mRNA_F-serratus_M_contig132.2387.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig132.2387.1
Unique NamemRNA_F-serratus_M_contig132.2387.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig132.2387.1 vs. uniprot
Match: A0A6H5LCR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCR6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.580e-23
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 3 
Query:   57 KKSLVGRLVSSRECAEQWQDFISTTLVKELGKQLKPLGGFPVPSREDENQLSSDFPDEAVDMDETPVLMETISRSQT 287
            KK+ V  L++ R+CAE WQ+F+ TT+  E+ +QL PLGGF VPSREDENQLSSDFPDEAVDMD+T  L+E ++R QT
Sbjct:  870 KKTFVAGLLAERDCAEHWQEFVRTTVAAEVSRQLNPLGGFAVPSREDENQLSSDFPDEAVDMDDTSGLLENMNRMQT 946
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BLAST of mRNA_F-serratus_M_contig132.2387.1 vs. uniprot
Match: D8LEY3_ECTSI (Serine/threonine-protein phosphatase 6 regulatory subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY3_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.780e-23
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 3 
Query:   57 KKSLVGRLVSSRECAEQWQDFISTTLVKELGKQLKPLGGFPVPSREDENQLSSDFPDEAVDMDETPVLMETISRSQT 287
            KK+ V  L++ R+CAE WQ+F+ TT+  E+ +Q+ PLGGF VPSREDENQLSSDFPDEAVDMD+T  L+E ++R QT
Sbjct:  832 KKTFVAGLLAERDCAEHWQEFVRTTVAAEVSRQMNPLGGFAVPSREDENQLSSDFPDEAVDMDDTSGLLENMNRMQT 908
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig132.2387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LCR6_9PHAE2.580e-2363.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEY3_ECTSI4.780e-2362.34Serine/threonine-protein phosphatase 6 regulatory ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig132contigF-serratus_M_contig132:350234..351218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue3.1e-20
Seed eggNOG ortholog2880.D8LEY3
KEGG koko:K15501
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000235,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005818,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007275,GO:0008150,GO:0009790,GO:0009987,GO:0015630,GO:0016043,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0030029,GO:0030036,GO:0030588,GO:0030590,GO:0030865,GO:0030866,GO:0032501,GO:0032502,GO:0040001,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051293,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0071840,GO:0071944,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1902850,GO:1903047
EggNOG free text desc.protein phosphatase binding
EggNOG OGsKOG2073@1,KOG2073@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Exons2
Model size517
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig132.2387.1prot_F-serratus_M_contig132.2387.1Fucus serratus malepolypeptideF-serratus_M_contig132 350234..351195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929284.519854-CDS-F-serratus_M_contig132:350233..3505181622929284.519854-CDS-F-serratus_M_contig132:350233..350518Fucus serratus maleCDSF-serratus_M_contig132 350234..350518 -
1690962783.6210084-CDS-F-serratus_M_contig132:350233..3505181690962783.6210084-CDS-F-serratus_M_contig132:350233..350518Fucus serratus maleCDSF-serratus_M_contig132 350234..350518 -
1622929284.5330513-CDS-F-serratus_M_contig132:350988..3511951622929284.5330513-CDS-F-serratus_M_contig132:350988..351195Fucus serratus maleCDSF-serratus_M_contig132 350989..351195 -
1690962783.6315897-CDS-F-serratus_M_contig132:350988..3511951690962783.6315897-CDS-F-serratus_M_contig132:350988..351195Fucus serratus maleCDSF-serratus_M_contig132 350989..351195 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929284.5480099-UTR-F-serratus_M_contig132:351195..3512181622929284.5480099-UTR-F-serratus_M_contig132:351195..351218Fucus serratus maleUTRF-serratus_M_contig132 351196..351218 -
