mRNA_F-serratus_M_contig132.2392.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig132.2392.1
Unique NamemRNA_F-serratus_M_contig132.2392.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig132.2392.1 vs. uniprot
Match: D8LEX7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX7_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.980e-38
Identity = 88/157 (56.05%), Postives = 108/157 (68.79%), Query Frame = 1 
Query:  142 VAIVVGCGVFTLVILCIVRKIMDLCLMRFDPTGSISYSQEEGLPKATIERLPQTRYRKPPPKVQVKAAKIGEKHDGPASIG-----AAAVTGGDVSSVSVTEADEERGSTIIVPVVAA-AGAEESAADG-RDSTEDMCAICLIEYEHGDDLRIIPGC 591
            ++IVVGCGV TL++LC+VRK+MDLCL+R DPTGS+ YSQEEGL K +IERLPQTRY++P   V   A K G+K   PAS G       A   G+   V+ ++     GS+   P  A  AGAE    +G RDSTEDMCAICL+EYE GD+LRIIPGC
Sbjct:   63 ISIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPQTRYKRP---VSGTAQKKGDKKT-PASDGKKPDDTEAAAAGEEGGVTGSDLHGPPGSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGC 215
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BLAST of mRNA_F-serratus_M_contig132.2392.1 vs. uniprot
Match: A0A6H5KYP0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP0_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.970e-35
Identity = 82/155 (52.90%), Postives = 102/155 (65.81%), Query Frame = 1 
Query:  142 VAIVVGCGVFTLVILCIVRKIMDLCLMRFDPTGSISYSQEEGLPKATIERLPQTRYRKPPP-KVQVKAAKIGEKHDGPASIGAAAVTGGDVSSVSVTEADE----ERGSTIIVPVVAAAGAEESAADGRDSTEDMCAICLIEYEHGDDLRIIPGC 591
            ++IVVGCGV TL++LC+VRK+MDLCL+R DPTGS+ YSQEEGL K +IERLP+TRY++P     Q K  K     DG    G  A   G+   V+ ++         G+     V+AA G E   A  RDSTEDMCAICL+EYE GD+LRIIPGC
Sbjct:  256 ISIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPETRYKRPVSGSAQKKGGKKTPAADGKKPDGTEAAAAGEEGGVTGSDLHGAPAGRTGAPQTAVVLAAEGGEREGA--RDSTEDMCAICLVEYETGDELRIIPGC 408
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig132.2392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEX7_ECTSI2.980e-3856.05RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KYP0_9PHAE1.970e-3552.90RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig132contigF-serratus_M_contig132:465442..468562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue3.5e-34
Seed eggNOG ortholog2880.D8LEX7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size594
Cds size594
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929285.233277-CDS-F-serratus_M_contig132:465441..4656421622929285.233277-CDS-F-serratus_M_contig132:465441..465642Fucus serratus maleCDSF-serratus_M_contig132 465442..465642 +
1690962784.033507-CDS-F-serratus_M_contig132:465441..4656421690962784.033507-CDS-F-serratus_M_contig132:465441..465642Fucus serratus maleCDSF-serratus_M_contig132 465442..465642 +
1622929285.2472162-CDS-F-serratus_M_contig132:468169..4685621622929285.2472162-CDS-F-serratus_M_contig132:468169..468562Fucus serratus maleCDSF-serratus_M_contig132 468170..468562 +
