mRNA_F-serratus_M_contig132.2379.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig132.2379.1
Unique NamemRNA_F-serratus_M_contig132.2379.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig132.2379.1 vs. uniprot
Match: A0A6H5KE80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE80_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 4.270e-112
Identity = 176/201 (87.56%), Postives = 189/201 (94.03%), Query Frame = 1 
Query:  313 MSRRTALDSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGVPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMNSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVARAYAEEIGAMFVETSAKTDTQVQDVFVELSKRLPKREPAQPAADT-LHLDSTGGASSMCC 912
            MSRR ++DS+SREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDG PMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKM+SFRTLKEWINELQAQGPQDIAIA+AGNKRDLES+REVESS+A+AYA+EIGAMFVETSAK  T VQD+FVELSKRLPKREP  PA+   L+LDS+G ASS CC
Sbjct:    1 MSRRGSMDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQREVESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLPKREPLPPASGVDLNLDSSG-ASSSCC 200
[Close]
BLAST of mRNA_F-serratus_M_contig132.2379.1 vs. uniprot
Match: A0A7S2SUM8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUM8_9STRA)

HSP 1 Score: 263 bits (672), Expect = 6.210e-82
Identity = 129/193 (66.84%), Postives = 161/193 (83.42%), Query Frame = 1 
Query:  334 DSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGVPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMNSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVARAYAEEIGAMFVETSAKTDTQVQDVFVELSKRLPKREPAQPAADTLHLDSTGGASSMCC 912
            D ++REVKVVLLGDTGVGKSSLV RF+TN FK Y ESTIGASFMSK+IMVDG P+KFQIWDTAGQEKYHSLAPMYY+GA AAIVVYDITK ++F+TLK+W+ EL++QGP++I IA+AGNK DLESEREV+++ A++YA  IGA F+ETSAKT   V ++F  +SK+LP++E A    + L+L +  G+S  CC
Sbjct:    6 DQRAREVKVVLLGDTGVGKSSLVLRFITNEFKQYQESTIGASFMSKLIMVDGSPIKFQIWDTAGQEKYHSLAPMYYKGAAAAIVVYDITKESTFQTLKDWVAELRSQGPENIVIAVAGNKSDLESEREVDTATAQSYAHSIGASFLETSAKTKANVDEIFSNISKQLPEQERAGQYHNKLNLKAGKGSSGGCC 198
[Close]
BLAST of mRNA_F-serratus_M_contig132.2379.1 vs. uniprot
Match: D8LEW7_ECTSI (Rab22, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW7_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 7.430e-80
Identity = 126/134 (94.03%), Postives = 132/134 (98.51%), Query Frame = 1 
Query:  313 MSRRTALDSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGVPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMNSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESER 714
            MSRR ++DS+SREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDG PMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKM+SFRTLKEWINELQAQGPQDIAIA+AGNKRDLES+R
Sbjct:    1 MSRRGSMDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQR 134
[Close]
BLAST of mRNA_F-serratus_M_contig132.2379.1 vs. uniprot
Match: F0WNT1_9STRA (Rab5 family GTPase putative n=3 Tax=Albugo TaxID=65356 RepID=F0WNT1_9STRA)

