGTCAATCTCAGGTCGAGATCAGTTCAGAAAAAAACTGAA
CGCAGCTAAACCTCCCGAGCAATCAAAAGGCTTACCCTGGTAGGTGGGAA
CATTGGCTGCCAGTTGTCGCATTATGGTCGGTGGTCGTGGTGGAACGCCC
TGTTGTAAAAACAAGCGTCTGTAATTTTCCAATGTTGGAAGGCATCCAAA
AAGACTCCATTCGAAGAGCATAAAATACTGTGAAGACCTTTTCCCAACCT
ATCGCGAACTTTGGAATATTAATATTTCAAGATGGAAACTGAAAAACGAA
AGTGTCGTTAAGACCTGCCTTTCGACTGTATTTAGTACATAGAAGGACCA
GGACGTCCCTGGTACATGACCGATTTTGGGAGGGGGGTGCTGTCACAATT
ATCCTCAAGAGTTAGTTCAATAATTAACCCCAAACTATTTAAGTCTCCTG
ATCCCTTAAGGCGCCCGTCCCGTGTAGAACACCGAGCACTGTTGTTTGCA
AAGTAGACAACAGTACAACAGTAGCAGCAGCCGTGTCAGTCGAAGCTTCT
ATGGAGCAAGATAAAACCAGTTGGCAGACTCCAATTTTTCCAACCTCTAA
CATATTAATTTTAATATTAATAGTTGGTTTTGCAATCCGAGTAATGCATC
AGTGCTGCCGGGTTGCAATAATGTGGAGGCGGTGGTCGGATTGGGGGTAG
TTTAAAAAATCAAAAAGGGATGGCATCTCCTAATAGACCCGGACTGCAGC
AGAAGCTGCACACTGGAGTTACCTGACAGCCGACCGGACCGCGGAGGCAC
GGAGACGTCACAGGTCCCGACGTAAGGATAACAATTTCGTTGTGTTTTTT
TGTTAGTCTAAGCTACCGTTGGTTAGAGAGTCATTTTTCCTACCTTCCCG
CCGCCTGTACAACGCGTTCTTACTCGGGACTGAGACCACACCTTAATTTT
GAAACACAAGTACCCGATCGGCAGGACACATATCCCGAGAGACCATTTTC
GTAGAAGACACTATGCACTATGTTCTTCGTCGAGGTTGAGTCGGCAGCTG
TTTCCGTGGTACTGCGACATCTCTGTCGGTCATCACAAAATGGTGTGTGC
GTATGATCATCGTACGTACCTGGAATCTTACTTTAAATTCAAGACAAGAG
ATGTTTTGGAAAAGGTGTATGTGTTTGTACAAATTCTGGTCTGAAGCCGT
TTTCAGCCAACATATGGTTATTCGTAAGGGAGGTGAAGGTAACGATTCGT
CGCGGACAAGCTCCTATCCGCGACGAACCTTTCGCACACTGCCGCCAACA
TACCCGGAAAATGTGTGCACACCTTTGTCGTATCGAACGACGGGCGTGCG
AGGGACTGCTTGACGACCGAAGTCGAGATATTTTAGTACATACACGAGGC
AATGGGGTACGTACCTGATCTCGCCGCATTTTTTGTATTCATGAACTTTT
GCCGTGGATACTTTTTTTTTATATTGAGCCACAGAAACGATTTCGACTCA
CGAAACTCGGAGCACAAACGCAACACAGAGTGATACAGCAGTTCGTACCT
CCTTCTGCATCGAAGCAGTCTGAGATAACGTGCGCGAGGGACAAATGTGT
GGTTTCCTATAGTATTAGTCAGGCGGTTTCCGGCAGCACTGGCATGCGGG
GCATCTTCTCTTCTCTCGTCTTCTGTACAGATGTTGTTCGAAATGTGGTG
TCACTCAGACTGGGTGTGTACAGAGTAGCTCTAGAATTGATGCGGTAGGA
TTTCCAAAGGGTCTTACCACCAAGCGATTGGACCGGCCACGATTCTCTAG
AGGGGACTCTTACACCCCGGAAGTCTTGCGATAAAGCAGCGCGTCAAACA
CCCGCTGCTGGAGGTTATCCTGTCGAAAAAGAGAAGAGAAGGCGCTCAGA
TTACAGCTGAGCTACCGCCTCTGTACGAAAAGGGGCTTGCGGAGGGCATG
GCAAGCGCGGAGCGATGAAGTGTTTCGTGATGAGGAAAACGAGGGATACT
TGAAGCCACACACCCTAGACATGATTGTGGTCGTGAAAATGCGATTGGAT
TGGCTCGTGGCGGGTAGCTTCGCCTTTCAATCCTTTCAATCGCTGAGCGC
AAATTAAAATGGCTGACCTTTTCTTTCCATGCACCCCCCCCCCCCCCCCC
CACCCTTCTCCTCGTCGATTCCGACGCTCGCATACCCTGCCTCTCACAAT