1690962784.0480525-CDS-F-serratus_M_contig132:468169..4685621690962784.0480525-CDS-F-serratus_M_contig132:468169..468562Fucus serratus maleCDSF-serratus_M_contig132 468170..468562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig132.2392.1prot_F-serratus_M_contig132.2392.1Fucus serratus malepolypeptideF-serratus_M_contig132 465442..468562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig132.2392.1

>prot_F-serratus_M_contig132.2392.1 ID=prot_F-serratus_M_contig132.2392.1|Name=mRNA_F-serratus_M_contig132.2392.1|organism=Fucus serratus male|type=polypeptide|length=198bp
PGPADLPVGGFDCTELKKGEKDPGEGANIVDDSMAGEGNTSMNLDVIVAI
VVGCGVFTLVILCIVRKIMDLCLMRFDPTGSISYSQEEGLPKATIERLPQ
TRYRKPPPKVQVKAAKIGEKHDGPASIGAAAVTGGDVSSVSVTEADEERG
STIIVPVVAAAGAEESAADGRDSTEDMCAICLIEYEHGDDLRIIPGCK
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mRNA from alignment at F-serratus_M_contig132:465442..468562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig132.2392.1 ID=mRNA_F-serratus_M_contig132.2392.1|Name=mRNA_F-serratus_M_contig132.2392.1|organism=Fucus serratus male|type=mRNA|length=3121bp|location=Sequence derived from alignment at F-serratus_M_contig132:465442..468562+ (Fucus serratus male)
CCCGGCCCGGCCGACCTGCCCGTGGGCGGTTTTGATTGTACCGAGTTAAA
GAAAGGAGAAAAAGACCCCGGTGAAGGTGCCAACATTGTTGACGATTCCA
TGGCGGGTGAAGGAAACACCAGCATGAACCTGGATGTGATCGTTGCGATC
GTGGTCGGCTGCGGCGTGTTCACGCTGGTTATTCTGTGCATCGTCCGCAA
GGTACACTTACACAAGCTGGGCTGGCCAAGAAACTGACTTCTGTTCGTTC
ATGTCTCGCTCTGCCGTTTCTACGAGTTAAAGCTTGAAATTTGGAGGCTG
CTCCTATACGGCAAAAAGGGAAGCGCAGGCACCGGAATTTTTCGAATCCG
AGTTGATTTTGGTAAACAATGACCAATTGGCGGCGTAGTGGAGGATACTT
CCTATACTAAAATCAGTATGAAAAAAAGTGTCACGGATCAAGCTGAAATT
TGGTGTACACGTACCCAGGAGCACCGCAAGAGCGTGGGTGGTAGTTACAA
GGCTCGCCTCGTTTTCTATCAAGAGTTGCGGCCTCGTAAAGATTCCTATA
CAAAACACAAGTGAACTGAGGAAATGTGGGGGTATCGCTATTTGCCACGC
GGTTTTTACGATTTTTCACTTGAAATTTTGACACGTGATTTAGACCGCTC
TTGCGGAGAGGACCACCCCTGCACATTTTTTGTATTTTTTGTATTTTTCC
CATCATTTCGTCGCGAAACAAATATTCCCACATCTACTTATATCCGACTA
TCATACCATAACTTACGAAAAAAAACTAAAACCAAAATGTGTAGAAGTGG
TCCTCTTCGCAAGAGCAATCTAAATCACGTGTCAAAATTTCTGGTGAAAA
TTCGTAAAAACCGCGTGGCAAATCCCATTCCGCCATGTGTACAGCGTCTT
GGCCAGCCCAGCCTGTATGAAACTGTCACTTCACTTGTGTTTGCTGGTAA
TATTGAAGAAATTTTAGTCTTGGCGTTGTTGTAGATTTTCTCAAGGCCGT
TATTTTTGTTGTTGAAATGTTGGTAAATCCTCTCTCAAGCATCCACCACG
CACCAAAACCCTCTCTTTTTTTCACTGTACTTCAGTACGGACCCACTGAT
AAGAATGTTTTTACTTAGAAATTGAAACTGGAAAGTGTTGGAAAATCAAG
AAATTTGTCAGAAGAGATGGGCTTATTCGCTGGCACAAGATAAGAAATGG
CAAAATGTAGACATGAAGGAAGATGTGGCAGGCGGGGGCATGCCCGCTCT
AAACTCCTTCATTGGTATAGATGTGGCAGGCGGGGGCATGCCCGCTCCAA
ACTCCTTCATTGTTTGGTTATTGCGAGCGTTTAGCGAGCTTCTAATCTGT
GTGCTGTATCAATTTGAGCTCGGGTGTATCAAAATACGGGGCACTTTGAC
CAATCATGAATGTGCCGTATATTCCTTTTCGTAATGTTACTCCGTCAAAA
GTTTTCTTTTTATGGGAGACAGAAAAAGGAAATTTCTGTCGTATGGGAGC
GTATGGGAGACAGAAAAAGGAAATTTCACATTGCACCAACACCTGTGTTC
AGCTGACGATAGTTACAGGACTATCCTTTAGCGAGCGTATAGCGATAGCT
ACCCTATCTTTTTATATTTTCCCGCTCCACAAAGCGGGCCCGAACTATAC
AGTAGTCGCGGCGGAAATTTGGGAGATGCAGTACCTGTTAACCGTGAGGT
TTAATTCCGATTCGTGCGGTTCCGGTTTTTTTTTCGTCATCGGAGCACGT
TTGTTTGTCGTATGCGATAATTTTTTTTTTTCGTATGTACGCCTTCGTAC