HSP 1 Score: 257 bits (657), Expect = 1.080e-79
Identity = 132/193 (68.39%), Postives = 154/193 (79.79%), Query Frame = 1 
Query:  340 KSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGVPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMNSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVARAYAEEIGAMFVETSAKTDTQVQDVFVELSKRLPKREPAQPAADTLHLDSTGGAS--SMCC 912
            K+REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKMIMV+  P+K+QIWDTAGQEKYHSLAPMYYRGA AAIVVYDIT+  S  TLK W+ EL+  GP++I IAIAGNK DLE +REV S+ A+AYA+EIGA+F+ETSAK DT V D+F+ +SK+LP       A   + LD  GG    + CC
Sbjct:    7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIMVENTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLATLKNWVKELKQLGPENIVIAIAGNKSDLEDKREVPSAQAKAYADEIGALFIETSAKEDTNVSDLFISISKQLPTAAAETNALPEI-LDPYGGVQQKNRCC 198
[Close]
BLAST of mRNA_F-serratus_M_contig132.2379.1 vs. uniprot
Match: D0N0I0_PHYIT (Rab5 family GTPase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N0I0_PHYIT)

HSP 1 Score: 255 bits (652), Expect = 6.460e-79
Identity = 133/196 (67.86%), Postives = 155/196 (79.08%), Query Frame = 1 
Query:  334 DSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGVPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMNSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVARAYAEEIGAMFVETSAKTDTQVQDVFVELSKRLPKREPAQPAADTLHLDSTGGA---SSMCC 912
            +SK+REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKMI+V+  P+K+QIWDTAGQEKYHSLAPMYYRGA AAIVVYDIT+  S  TLK W+ EL+  GP +I IAIAGNK DLE +REV +S ARAYA EIGA+F+ETSAK DT V D+F+++S+ LP       A   + +D  GG    SS CC
Sbjct:    6 NSKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIVVNDTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEEKREVPASQARAYAGEIGALFIETSAKEDTNVSDLFIQISQALPTASAESNALPEI-VDPYGGGKKKSSGCC 200
[Close]
BLAST of mRNA_F-serratus_M_contig132.2379.1 vs. uniprot
Match: K3X978_GLOUD (Uncharacterized protein n=22 Tax=Oomycota TaxID=4762 RepID=K3X978_GLOUD)

HSP 1 Score: 253 bits (647), Expect = 3.480e-78
Identity = 132/195 (67.69%), Postives = 153/195 (78.46%), Query Frame = 1 
Query:  337 SKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGVPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMNSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVARAYAEEIGAMFVETSAKTDTQVQDVFVELSKRLPKREPAQPAADTLHLDSTGGA---SSMCC 912
            SK+REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKMI+V+  P+K+QIWDTAGQEKYHSLAPMYYRGA AAIVVYDIT+  S  TLK W+ EL+  GP +I IAIAGNK DLE +REV +S ARAYAEEIGA+F+ETSAK D  V D+F+++S+ LP       A   + +D  GG    S  CC
Sbjct:    6 SKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIVVNDTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEEKREVPASQARAYAEEIGALFIETSAKEDRNVSDLFIQISQALPTASNESNALPEI-VDPYGGGKKKSGGCC 199
[Close]
BLAST of mRNA_F-serratus_M_contig132.2379.1 vs. uniprot