CTGTTGGACGCGACGCGAAATGAAAAAAATGTAGTTGTTGCTTCAGGAGT
GGTGAGGACAAGGGTATACTCGTAAAAGCCTTCTGAAACCCGAGTGGCAA
CGAGACGGAATTGCGACCCACGGCAGTTACAGCGAGACTTCAGCGCAGAG
GATCATCGAAGCATACGTGCACGCTCCGCGTGTGCTCGTATCAAGGGCGT
GTGAAAAGACTCGCTTAACAAGTCTTTGAGCATTTGTTAAGGTGGGAGGC
GGGAAGGGGTAGGCGGAGAAAAGAGGCTCTACAGTCTAAGAGAAAGGAGA
TTCTCGCAGGGAATTGAGGGGCGGAGAGGAGTATGTCGGAGCAGCCGAAG
GTGCCAAAATTTCGCGTTCCCGCGGCGTTCGTCTCGCCGGCGGCGTTATG
CCTGATCGCCGGAACCATCTGGTTCTTCGCGATGGACAGTACCTCGAAAG
AGGACGCCGAGGCCACGGTGCAGAAGGAGTTCCCTCATGTGAGCGGGTGT
TCTCTCTCCTTCGTCTTGTTTTTTGTGTGTATGTATGTATTTATTGTTGA
ATTGCTCGCAATCGCGCAATCTGGTCCTGCCGTGCTAGTCATTATATGCT
ACTCGCAGGCGTTGTTTGTGTTGTCATTTTTCTTTACACGCAGTTACGTA
ATCCGCCCTTGTCGCGCTAGTCATGCTATACTTGCTATCTAATCCTGACG
TGCTTCTCGTTCTATTACGCTCGTGTTGGTGCTCCCGATGGGGGACTTCT
GACCATTGGTGTGTGTGTGTAGTGGACGATAACGTGCGGGTAAAGCACTA
ATAATATAGTCTACGCAAAACGTAATGCAAAAAATGGAAACATGTCCGCA
AACTGAAGCGGAACCGGTTTTGCCGCAACGAGTGATTCTCGGCTCCGGCA
TGGAACTTTCATACCTACGCGGTTGACGGTCGTTCGCGCCTATTATCTTA
TTTCTCCCTTGTTAGAGCGGATCGCGCACTGCCGATCCTTGTCTCTCTCT
CTCTTGTAATATCATCAACATACACAAAGATCGTTCAAAATGTATCGGTT
TTATTTTTGACCCGCCCCCCCCCCCCCCCGAAAAAGGCCTTACATCCCTT
GTTCtatgTACCTTGATACTGCTGAAGATACGAGCCATGTCGTGCCTTCG
TCGCCTTGTGCTCCGCACGATTTTTCTGCATCTTTTACCTTTACGGAAGG
TTGTGAGAACAAGCCATGAGGTGGACGATCGCATGAAAGAGTTCTTCAGG
CGTGTTAACAACAATGATCCTAGAGAGGTGGGCGTGAGGATATGAGGGTA
CGCAGAAAAAATAAGTCAAGTCACTCTTGTCGCGCGGGCGGGCGGGCGAC
TGGCCTTACGGATTCTATTCAGTCCAGGGGCAGGGGAGCTGGTCTAATTT
TTCTTCGATATTTTTGACTCCGTACACAGGGTGTGAACACTATAATAGTA
CTGTCTGTAAACACTAGTTGTGTTGTATGTGTAGACTATGTATGCCAAGT
GTCGTGTGTACATGGTGAAATCTGAATTTATGTTCGGTGTATCCATATTT
AGATACGCGTGTGCTTAAGTACTGTATACTATATTGGTGTGTgcGCGCGC
GTACGTGTGTACGGGATGATCCTATTACTCTGTAGCCTGTAACTCAGAAT
CCGAAATATTTGTATTTAGAATAAGTAGTTCGTACTCTAAGACAGTCGTC
TTGACACCGATAAGTTTCCGATATTATCGGGTGGTTGAAGCTGATAAGGG
TTTTGTCGCGATTTGAATCCCTGTTGATTTTAGTAGCGGGTTGTCCCCAT
GATAGTGACCCGTTGACCTTTGTTTCTCTTCGTGACCACGAGCGGGATTA
CATTTGATAGGTCTATGGCTGATTCGTTGTGTCACCGCAGTTTCTTGAGC
TGCAAGGACAATATGCTGAATGTGTGAATGTCCTCTTACGATAAAGCTAT
AATAACACCTCAAAAAGAATGAGTTGAATCACAGtacagaTAGCACGCGA
TGTTTAGACCAGGCATGGCGCTCAACAGGTAACAACGCGGTAACAACGTG
CCCGTGAAAGGTACCTGGTACGAGTTAACTTAACCCTTTCAGAACTCTTG
TGCGAGTTTTATATTGATTTTTGTATAGAAAAAACAGACCGGATACCAAG
AGGGTTAATAAACCATTTTGGCGTTGCCGGGGAAAGTTATCTGAAAACAT
TAGTGAGCTCAGTGCCGTATTAATTCCTCTGCCGAAACCCCTCACGCACA
