mRNA_F-serratus_M_contig1320.2398.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1320.2398.1
Unique NamemRNA_F-serratus_M_contig1320.2398.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1320.2398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1320contigF-serratus_M_contig1320:86092..87155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1064
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1320.2398.1prot_F-serratus_M_contig1320.2398.1Fucus serratus malepolypeptideF-serratus_M_contig1320 86170..87024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929287.4583158-UTR-F-serratus_M_contig1320:86091..861691622929287.4583158-UTR-F-serratus_M_contig1320:86091..86169Fucus serratus maleUTRF-serratus_M_contig1320 86092..86169 +
1690962784.487009-UTR-F-serratus_M_contig1320:86091..861691690962784.487009-UTR-F-serratus_M_contig1320:86091..86169Fucus serratus maleUTRF-serratus_M_contig1320 86092..86169 +
1622929287.5105598-UTR-F-serratus_M_contig1320:87024..871551622929287.5105598-UTR-F-serratus_M_contig1320:87024..87155Fucus serratus maleUTRF-serratus_M_contig1320 87025..87155 +
1690962784.502357-UTR-F-serratus_M_contig1320:87024..871551690962784.502357-UTR-F-serratus_M_contig1320:87024..87155Fucus serratus maleUTRF-serratus_M_contig1320 87025..87155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929287.491706-CDS-F-serratus_M_contig1320:86169..870241622929287.491706-CDS-F-serratus_M_contig1320:86169..87024Fucus serratus maleCDSF-serratus_M_contig1320 86170..87024 +
1690962784.495071-CDS-F-serratus_M_contig1320:86169..870241690962784.495071-CDS-F-serratus_M_contig1320:86169..87024Fucus serratus maleCDSF-serratus_M_contig1320 86170..87024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1320.2398.1

>prot_F-serratus_M_contig1320.2398.1 ID=prot_F-serratus_M_contig1320.2398.1|Name=mRNA_F-serratus_M_contig1320.2398.1|organism=Fucus serratus male|type=polypeptide|length=285bp
MTYQMLIIPLVVTKEVPRSTGHIVVITRCSDQQGSKSRHKSHATLQAMMA
PTKIKTVHQTSLLRIESCLDILGMLPPTHVQRSQQKTENARTSFDHQVQA
CQGHTLYNNKEYLNAEVHGGGDLELMKPVREPASSRPKPCATSKRPTNLA
CSPLLVALVGRKTTVIRHQLFPHKPPVHALILAHWGSAHPWLVDDRAAFP
PRRIWCVPTHRALPGSPRQCSLPLACRHPPEGHQLGARKGRIPGNAILSQ
PYRRRRISTNRPNREGSQLAASLECEPGPTPTGT*
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mRNA from alignment at F-serratus_M_contig1320:86092..87155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1320.2398.1 ID=mRNA_F-serratus_M_contig1320.2398.1|Name=mRNA_F-serratus_M_contig1320.2398.1|organism=Fucus serratus male|type=mRNA|length=1064bp|location=Sequence derived from alignment at F-serratus_M_contig1320:86092..87155+ (Fucus serratus male)
GTTGCTGATTCACGCATTTCAGCGTATTGTCGTTGCAACTGAAGAAACTA
CCGTGACGCAACAAGTTAGCCATAGACTATGACCTATCAAATGCTAATAA
TCCCGCTTGTGGTCACAAAAGAGGTACCAAGGTCAACGGGTCACATCGTG
GTGATAACCCGCTGCTCAGACCAACAGGGATCCAAATCGCGACACAAGAG
CCATGCAACTCTGCAAGCAATGATGGCACCGACCAAAATCAAAACGGTTC
ATCAAACCTCCTTGCTCCGTATCGAGAGTTGCCTCGATATACTCGGAATG