Match: A0A067CI89_SAPPC (Uncharacterized protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CI89_SAPPC)

HSP 1 Score: 244 bits (623), Expect = 1.230e-74
Identity = 129/198 (65.15%), Postives = 151/198 (76.26%), Query Frame = 1 
Query:  337 SKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGVPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMNSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVARAYAEEIGAMFVETSAKTDTQVQDVFVELSKRLPKREPAQPAADTLHL----DSTGGASSM--CC 912
            +K+REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKM++V    +K+QIWDTAGQEKYHSLAPMYYRGA AAIVVYDIT+  S +TLK W+ EL+  GP +I IAIAGNK DL+ +REV S  A+AYA+EIGA+F+ETSAK DT V D+F  +S++LP      PA D   L    D  GG      CC
Sbjct:    5 TKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLQTLKNWVKELKQLGPDNIVIAIAGNKSDLKDKREVSSETAKAYADEIGAVFIETSAKEDTNVSDLFKTISQQLPS-----PAGDNNALPEIVDPYGGGKKKGGCC 197
[Close]
BLAST of mRNA_F-serratus_M_contig132.2379.1 vs. uniprot
Match: A0A7S1CIP5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIP5_9STRA)

HSP 1 Score: 246 bits (629), Expect = 2.530e-74
Identity = 120/167 (71.86%), Postives = 143/167 (85.63%), Query Frame = 1 
Query:  337 SKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGVPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMNSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVARAYAEEIGAMFVETSAKTDTQVQDVFVELSKRLP 837
            +++REVKVVLLGDTGVGKSSLV RFVTNNFKPYSESTIGASFM+KM+++D  P+K+QIWDTAGQEKYHSLAPMYYRGA AAIVVYDIT+  SF TLK W+ EL+  GP+DI IAIAGNK DL  +REVE   AR YA  IGA+++ETSAKTD+ V+ +FV+++ RLP
Sbjct:   87 AEAREVKVVLLGDTGVGKSSLVLRFVTNNFKPYSESTIGASFMAKMMIIDSTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRAASFATLKNWVRELKQLGPEDIVIAIAGNKSDLAPQREVEEEDAREYARSIGALYIETSAKTDSNVKQLFVDIAMRLP 253
[Close]
BLAST of mRNA_F-serratus_M_contig132.2379.1 vs. uniprot
Match: A0A3R7AA57_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AA57_9STRA)

HSP 1 Score: 244 bits (624), Expect = 3.560e-72
Identity = 133/213 (62.44%), Postives = 157/213 (73.71%), Query Frame = 1 
Query:  292 DLLLGERMSRRTALDSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGVPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMNSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVARAYAEEIGAMFVETSAKTDTQVQDVFVELSKRLPKREPAQPAADTLHLDS------TGGASSMCC 912
            D+ L   MS   A  +K+REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKM++V    +K+QIWDTAGQEKYHSLAPMYYRGA AAIVVYDIT+  S  TLK W+ EL+  GP +I IAIAGNK DL+ +REV S+ A+AYA+EIGA+F+ETSAK DT V D+F  +S++LP      PA D   L        +G A   CC
Sbjct:  185 DVRLATNMS---ADGTKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLVTLKNWVKELKQLGPDNIVIAIAGNKSDLDDKREVSSATAKAYADEIGAVFIETSAKEDTNVLDLFKTISQQLPS-----PAGDNHALPEIVDPYGSGKAKGGCC 389
[Close]
BLAST of mRNA_F-serratus_M_contig132.2379.1 vs. uniprot
Match: F0Y0I1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0I1_AURAN)

HSP 1 Score: 229 bits (585), Expect = 5.690e-69