GAGAGGTTCCTATGTGTGCCATGCCGAATTCGTCAAAGCGAACGAAACGA
CCAGCTCACACACCCCGCGACCCCCGCTGCTATTTTCCTCCCACTCCCTA
CGTCTTTAATGATCGCCATACGCATGTCCTCAGGAGGAGCGCATGCGAAA
CCTCTTGAACAAGGGCAAGGGCGCCAACTACGACGCCAAGCGACACCACG
CCACTTCCAAGGACATCCAAAACTTCGGGTTCGTCCCCGAATCGTCCTCG
CCCGCGATAGCGGCAGGGTCAAAAAAGGTTGCCACCGCGGCGGAAACGAA
GTCGCGGAGCACGGCGGCGGAATCTGCCCGAGGCAATGACGGAGCGGGGG
CGCCCGACACCGGGAGCGGGATGGGTGAGCGGAAGCCCGGGAGAAAAGGG
TGGTTCTGGTGACAGCTACGCGGAGGGCCGTCAATCGAACGCGTGTATTT
TTTGTCGGTTTTCAACCCTTGCGCCTCCACCTCCTCTCGTTGATTCTCAC
TACCAGTTGTACGGGTTATTATCGTAGTAATTTCCCCCATTTTTTACGAG
TGTCTGACGTCGTTTAAGTCTTTTGTTGGGGTGGCTTAGGGGGGGGGGAC
GTGGCCCGAGGCGGGCTAGTTAAAAGAAGTGTAGGCGCGACAAAACATGT
TTGACGATTTTTGTTGAGGGGGTATTCAGTCACCCCTTGAAGTAAGTACC
CCTGTTACATACATACAAGCATGGCGTAGGTGTGTATAATGTACCTACTA
TTTTATACATGATATAAAAAA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1321:153684..160854+ >mRNA_F-serratus_M_contig1321.2409.1 ID=mRNA_F-serratus_M_contig1321.2409.1|Name=mRNA_F-serratus_M_contig1321.2409.1|organism=Fucus serratus male|type=CDS|length=1026bp|location=Sequence derived from alignment at F-serratus_M_contig1321:153684..160854+ (Fucus serratus male) ATGTCGGAGCAGCCGAAGGTGCCAAAATTTCGCGTTCCCGCGGCGTTCGT CTCGCCGGCGGCGTTATGCCTGATCGCCGGAACCATCTGGTTCTTCGCGA TGGACAGTACCTCGAAAGAGGACGCCGAGGCCACGGTGCAGAAGGAGTTC CCTCATATGTCGGAGCAGCCGAAGGTGCCAAAATTTCGCGTTCCCGCGGC GTTCGTCTCGCCGGCGGCGTTATGCCTGATCGCCGGAACCATCTGGTTCT TCGCGATGGACAGTACCTCGAAAGAGGACGCCGAGGCCACGGTGCAGAAG GAGTTCCCTCATGTTGTGAGAACAAGCCATGAGGTGGACGATCGCATGAA AGAGTTCTTCAGGCGTGTTAACAACAATGATCCTAGAGAGGTTGTGAGAA CAAGCCATGAGGTGGACGATCGCATGAAAGAGTTCTTCAGGCGTGTTAAC AACAATGATCCTAGAGAGGAGGAGCGCATGCGAAACCTCTTGAACAAGGG CAAGGGCGCCAACTACGACGCCAAGCGACACCACGCCACTTCCAAGGACA TCCAAAACTTCGGGTTCGTCCCCGAATCGTCCTCGCCCGCGATAGCGGCA GGGTCAAAAAAGGTTGCCACCGCGGCGGAAACGAAGTCGCGGAGCACGGC GGCGGAATCTGCCCGAGGCAATGACGGAGCGGGGGCGCCCGACACCGGGA GCGGGATGGGTGAGCGGAAGCCCGGGAGAAAAGGGTGGTTCTGGTGAGAG GAGCGCATGCGAAACCTCTTGAACAAGGGCAAGGGCGCCAACTACGACGC CAAGCGACACCACGCCACTTCCAAGGACATCCAAAACTTCGGGTTCGTCC CCGAATCGTCCTCGCCCGCGATAGCGGCAGGGTCAAAAAAGGTTGCCACC GCGGCGGAAACGAAGTCGCGGAGCACGGCGGCGGAATCTGCCCGAGGCAA TGACGGAGCGGGGGCGCCCGACACCGGGAGCGGGATGGGTGAGCGGAAGC CCGGGAGAAAAGGGTGGTTCTGGTGA back to top
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