mRNA_F-serratus_M_contig132.2385.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig132.2385.1 vs. uniprot
Match: A0A6H5L0R8_9PHAE (ARID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R8_9PHAE) HSP 1 Score: 149 bits (376), Expect = 1.400e-37 Identity = 88/176 (50.00%), Postives = 109/176 (61.93%), Query Frame = 3
Query: 21 MEENAVVALEGLYSDPMKVRELAQAREIFAFLRANGQGSVLEKVPSVDGGASVLDIVALFGVITSRGGVRRVQEQSLWKEVMTGLGYPFDRQTLFAVSMHYKNFLYGYEQAALGARADVGGQQKSLPPQAQPPLPXXXXXXXARPPVASQVGGVAQPFDQ---YQRHLRQREFEKQ 539
M+E AV ALE LYS P+K REL +AREIFAFLR+NGQG+VL VP V+G +LD+VAL IT RGGVRRVQ++ LW EV + LG +QTLF +S+HYKNFLYG+EQ +R+ G Q XX R A G Q ++Q YQ +RQRE E+Q
Sbjct: 1 MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGTVLRDVPMVNG--KLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQVHFPSRSSAGQHQXXXXXXXXXXXXXXVVPPMGRDQHAGMSGVGTQRYEQHGHYQGQMRQRELEQQ 174
BLAST of mRNA_F-serratus_M_contig132.2385.1 vs. uniprot
Match: D8LEX2_ECTSI (ARID/BRIGHT DNA binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX2_ECTSI) HSP 1 Score: 138 bits (348), Expect = 1.630e-33 Identity = 74/123 (60.16%), Postives = 89/123 (72.36%), Query Frame = 3
Query: 21 MEENAVVALEGLYSDPMKVRELAQAREIFAFLRANGQGSVLEKVPSVDGGASVLDIVALFGVITSRGGVRRVQEQSLWKEVMTGLGYPFDRQTLFAVSMHYKNFLYGYEQAALGARADVGGQQ 389
M+E AV ALE LYS P+K EL +AREIFAFLR NGQG+VL VP V+G +LD+VAL IT RGGVRRVQ++ LW EV + LG +QTLF +S+HYKNFLYG+EQA A VG Q+
Sbjct: 1 MDERAVAALESLYSGPIKAGELVRAREIFAFLRGNGQGAVLRDVPMVNG--KLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR---HAGVGTQR 118 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig132.2385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig132.2385.1 >prot_F-serratus_M_contig132.2385.1 ID=prot_F-serratus_M_contig132.2385.1|Name=mRNA_F-serratus_M_contig132.2385.1|organism=Fucus serratus male|type=polypeptide|length=753bp MMEENAVVALEGLYSDPMKVRELAQAREIFAFLRANGQGSVLEKVPSVDGback to top mRNA from alignment at F-serratus_M_contig132:307438..336194- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig132.2385.1 ID=mRNA_F-serratus_M_contig132.2385.1|Name=mRNA_F-serratus_M_contig132.2385.1|organism=Fucus serratus male|type=mRNA|length=28757bp|location=Sequence derived from alignment at F-serratus_M_contig132:307438..336194- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig132:307438..336194- >mRNA_F-serratus_M_contig132.2385.1 ID=mRNA_F-serratus_M_contig132.2385.1|Name=mRNA_F-serratus_M_contig132.2385.1|organism=Fucus serratus male|type=CDS|length=4518bp|location=Sequence derived from alignment at F-serratus_M_contig132:307438..336194- (Fucus serratus male)back to top |