Identity = 119/195 (61.03%), Postives = 140/195 (71.79%), Query Frame = 1 
Query:  328 ALDSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGVPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMNSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVARAYAEEIGAMFVETSAKTDTQVQDVFVELSKRLPKREPAQPAADTLHLDSTGGASSMCC 912
            A  +++RE KVVLLGDTGVGKSSL  R+VTN FKPYSESTIGASFMSKMI+VDG P K QIWDTAGQEKYHSLAPMYYRGA AAI+V+DITK  S   LK W+ ELQ QGP+ +A+AIAGNK DL   R V +  A+A+A +IGA++ ETSAK DT V  +F +L +R P    A+   D   L         CC
Sbjct:    3 AQPTRTRECKVVLLGDTGVGKSSLAQRYVTNTFKPYSESTIGASFMSKMILVDGAPCKCQIWDTAGQEKYHSLAPMYYRGAAAAILVFDITKPASLDKLKAWVRELQTQGPERLALAIAGNKADLADRRAVPADDAKAFAADIGALYCETSAKDDTNVSQLFADLVRRAPAGGAAR-TDDAFDLGHDAAPRRGCC 196
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig132.2379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE80_9PHAE4.270e-11287.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SUM8_9STRA6.210e-8266.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LEW7_ECTSI7.430e-8094.03Rab22, RAB family GTPase n=1 Tax=Ectocarpus silicu... [more]
F0WNT1_9STRA1.080e-7968.39Rab5 family GTPase putative n=3 Tax=Albugo TaxID=6... [more]
D0N0I0_PHYIT6.460e-7967.86Rab5 family GTPase, putative n=2 Tax=Phytophthora ... [more]
K3X978_GLOUD3.480e-7867.69Uncharacterized protein n=22 Tax=Oomycota TaxID=47... [more]
A0A067CI89_SAPPC1.230e-7465.15Uncharacterized protein n=7 Tax=Saprolegniaceae Ta... [more]
A0A7S1CIP5_9STRA2.530e-7471.86Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A3R7AA57_9STRA3.560e-7262.44Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
F0Y0I1_AURAN5.690e-6961.03Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig132contigF-serratus_M_contig132:175876..181612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.1
Seed ortholog evalue3.5e-66
Seed eggNOG ortholog4792.ETI52048
Preferred nameRAB31
KEGG koko:K07891
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000166,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005886,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006897,GO:0006898,GO:0006955,GO:0006996,GO:0007032,GO:0008104,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010256,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0030139,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031623,GO:0031901,GO:0031982,GO:0031984,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032588,GO:0032868,GO:0032869,GO:0032870,GO:0032940,GO:0033036,GO:0034613,GO:0035639,GO:0036094,GO:0036230,GO:0042119,GO:0042221,GO:0042886,GO:0043001,GO:0043112,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0043434,GO:0044237,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0045335,GO:0046903,GO:0048193,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051716,GO:0061951,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090066,GO:0090150,GO:0090382,GO:0097159,GO:0097367,GO:0097494,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0098876,GO:0099503,GO:1901265,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990778