CTGCCGCCTACCCATGTCCAGCGTTCTCAGCAAAAAACGGAAAACGCTCG
TACCAGTTTTGATCATCAAGTCCAAGCTTGTCAAGGCCACACTTTGTACA
ATAATAAGGAATATTTAAATGCCGAGGTCCATGGTGGTGGAGACCTTGAG
CTGATGAAGCCGGTGCGCGAGCCAGCATCCAGCCGTCCAAAGCCATGTGC
AACTTCAAAAAGGCCCACGAATCTTGCCTGTTCGCCGCTCCTTGTGGCCC
TCGTAGGAAGAAAAACGACCGTGATCAGACATCAGCTTTTCCCTCATAAA
CCCCCCGTTCACGCCTTGATTCTCGCGCACTGGGGTTCAGCCCACCCCTG
GCTCGTCGACGATCGAGCTGCCTTCCCCCCTCGCCGAATTTGGTGCGTAC
CCACCCATAGAGCACTACCAGGCTCTCCGCGACAGTGCTCCCTGCCTCTC
GCGTGCCGCCACCCTCCCGAAGGGCACCAACTTGGAGCTCGAAAGGGGCG
CATACCTGGGAACGCCATCCTCAGCCAACCATACCGCCGCCGCCGCATTT
CAACCAACAGACCAAATCGCGAAGGCAGCCAGTTGGCTGCATCTCTCGAG
TGTGAGCCCGGCCCTACACCCACCGGAACATAAGTCAAACGGACACGAAC
AGCAGCCGTAGTATCACCGGGGCACGGGTATAGGAGGAGAATCACCGGTA
ATGAAAGATGAAATTGAGGGGGCTGGTTACCGACCACGTGATGAGCGGAG
ATACACGGCGGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1320:86092..87155+

>mRNA_F-serratus_M_contig1320.2398.1 ID=mRNA_F-serratus_M_contig1320.2398.1|Name=mRNA_F-serratus_M_contig1320.2398.1|organism=Fucus serratus male|type=CDS|length=1710bp|location=Sequence derived from alignment at F-serratus_M_contig1320:86092..87155+ (Fucus serratus male)
ATGACCTATCAAATGCTAATAATCCCGCTTGTGGTCACAAAAGAGGTACC
AAGGTCAACGGGTCACATCGTGGTGATAACCCGCTGCTCAGACCAACAGG
GATCCAAATCGCGACACAAGAGCCATGCAACTCTGCAAGCAATGATGGCA
CCGACCAAAATCAAAACGGTTCATCAAACCTCCTTGCTCCGTATCGAGAG
TTGCCTCGATATACTCGGAATGCTGCCGCCTACCCATGTCCAGCGTTCTC
AGCAAAAAACGGAAAACGCTCGTACCAGTTTTGATCATCAAGTCCAAGCT
TGTCAAGGCCACACTTTGTACAATAATAAGGAATATTTAAATGCCGAGGT
CCATGGTGGTGGAGACCTTGAGCTGATGAAGCCGGTGCGCGAGCCAGCAT
CCAGCCGTCCAAAGCCATGTGCAACTTCAAAAAGGCCCACGAATCTTGCC
TGTTCGCCGCTCCTTGTGGCCCTCGTAGGAAGAAAAACGACCGTGATCAG
ACATCAGCTTTTCCCTCATAAACCCCCCGTTCACGCCTTGATTCTCGCGC
ACTGGGGTTCAGCCCACCCCTGGCTCGTCGACGATCGAGCTGCCTTCCCC
CCTCGCCGAATTTGGTGCGTACCCACCCATAGAGCACTACCAGGCTCTCC
GCGACAGTGCTCCCTGCCTCTCGCGTGCCGCCACCCTCCCGAAGGGCACC
AACTTGGAGCTCGAAAGGGGCGCATACCTGGGAACGCCATCCTCAGCCAA
CCATACCGCCGCCGCCGCATTTCAACCAACAGACCAAATCGCGAAGGCAG
CCAGTTGGCTGCATCTCTCGAGTGTGAGCCCGGCCCTACACCCACCGGAA
CATAAATGACCTATCAAATGCTAATAATCCCGCTTGTGGTCACAAAAGAG
GTACCAAGGTCAACGGGTCACATCGTGGTGATAACCCGCTGCTCAGACCA
ACAGGGATCCAAATCGCGACACAAGAGCCATGCAACTCTGCAAGCAATGA
TGGCACCGACCAAAATCAAAACGGTTCATCAAACCTCCTTGCTCCGTATC
GAGAGTTGCCTCGATATACTCGGAATGCTGCCGCCTACCCATGTCCAGCG
TTCTCAGCAAAAAACGGAAAACGCTCGTACCAGTTTTGATCATCAAGTCC
AAGCTTGTCAAGGCCACACTTTGTACAATAATAAGGAATATTTAAATGCC
GAGGTCCATGGTGGTGGAGACCTTGAGCTGATGAAGCCGGTGCGCGAGCC
AGCATCCAGCCGTCCAAAGCCATGTGCAACTTCAAAAAGGCCCACGAATC
TTGCCTGTTCGCCGCTCCTTGTGGCCCTCGTAGGAAGAAAAACGACCGTG
ATCAGACATCAGCTTTTCCCTCATAAACCCCCCGTTCACGCCTTGATTCT
CGCGCACTGGGGTTCAGCCCACCCCTGGCTCGTCGACGATCGAGCTGCCT
TCCCCCCTCGCCGAATTTGGTGCGTACCCACCCATAGAGCACTACCAGGC
TCTCCGCGACAGTGCTCCCTGCCTCTCGCGTGCCGCCACCCTCCCGAAGG
GCACCAACTTGGAGCTCGAAAGGGGCGCATACCTGGGAACGCCATCCTCA
GCCAACCATACCGCCGCCGCCGCATTTCAACCAACAGACCAAATCGCGAA
GGCAGCCAGTTGGCTGCATCTCTCGAGTGTGAGCCCGGCCCTACACCCAC
CGGAACATAA
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