mRNA_F-serratus_M_contig132.2375.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig132.2375.1
Unique NamemRNA_F-serratus_M_contig132.2375.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig132.2375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig132contigF-serratus_M_contig132:81575..82517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size608
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig132.2375.1prot_F-serratus_M_contig132.2375.1Fucus serratus malepolypeptideF-serratus_M_contig132 81630..82294 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929280.2796302-UTR-F-serratus_M_contig132:81574..816291622929280.2796302-UTR-F-serratus_M_contig132:81574..81629Fucus serratus maleUTRF-serratus_M_contig132 81575..81629 +
1690962782.0184028-UTR-F-serratus_M_contig132:81574..816291690962782.0184028-UTR-F-serratus_M_contig132:81574..81629Fucus serratus maleUTRF-serratus_M_contig132 81575..81629 +
1622929280.3176374-UTR-F-serratus_M_contig132:82294..825171622929280.3176374-UTR-F-serratus_M_contig132:82294..82517Fucus serratus maleUTRF-serratus_M_contig132 82295..82517 +
1690962782.0543795-UTR-F-serratus_M_contig132:82294..825171690962782.0543795-UTR-F-serratus_M_contig132:82294..82517Fucus serratus maleUTRF-serratus_M_contig132 82295..82517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929280.2906816-CDS-F-serratus_M_contig132:81629..816571622929280.2906816-CDS-F-serratus_M_contig132:81629..81657Fucus serratus maleCDSF-serratus_M_contig132 81630..81657 +
1690962782.0289612-CDS-F-serratus_M_contig132:81629..816571690962782.0289612-CDS-F-serratus_M_contig132:81629..81657Fucus serratus maleCDSF-serratus_M_contig132 81630..81657 +
1622929280.3011837-CDS-F-serratus_M_contig132:81992..822941622929280.3011837-CDS-F-serratus_M_contig132:81992..82294Fucus serratus maleCDSF-serratus_M_contig132 81993..82294 +
1690962782.0382748-CDS-F-serratus_M_contig132:81992..822941690962782.0382748-CDS-F-serratus_M_contig132:81992..82294Fucus serratus maleCDSF-serratus_M_contig132 81993..82294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig132.2375.1

>prot_F-serratus_M_contig132.2375.1 ID=prot_F-serratus_M_contig132.2375.1|Name=mRNA_F-serratus_M_contig132.2375.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MVQGLDDDNGRRRRMDGWHDDRACSIPPVNFAAASVRRRCSPLILPLPKT
WACFHRNQPTTTSKMYIRAASFLIIIEQVNRASALDFSRDVKSRRGSTHP
AVRSSIWIP*
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mRNA from alignment at F-serratus_M_contig132:81575..82517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig132.2375.1 ID=mRNA_F-serratus_M_contig132.2375.1|Name=mRNA_F-serratus_M_contig132.2375.1|organism=Fucus serratus male|type=mRNA|length=943bp|location=Sequence derived from alignment at F-serratus_M_contig132:81575..82517+ (Fucus serratus male)
CGCTACGAGACCCTGAGAACCGGCAGGCACAGCTACGAGATGACGTGACC
GAGCGATGGTGCAAGGGTTGGATGATGACAATGGTATTTGTATTGGTAAT
CGTAATGAAATTATAATAGCAATGACGTTGTCCTGACGGTGGTAAGGTAC
GATGTGCCTGCTGATCATGACGGACGGTGGCACGCTGTAGTAGCTCATTT
CATTCTGGAGACGTATGTTAGAATTATATACCAAGTAAACTGTATATTAC
GGAGTACTCCATATATATTATCGTGCTTCTGATGGCGGCAGCTTCTTGGA
ATAAATTAAAATAAAATCACGTCATTGGGAGGTTGAAAGCCGAGTGGACG
CCTACCTACAGTAGTACTCCATTATGTTGTCTTTTGTGTTGCCGTTTTTA
ACCCTGACCACGGCGAAGGACGCAGAAGGCGGATGGATGGGTGGCACGAC
GATAGGGCATGTTCGATCCCTCCCGTCAACTTCGCAGCGGCGAGCGTTCG
GCGACGGTGCTCACCGCTGATACTTCCTCTTCCGAAAACGTGGGCTTGTT
TTCACCGAAATCAGCCTACTACTACATCTAAAATGTACATCCGCGCCGCT
TCCTTTCTAATTATTATTGAACAAGTTAATCGGGCGTCTGCCCTCGATTT
CAGTAGGGATGTAAAAAGCAGACGCGGGAGCACTCATCCGGCGGTCAGGT
CTTCGATTTGGATACCATGAGTAGTCTCGACTAAATATATACGGTTGTTG
GGCAGTCGGGGTGTACTTCCCACGCTGCTCATGTTCGCTCTCGGAGCTAG
CGACTTGATTCGTTTGGTTGTGTACGACAGCAGCAGCTGTTTTATGTACG
TAGTGGAGATCTCAGTTGCCTCCTATGTCGTGTTGAGCGTTCGATTTGAT
GGGCCTTCAACAACTATGACGCCGTAACACAAAAACAACAACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig132:81575..82517+

>mRNA_F-serratus_M_contig132.2375.1 ID=mRNA_F-serratus_M_contig132.2375.1|Name=mRNA_F-serratus_M_contig132.2375.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig132:81575..82517+ (Fucus serratus male)
ATGGTGCAAGGGTTGGATGATGACAATGATGGTGCAAGGGTTGGATGATG
ACAATGGACGCAGAAGGCGGATGGATGGGTGGCACGACGATAGGGCATGT
TCGATCCCTCCCGTCAACTTCGCAGCGGCGAGCGTTCGGCGACGGTGCTC
ACCGCTGATACTTCCTCTTCCGAAAACGTGGGCTTGTTTTCACCGAAATC
AGCCTACTACTACATCTAAAATGTACATCCGCGCCGCTTCCTTTCTAATT
ATTATTGAACAAGTTAATCGGGCGTCTGCCCTCGATTTCAGTAGGGATGT
AAAAAGCAGACGCGGGAGCACTCATCCGGCGGTCAGGTCTTCGATTTGGA
TACCATGAGACGCAGAAGGCGGATGGATGGGTGGCACGACGATAGGGCAT
GTTCGATCCCTCCCGTCAACTTCGCAGCGGCGAGCGTTCGGCGACGGTGC
TCACCGCTGATACTTCCTCTTCCGAAAACGTGGGCTTGTTTTCACCGAAA
TCAGCCTACTACTACATCTAAAATGTACATCCGCGCCGCTTCCTTTCTAA
TTATTATTGAACAAGTTAATCGGGCGTCTGCCCTCGATTTCAGTAGGGAT
GTAAAAAGCAGACGCGGGAGCACTCATCCGGCGGTCAGGTCTTCGATTTG
GATACCATGA
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