EggNOG free text desc.Rab subfamily of small GTPases
EggNOG OGs3Q9EC@4776,KOG0092@1,KOG0092@2759
COG Functional cat.U
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131
Exons5
Model size1648
Cds size603
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929282.3326588-UTR-F-serratus_M_contig132:175875..1761871622929282.3326588-UTR-F-serratus_M_contig132:175875..176187Fucus serratus maleUTRF-serratus_M_contig132 175876..176187 +
1690962782.795343-UTR-F-serratus_M_contig132:175875..1761871690962782.795343-UTR-F-serratus_M_contig132:175875..176187Fucus serratus maleUTRF-serratus_M_contig132 175876..176187 +
1622929282.4165442-UTR-F-serratus_M_contig132:180879..1816121622929282.4165442-UTR-F-serratus_M_contig132:180879..181612Fucus serratus maleUTRF-serratus_M_contig132 180880..181612 +
1690962782.8500707-UTR-F-serratus_M_contig132:180879..1816121690962782.8500707-UTR-F-serratus_M_contig132:180879..181612Fucus serratus maleUTRF-serratus_M_contig132 180880..181612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929282.3460803-CDS-F-serratus_M_contig132:176187..1762541622929282.3460803-CDS-F-serratus_M_contig132:176187..176254Fucus serratus maleCDSF-serratus_M_contig132 176188..176254 +
1690962782.8091562-CDS-F-serratus_M_contig132:176187..1762541690962782.8091562-CDS-F-serratus_M_contig132:176187..176254Fucus serratus maleCDSF-serratus_M_contig132 176188..176254 +
1622929282.3580463-CDS-F-serratus_M_contig132:179106..1791791622929282.3580463-CDS-F-serratus_M_contig132:179106..179179Fucus serratus maleCDSF-serratus_M_contig132 179107..179179 +
1690962782.8168604-CDS-F-serratus_M_contig132:179106..1791791690962782.8168604-CDS-F-serratus_M_contig132:179106..179179Fucus serratus maleCDSF-serratus_M_contig132 179107..179179 +
1622929282.3745832-CDS-F-serratus_M_contig132:179585..1796401622929282.3745832-CDS-F-serratus_M_contig132:179585..179640Fucus serratus maleCDSF-serratus_M_contig132 179586..179640 +
1690962782.8284636-CDS-F-serratus_M_contig132:179585..1796401690962782.8284636-CDS-F-serratus_M_contig132:179585..179640Fucus serratus maleCDSF-serratus_M_contig132 179586..179640 +
1622929282.389382-CDS-F-serratus_M_contig132:180177..1803841622929282.389382-CDS-F-serratus_M_contig132:180177..180384Fucus serratus maleCDSF-serratus_M_contig132 180178..180384 +
1690962782.835507-CDS-F-serratus_M_contig132:180177..1803841690962782.835507-CDS-F-serratus_M_contig132:180177..180384Fucus serratus maleCDSF-serratus_M_contig132 180178..180384 +
1622929282.4023423-CDS-F-serratus_M_contig132:180678..1808791622929282.4023423-CDS-F-serratus_M_contig132:180678..180879Fucus serratus maleCDSF-serratus_M_contig132 180679..180879 +