GGGTTTGTTGCTTTGATACCGTCGACTAGTTTTCGATGTGATGTAATCAT
ACTACTTGTATAGAGTACTATTAATAGACAGACAGTTTACATGTTGTTTG
CACGTGCCAAGCATGAGAGGGCTTTAAATGTTGTTTCATTAAAATCAAAT
GATGTCGTATGTTTTGCCCAATCGCGTTGGTCTTAATATTTCTAACATTC
TATAATGTTTTTGTCGCAGTATAAATGCTGGTGTTTATAGCGAGATATAC
ACATACGGAAGTGTGAAGTTGTCATATGAACACCACCCTATCTCTAATGG
TTACACATATACTGTAGCAAGAAGAGTATGGATCAACCGGGTAAGATTGC
CAATAATCCTGCACGTGGTCAGCTGAACAGAGAAAATGAATATTTCTCTG
TCCGCGTTCGTGCCTGTGAGTTTGGTCTCGCGAGACGGGTCCGCAGTCTC
GTCCCGCGTCAGCCTACTCATCTCCACACTCAGTCTGAATCTGGTGCTTA
CTTAAGGGATTCCTCCCGAGTTTCGCGGCGGCATCCATATATTTATTTAA
ACCGCCATACGCTGTTGGGTCATTCCCGAGTTTATCGGGTCACGCAATTG
CGTACCGATGGCGTTCACTGCGGAGAGTCCGCCGGCATAGGGCCAGTAAA
CATCAAGGTAGCTCCGAACGAGTGTTGCCTTGGCAGGTCACCATGAACCA
ATTAACATGCGCCTCTCTTTCCCACACCCACTATTGGTATGAAGTGGGCA
TGTTGAAAGTACCGTGTAACTGGAGGACTCGCTGTAGATATCGACCGAAT
TATCTACCCTGTTCTCCCGTGCCCCCCCCCCCCCCCACTCTTCATGATTT
GGAACTCCTTCCACCTCCAACCCTCACCGCTATGCACACTAAGTATCGTA
TTAACCCCCCCTCCCCCCAACACAACAGATTATGGATCTGTGCCTTATGC
GCTTCGACCCCACGGGCAGCATCAGCTATTCTCAGGAAGAGGGCCTGCCG
AAGGCCACCATCGAGCGTTTGCCTCAGACTCGCTACAGGAAGCCTCCGCC
CAAGGTTCAGGTGAAAGCCGCCAAAATTGGGGAGAAGCATGACGGCCCTG
CCTCCATAGGGGCTGCTGCCGTCACCGGAGGAGATGTTTCGTCGGTCAGT
GTGACGGAGGCGGACGAGGAGAGGGGGTCTACCATTATCGTCCCCGTGGT
GGCGGCGGCTGGAGCAGAGGAAAGCGCCGCGGACGGACGGGACAGCACGG
AGGACATGTGCGCGATCTGTCTGATCGAGTATGAGCACGGGGACGACCTT
CGGATCATCCCCGGATGCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig132:465442..468562+

>mRNA_F-serratus_M_contig132.2392.1 ID=mRNA_F-serratus_M_contig132.2392.1|Name=mRNA_F-serratus_M_contig132.2392.1|organism=Fucus serratus male|type=CDS|length=1188bp|location=Sequence derived from alignment at F-serratus_M_contig132:465442..468562+ (Fucus serratus male)
CCCGGCCCGGCCGACCTGCCCGTGGGCGGTTTTGATTGTACCGAGTTAAA
GAAAGGAGAAAAAGACCCCGGTGAAGGTGCCAACATTGTTGACGATTCCA
TGGCGGGTGAAGGAAACACCAGCATGAACCTGGATGTGATCGTTGCGATC
GTGGTCGGCTGCGGCGTGTTCACGCTGGTTATTCTGTGCATCGTCCGCAA
GCCCGGCCCGGCCGACCTGCCCGTGGGCGGTTTTGATTGTACCGAGTTAA
AGAAAGGAGAAAAAGACCCCGGTGAAGGTGCCAACATTGTTGACGATTCC
ATGGCGGGTGAAGGAAACACCAGCATGAACCTGGATGTGATCGTTGCGAT
CGTGGTCGGCTGCGGCGTGTTCACGCTGGTTATTCTGTGCATCGTCCGCA
AGATTATGGATCTGTGCCTTATGCGCTTCGACCCCACGGGCAGCATCAGC
TATTCTCAGGAAGAGGGCCTGCCGAAGGCCACCATCGAGCGTTTGCCTCA
GACTCGCTACAGGAAGCCTCCGCCCAAGGTTCAGGTGAAAGCCGCCAAAA
TTGGGGAGAAGCATGACGGCCCTGCCTCCATAGGGGCTGCTGCCGTCACC
GGAGGAGATGTTTCGTCGGTCAGTGTGACGGAGGCGGACGAGGAGAGGGG
GTCTACCATTATCGTCCCCGTGGTGGCGGCGGCTGGAGCAGAGGAAAGCG
CCGCGGACGGACGGGACAGCACGGAGGACATGTGCGCGATCTGTCTGATC
GAGTATGAGCACGGGGACGACCTTCGGATCATCCCCGGATGCAAGATTAT
GGATCTGTGCCTTATGCGCTTCGACCCCACGGGCAGCATCAGCTATTCTC
AGGAAGAGGGCCTGCCGAAGGCCACCATCGAGCGTTTGCCTCAGACTCGC
TACAGGAAGCCTCCGCCCAAGGTTCAGGTGAAAGCCGCCAAAATTGGGGA
GAAGCATGACGGCCCTGCCTCCATAGGGGCTGCTGCCGTCACCGGAGGAG
ATGTTTCGTCGGTCAGTGTGACGGAGGCGGACGAGGAGAGGGGGTCTACC
ATTATCGTCCCCGTGGTGGCGGCGGCTGGAGCAGAGGAAAGCGCCGCGGA
CGGACGGGACAGCACGGAGGACATGTGCGCGATCTGTCTGATCGAGTATG
AGCACGGGGACGACCTTCGGATCATCCCCGGATGCAAG
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