1690962783.6389282-UTR-F-serratus_M_contig132:351195..3512181690962783.6389282-UTR-F-serratus_M_contig132:351195..351218Fucus serratus maleUTRF-serratus_M_contig132 351196..351218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig132.2387.1

>prot_F-serratus_M_contig132.2387.1 ID=prot_F-serratus_M_contig132.2387.1|Name=mRNA_F-serratus_M_contig132.2387.1|organism=Fucus serratus male|type=polypeptide|length=164bp
MAGAGAGAGASKKSLVGRLVSSRECAEQWQDFISTTLVKELGKQLKPLGG
FPVPSREDENQLSSDFPDEAVDMDETPVLMETISRSQTGVISGSAGEVPS
VDIGGGDASPLITSAGAGAGIGVAMHDPGDDLDEDDGDDFEASNLSGDNG
SLSMMFMSNAGPAW
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mRNA from alignment at F-serratus_M_contig132:350234..351218-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig132.2387.1 ID=mRNA_F-serratus_M_contig132.2387.1|Name=mRNA_F-serratus_M_contig132.2387.1|organism=Fucus serratus male|type=mRNA|length=985bp|location=Sequence derived from alignment at F-serratus_M_contig132:350234..351218- (Fucus serratus male)
GGGAGACGGAGGTGTCAGCTGCGATGGCGGGAGCGGGTGCTGGCGCGGGG
GCGTCTAAGAAAAGCCTGGTGGGGCGGCTGGTGTCGAGCAGGGAATGCGC
GGAACAGTGGCAGGATTTCATTTCCACGACGCTGGTCAAGGAGTTGGGCA
AGCAGCTCAAACCGCTCGGAGGATTCCCCGTACCCTCCAGAGAAGACGAA
AACCAGCTGTCCTCGGACTTCCCAGACGAGGTGGGTTTCCGAGAATTTTG
CGAATTGTGTGCGCGACTGATTGCTTTTTGTACGAAGTCCTATGTATGTT
ATTATACTCCTGTTGGTAAGGATTACGCGAAAGGTTTACTCTATCACCGG
CCAGTCCTGCACTGGCTTCCTGTTTTTGTAGCTTCACGCGGTGTAAGTTT
TGCGCGGAATATAAGGTGTGGGAAATTACCGTCGTCTTAATTCGCACCAG
AAGGTCCTTGGACGTGGGCAGCAGAAGGTACTTTTATTGGGCCGCGGCCT
CCCTGCCCCCCCCCTCTCCCCCTCCCAAAAAAACAAAACTGGGGACATGA
GAGGCTGGCACGAAAGAAAAAAGTGAGCTGAGCTGTTGTTGCTGCTGCAG
CGTCTGGGAAGAAACGTAAAAAACACCACCTAAACGAACTTGAGGGGCTT
GACCTCCTTCTTCCCGTCCGTGGCCCGCGCGCAACCTTTGTTAATGCCAG
GCGGTGGACATGGACGAAACGCCGGTGCTAATGGAAACCATTTCCCGCTC
GCAGACCGGCGTGATTTCGGGCAGCGCGGGTGAAGTTCCCTCCGTCGACA
TCGGCGGTGGTGACGCCAGCCCGCTAATTACGAGCGCTGGGGCTGGGGCT
GGTATCGGGGTTGCGATGCACGACCCGGGGGACGATCTAGACGAGGATGA
CGGAGACGACTTCGAGGCATCAAATCTCTCGGGGGATAACGGCTCGCTCT
CGATGATGTTCATGAGCAACGCCGGACCGGCGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig132:350234..351218-

>mRNA_F-serratus_M_contig132.2387.1 ID=mRNA_F-serratus_M_contig132.2387.1|Name=mRNA_F-serratus_M_contig132.2387.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig132:350234..351218- (Fucus serratus male)
ATGGCGGGAGCGGGTGCTGGCGCGGGGGCGTCTAAGAAAAGCCTGGTGGG
GCGGCTGGTGTCGAGCAGGGAATGCGCGGAACAGTGGCAGGATTTCATTT
CCACGACGCTGGTCAAGGAGTTGGGCAAGCAGCTCAAACCGCTCGGAGGA
TTCCCCGTACCCTCCAGAGAAGACGAAAACCAGCTGTCCTCGGACTTCCC
AGACGAGATGGCGGGAGCGGGTGCTGGCGCGGGGGCGTCTAAGAAAAGCC
TGGTGGGGCGGCTGGTGTCGAGCAGGGAATGCGCGGAACAGTGGCAGGAT
TTCATTTCCACGACGCTGGTCAAGGAGTTGGGCAAGCAGCTCAAACCGCT
CGGAGGATTCCCCGTACCCTCCAGAGAAGACGAAAACCAGCTGTCCTCGG
ACTTCCCAGACGAGGCGGTGGACATGGACGAAACGCCGGTGCTAATGGAA
ACCATTTCCCGCTCGCAGACCGGCGTGATTTCGGGCAGCGCGGGTGAAGT
TCCCTCCGTCGACATCGGCGGTGGTGACGCCAGCCCGCTAATTACGAGCG
CTGGGGCTGGGGCTGGTATCGGGGTTGCGATGCACGACCCGGGGGACGAT
CTAGACGAGGATGACGGAGACGACTTCGAGGCATCAAATCTCTCGGGGGA
TAACGGCTCGCTCTCGATGATGTTCATGAGCAACGCCGGACCGGCGTGGG
CGGTGGACATGGACGAAACGCCGGTGCTAATGGAAACCATTTCCCGCTCG
CAGACCGGCGTGATTTCGGGCAGCGCGGGTGAAGTTCCCTCCGTCGACAT
CGGCGGTGGTGACGCCAGCCCGCTAATTACGAGCGCTGGGGCTGGGGCTG
GTATCGGGGTTGCGATGCACGACCCGGGGGACGATCTAGACGAGGATGAC
GGAGACGACTTCGAGGCATCAAATCTCTCGGGGGATAACGGCTCGCTCTC
GATGATGTTCATGAGCAACGCCGGACCGGCGTGG
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