1690962782.8427186-CDS-F-serratus_M_contig132:180678..1808791690962782.8427186-CDS-F-serratus_M_contig132:180678..180879Fucus serratus maleCDSF-serratus_M_contig132 180679..180879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig132.2379.1prot_F-serratus_M_contig132.2379.1Fucus serratus malepolypeptideF-serratus_M_contig132 176188..180879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig132.2379.1

>prot_F-serratus_M_contig132.2379.1 ID=prot_F-serratus_M_contig132.2379.1|Name=mRNA_F-serratus_M_contig132.2379.1|organism=Fucus serratus male|type=polypeptide|length=201bp
MSRRTALDSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASF
MSKMIMVDGVPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMNS
FRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVARAYAEEIGA
MFVETSAKTDTQVQDVFVELSKRLPKREPAQPAADTLHLDSTGGASSMCC
*
back to top

mRNA from alignment at F-serratus_M_contig132:175876..181612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig132.2379.1 ID=mRNA_F-serratus_M_contig132.2379.1|Name=mRNA_F-serratus_M_contig132.2379.1|organism=Fucus serratus male|type=mRNA|length=5737bp|location=Sequence derived from alignment at F-serratus_M_contig132:175876..181612+ (Fucus serratus male)
GCTGACTCCTTGGTACTTCCGGTCACGTCCACCATCGGTAGCTAGGCGTG
GAATAGTTTAACAAGATTAACCCCCTTGAATTATATTCTAGTTCCTGGCG
CTCACGCTACACGAGAACGGGGGACAAGGAATAGGCGATCTCCAAACTTC
AATTTCGTGCCAGCTCAACTTGTTGCTTCCCATCACGCCAACCGGGCTGG
GGAACTGCATTCGGAGGACAAGCGTCCTACCATAAGCTTAGTGTGTATAT
ACCAGCGCTTCAGAATTACGCTGGAAGTGCTCTGATCTAAAGACTTATTG
CTGGGCGAAAGGATGAGCCGAAGGACTGCCCTGGATTCGAAATCTCGAGA
AGTAAAGGTCGTCCTTCTCGGAGACACAGGTTTGAGCCTTCTATAAGTTT
TTGTCTCCTAATATGCATCACATATACTCTAGCAGAGTATGGATCAACCG
GGTAAGGTTGCCAGTCCTGCTCGTGGTCAGCTGAACAGGAAAAATGAATA
CTTCCCTGTCCCGGTTCGCGCTTGAGAATTTGGTCACGCGACACGGGTTC
GGCAGTCCCGTCCCCCGTCAGCCTGCTCATTCTCCACACCCGTGCTAATC
TGGTGCTTACTCACGGGATTCCTCCCGATTTCTGCGGCGGCGTCCATTTG
TGTTATACCTATGCCATTGGGTCAGTCCCGTTTTTATCGGGTCACGCAAT
TGCGTACCGATGGCGTTCGCTGTCGTGAGTCCGCCGGCACAGGGCCAGTA
GTTCTCAAGGTAGTCCCAGTAACGGGTGGTTCCTTAGCCGGTATCACCAT
GGACCAATTGATGTGCGCCTCTCTTTCCCCACACATACTGTTGGTATGAA
GTGGTTACAGTATATTGTTAGTATCGAACGAAGATTAGTACCCCCGGGCT
CGTACAGATTTTGTAAAGCCTGGAGCAGTGGGTATACTGCTGGTGTGCAG
ACAGGCAGAGGCTGATCACAGGTACAATACTCGAATATTTTTCTATTAAC
ACAGAGAGCCAATCGCCGGTACTTTCAACATGCCCATTTGAAATCAATAG
TGGGTGTGGGAAAGAGAGGCGCATATTATTTGGGCCATGGTGACCTGCCA
AGGCAGCACTCGTTCGGAACTACCTTGAGGTTTACTGGCCCTGTGCCGGC
GGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGATCCGATCAA
CTCGGGACTGACCCGATGGCGTATATGACGGTTTTATATAAATATATGGA
CGCCGCCGCGGAACTCGGGAGGAATGTCGTAAGTAAAAATTCAACCATTG
GTTGACGAGTTGTAAGAGTGCCGAACTTGCATCGCGATAAAAATTGTAAG
GCGTGAACCGGGGAGAGATGGGAAGATCCTTTGTGACCACAGGCAGGATG
GTAATTAGAGGTCCATCGGCTATCAGTGTGATAAAAAAACAAACAAAAAA
AACAAACATTAAGACAGAGTATAAAGAATGAGCAGGCTGACGCAGGACGG
GACGGCTGAACCCGTCTCGCGAGGCCAAATTTTAAGGCACGTGCGGGGAC
AGGGGAATATTCATTTTCCCTGTTCAGCTGACCACTAGCAGGATTGGCAA
CCTTACACCCTTACACGTTTGATCCGTACTCTGCTAGACTATATGTGGTG
ACTATACCAGGTACATAGGTACTGTGTGCTGTAAAGGCTCGTAAAAAGTG
AACGACTCTCATTTGCCTGTTTTTTCTGTCTAGAATCACCAACATCTTTA
CCTAAATCTGAACGCATCTACTACTGATTGTTTGTACTGTACAACCTTCT
GAGCATCCTCCGGACAGGGGGAAATTTATTTAAACTCGGGTGTAAGTTTT
GTCAATGTTGTTCGTATGGAAAAAAATAAAAGCAACAAGCTCAGAAGGTC
TAGGTGCGTTCTGTATTTTCTTCAAACAAGAGTATAGTAGCAGTTGTACT
ACAGATCAGTAGTCTAGATTCGGTTTGAGTGTAGAGAATGAGCGGGCTGG
CGTGGAACGGGACGGCCGAATCTGTCTCGCGAGACCAGATTCTCAGGCGG
CGCGAACGAGGACATGGGGAAAATATTTTCCTTCTTCAACTTACCACGAG
CAGGATTGGTAAAACCATTCCCGGTTGACAGTTGATCCATTTTCTGCTGA
AAGTGATAACGATACATACATTAAAATCTACTTGTACCAGTACTAAATAT
ATACTGGAGTATGTTCTAAAAATAAAGTATAACCTTGCCTCGTAGGTCTA
CTGCTCTTCTAATGCTCAGGGCCATTCCGTAGCACATTATTTTCCCGTCG
CACAGCGGACATCTAAACTCAAGGTAAAGGTGCCGAAACCCTTAAAATTT
ATTGCGCATGGCGAAACAAGGGCCTTGCATCAAAAGAAACCCCAGAGGGC
ATATATATATATATATATAATCTTTCTCCTTAGTCCTGCTAGTTTGTCGG
GCAGCCAGCCCGAATCCGGCGTGTTGATACCTCCTGCGGCGAAATCACAT
TTGTGTTACGGTATTCTCCCAGTAATCAAGATCAGCGGTTTAGAACAGAC
CGCAGTGCACCACCATCGACGCTCGTAATCCGTAGCGATAATTGTTGGAG
AGCATCTTCGCAACTCCAATGGAGCGAGGCGTCGCATCCATTTTTCATGG
ACAAGAGAAACAAAACATTCACTCTCCCAGTACGGATCCACCTGCCAGCT
GCTGCTAGCGCACATGCTGCGTCAGAGACGGTCGGTCTCTTTTCTCATTT
GGCAACACTTTTCTGAAGGACCTGAAGGGGTTCTCGCCGCCTGCTGTTTT
GTTGTGATTTCGATAACGCCGCTCCGTTTTCCGTCATGGACGAAAATTTG
ATGAACGAGTGTAAAAAAAAAGAAGGGGAAAAAAATTCAAACCATAACGA
GTTGCGCTAATATTTTTTGATGCACGTAATGCATATCTGGTAAGTACGAA
GTGCGATTGCATACCGAAAAGCACTGTGCCCTTCGCGGGTGAAACGCGTT
GAATGTCTTCGGGTTCAGCGCCAGACGAATGTTGAAACACGTTGAGGCGA
GACCATCGGGATTCAGACCCTTTCGTAACGTTGTACAGCCGCACCAGGGT
TGTTGGTGTCACGGTCCCGCGACGCGCGTAGCTCTAGAAGCGTCTACTGT
CCCTCGTTTCATCCTCGGTGACAGGCCGACCATATCGTCCGTTGATTTTT
GCCGCGACTTGCTGTTTGATCGACGCGTCAGGGGTGGGGAAATCAAGCCT
GGTGCATCGGTTTGTCACGAACAACTTCAAGCCGTACAGCGAGAGCACCA
TCGGGTAGGCCCCCTGCTTCCGCCCGTCCAGAGAAAGAAAGAAGCCCTCC
CTTACTGTGTATTACTGCGGATGCGATAGCGAGTACCTGATGTTGTCTTT
TTTTGTACTGGTATTATACTTACCTGGATTGATGATTGATCAGCAGAGTT
TTCTTCTTTTCGTACTACGTCGTGATCTCCATCCATGCGCTGTGACGTGC
CGTTAGGGTGCCGTTAGCTTTAGAAGTCGCTCTACTACTTAGTAGTTGCT
GTCGGCATTATGCCTGATCCGATCCACGGATACGCATGGTTCGTCTGATG
TTCTCTTGAGAAGCAAGAATCATGCCCCCGTCTTGTCTCTCTCTTTCGGC
CTTGATCCACTATCATCCACTATCATCCCTGCTGCCTTTGCCCCCCCACC
CCCCCCGCAGCGCTTCATTCATGTCCAAGATGATCATGGTGGATGGCGTG
CCGATGAAGTTCCAGGTAAGCTCTTTCGCAATTCCTTTTCTTACAGGAGT
CTACTGTTGTATTACAAAGCGTCAAGCTGCGTTAGGCATGCAGGGGCCGG
GAACGGCGTTCGCTTATTCTTCCGTTTCGGAATGTGTGTGTGTGTGTGTA
TTTATTAAATTGCGCATGACCGCGCAATCCGGCCCTGTCATCCTATGCCA
CTCGCATTGATCCTCCCAAGGGGGGATCAATGTGTGTGTGTTTTCCCCCC
GCATTCTACTGCGCTTTTGATGCTTGAGAACCGTTCGATGTCGTTGTCGA
GCATTGCCGTTATCTTCCGCGTTTGAGGAAGATGACGTACGTGCTTTCGG
GGAATCCTGATTCGATTCCGCACAGACGAGCGCAAAAAGGCATGTGGCGT
CTGCTCGTGGTCGTATTCTCACTCGATCAGGGTTCTTACACATGTTACAC
TATGCAAAGTACAGGAGAATAACTATAAGAGATTTCTGAGGGCGTTTAAA
AGACTATGACGCCTCTCGCCGTCCAAACCCGCCCCTGACGCGAGCACTCC
AGATCTGGGACACCGCGGGGCAGGAGAAGTACCATAGTCTAGCTCCGATG
TACTACAGAGGGGCTGGAGCGGCAATCGTGGTGTACGACATCACCAAGAT
GAACTCCTTCCGCACGTTAAAGGAGTGGATCAACGAGCTGCAGGCGCAGG
GGCCGCAAGACATTGCGATCGCAATCGCCGGCAACAAGCGCGATCTGGAG
TCGGAACGAGTAAGTCTGCCCTTTTTTGCGTGTGTACCGCCAGCGTGCGG
GGAACATTCACTCGTGTACTGAAAACACACTTAAACCTTAGACCTAAAAG
CCCCGCGCGCTTGCGACAACGTTAAGGCAAGGACTGCTTGGAAGCGGTCA
TCACCAGACCGGGTTTTGTGAAGTGCGAAACTTGAGCAAATACAACGTAC
CGCTCCTCCGGCCGTGCAGTCAACGCCTCGCAGGTCATTTCCAATGTTCC
AGTCCCGAATGTTGATTAATTTTCCTTGTTTCGTTTTGTCCTTTGTGCAT
CAGGAGGTAGAGTCCTCCGTCGCTCGGGCGTACGCGGAGGAAATTGGAGC
GATGTTCGTGGAGACCAGCGCGAAGACCGATACGCAAGTTCAGGACGTGT
TCGTGGAACTCAGCAAACGCCTCCCCAAGAGAGAACCCGCTCAGCCTGCT
GCCGACACGCTGCATCTTGATTCCACCGGCGGTGCATCATCGATGTGCTG
TTGACCTGATCTGTGGTTTGGATTTCGCTATTATATATTTTCTTGACAAA
TTCTCACGTGTTCTACCTCCCGTTATATCTCACGGTCAAATTAGTTGGTA
AACGTGTGGCCCGACATACTTTGAAGGTTCGTCCCGGGAGGCGTTTGCCG
CCTGTCTCGAGTGCGCGCCATAGACGGCAATGGTGAGAGACGTCGGGGAG
ATGCTGCGAGCAGGTAGCTTTCGTGTCTTTTTTCGAGGATGCGGTAGCCG
TGGCATGGTTTTCGCTGTAGTCCTGAAACCTATTTTGTGCCGCGCGCTCC
ACCTAGGGCGTCGTTGCTGGAGCGGTGAGAATTGTATGTATACAAGCACT
TTTTGTAAATCAAGTATCCAGATCTGCGGTATGACAGGACTCGGGGCTCG
CTCTGGGTCGAAGGTGCTCGTATCTTGCGTTGTTGGTTGTGAGCGATGGA
TGCTCTCCTGTTTGTTTTCAGCGTCTTGTGCCGCGGGCAGAGCTCGTGTC
CATGACGTACTGGGAGAGTGCCCAGCTGCGGCTGTAATGCTTCGGCCCGT
TACAGTCTCCCTTACGCCTCGTGTCTGCCCTGCGTCGATTCGATATCCTG
TACCTTTGTAATCAAGATCTTCATAAAGAATGCGTAAATGTAGCACTCAA
CGTTTTTTATTAAATATTTCCACACTTTTTATCGCGTCCCTTTTCACAAG
ATGTAATCGGACCCCCCCCGTCCCTCCCTCTAATTCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig132:175876..181612+

>mRNA_F-serratus_M_contig132.2379.1 ID=mRNA_F-serratus_M_contig132.2379.1|Name=mRNA_F-serratus_M_contig132.2379.1|organism=Fucus serratus male|type=CDS|length=1206bp|location=Sequence derived from alignment at F-serratus_M_contig132:175876..181612+ (Fucus serratus male)
ATGAGCCGAAGGACTGCCCTGGATTCGAAATCTCGAGAAGTAAAGGTCGT
CCTTCTCGGAGACACAGATGAGCCGAAGGACTGCCCTGGATTCGAAATCT
CGAGAAGTAAAGGTCGTCCTTCTCGGAGACACAGGGGTGGGGAAATCAAG
CCTGGTGCATCGGTTTGTCACGAACAACTTCAAGCCGTACAGCGAGAGCA
CCATCGGGGGTGGGGAAATCAAGCCTGGTGCATCGGTTTGTCACGAACAA
CTTCAAGCCGTACAGCGAGAGCACCATCGGCGCTTCATTCATGTCCAAGA
TGATCATGGTGGATGGCGTGCCGATGAAGTTCCAGCGCTTCATTCATGTC
CAAGATGATCATGGTGGATGGCGTGCCGATGAAGTTCCAGATCTGGGACA
CCGCGGGGCAGGAGAAGTACCATAGTCTAGCTCCGATGTACTACAGAGGG
GCTGGAGCGGCAATCGTGGTGTACGACATCACCAAGATGAACTCCTTCCG
CACGTTAAAGGAGTGGATCAACGAGCTGCAGGCGCAGGGGCCGCAAGACA
TTGCGATCGCAATCGCCGGCAACAAGCGCGATCTGGAGTCGGAACGAATC
TGGGACACCGCGGGGCAGGAGAAGTACCATAGTCTAGCTCCGATGTACTA
CAGAGGGGCTGGAGCGGCAATCGTGGTGTACGACATCACCAAGATGAACT
CCTTCCGCACGTTAAAGGAGTGGATCAACGAGCTGCAGGCGCAGGGGCCG
CAAGACATTGCGATCGCAATCGCCGGCAACAAGCGCGATCTGGAGTCGGA
ACGAGAGGTAGAGTCCTCCGTCGCTCGGGCGTACGCGGAGGAAATTGGAG
CGATGTTCGTGGAGACCAGCGCGAAGACCGATACGCAAGTTCAGGACGTG
TTCGTGGAACTCAGCAAACGCCTCCCCAAGAGAGAACCCGCTCAGCCTGC
TGCCGACACGCTGCATCTTGATTCCACCGGCGGTGCATCATCGATGTGCT
GTTGAGAGGTAGAGTCCTCCGTCGCTCGGGCGTACGCGGAGGAAATTGGA
GCGATGTTCGTGGAGACCAGCGCGAAGACCGATACGCAAGTTCAGGACGT
GTTCGTGGAACTCAGCAAACGCCTCCCCAAGAGAGAACCCGCTCAGCCTG
CTGCCGACACGCTGCATCTTGATTCCACCGGCGGTGCATCATCGATGTGC
TGTTGA
back to top