mRNA_F-serratus_M_contig1317.2361.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1317.2361.1
Unique NamemRNA_F-serratus_M_contig1317.2361.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1317.2361.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 6.320e-75
Identity = 162/330 (49.09%), Postives = 202/330 (61.21%), Query Frame = 1 
Query:   13 GGGKDSSWVPPSEFPPGHEESPVEGGGTAAGTRCLANADESEGSGKHGDKSNGELASSNGTGHAEYLKALGPLKLRDEADPFSMDLGVTEKGDIVKVLEASAADARWVRVAYRGREDGWILSANKRGPTLVPHEDPASAAADFDAQEASHAVAAAAASVAAAENLDDRPLKSK--------------------GGNESSWVPPSEFPPGHEESSAAAGTVEVAKTGGEE----KEGSGKTLGSDPIGDSAESAGEIGRPEFMQTLGPLKIRDEPDPFSMDLGVTVTGEIVKVLEASATDTRWLRVAYRGREDGWILSANKRGPTLVPLDD 930
            GGGK  +WVPPSEFPPG E  PV  G         A+A     + + G+ S G+ A S     +EY+ ALG +K+R+EADPFSMDLG  +KGDIVKVLE S     WVRV YRGREDGW+L+ANKRGPTLVP ED  SAA +FDAQEA+ A ++  A    AE+  DRPL                       GG + +WVPPSEFPPG E+  A++G   V    G+E    K  +G+ + +    D A     I  PE++  LG +K+R+E DPFSMDLG    G+IV+VLE S     W+RV YRGREDGW+L+ANKRGPTLVP +D
Sbjct: 1217 GGGK-GAWVPPSEFPPGQEGGPVSSGDGGDALVKEASAGSVVDAARQGNDSAGDEAVS-----SEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLETSEL---WVRVCYRGREDGWVLTANKRGPTLVPSEDQDSAAGEFDAQEAAFASSSGGA---VAEDPSDRPLTGAKPPPSAPTVATGDSEDRPLTGGGKGAWVPPSEFPPGEEDEPASSGGSGVV---GDEAFSVKPSAGEGVDAGGQADGAAGGAAIS-PEYLTALGFVKVREEADPFSMDLGSVKKGDIVRVLETSKL---WVRVCYRGREDGWVLTANKRGPTLVPSED 1527
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BLAST of mRNA_F-serratus_M_contig1317.2361.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 3.460e-71
Identity = 161/327 (49.24%), Postives = 188/327 (57.49%), Query Frame = 1 
Query:   13 GGGKDSSWVPPSEFPPGHEESPVEGGGTAAGTRCLANADESEGSGKHGDKSNGELASSNGTGHAEYLKALGPLKLRDEADPFSMDLGVTEKGDIVKVLEASAADARWVRVAYRGREDGWILSANKRGPTLVPHEDPASAAADFDAQEASHAVAAA-------------------AASVAAAENLDDRPLKSKGGNESSWVPPSEFPPGHEES--SAAAGTVEVAKTGGEEKEGSGKTLGSDPIGDSAESAGEIGRPEFMQTLGPLKIRDEPDPFSMDLGVTVTGEIVKVLEASATDTRWLRVAYRGREDGWILSANKRGPTLVPLDD 930
            GGGK  +WVPPSEFPPGHE     GG  +                       G+ A S     AE+  ALG +K+R+EADPFSMDLG   KGDIVKVLE S     WVRV YRGREDGW+L+ANKRGPTLVP ED ASAA +FD QEA+ A                       AA  AA    +DRPL   GG + +WVPPSEFPPG E+   S   G   + K    E        G+D  GD A S+      E+M  LG +K+R+E DPFSMDLG    G+IVKVLEAS     W+RV YRGREDGW+L+ANKRGPTLVP +D
Sbjct:  851 GGGK-GAWVPPSEFPPGHE-----GGAPSXXXXXXXXXXXXXXXXXXXXXXAGDEAVS-----AEFFTALGFVKVREEADPFSMDLGSVRKGDIVKVLETSKL---WVRVCYRGREDGWVLTANKRGPTLVPSEDQASAAGEFDEQEAAFAANGGGALPEDPSDRPLTGAKPPPAAPTAATGASEDRPLT--GGGKGAWVPPSEFPPGQEDGPVSRGDGGDALVKKASAESVVDAPGQGNDSAGDEAVSS------EYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLEASKL---WVRVCYRGREDGWVLTANKRGPTLVPSED 1152
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1317.2361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4T0_9PHAE6.320e-7549.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7L6_ECTSI3.460e-7149.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1317contigF-serratus_M_contig1317:218712..221073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size934
Cds size930
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1317.2361.1prot_F-serratus_M_contig1317.2361.1Fucus serratus malepolypeptideF-serratus_M_contig1317 218712..221071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929278.277517-CDS-F-serratus_M_contig1317:218711..2189351622929278.277517-CDS-F-serratus_M_contig1317:218711..218935Fucus serratus maleCDSF-serratus_M_contig1317 218712..218935 +
1690962781.0593235-CDS-F-serratus_M_contig1317:218711..2189351690962781.0593235-CDS-F-serratus_M_contig1317:218711..218935Fucus serratus maleCDSF-serratus_M_contig1317 218712..218935 +
1622929278.2955356-CDS-F-serratus_M_contig1317:219335..2194201622929278.2955356-CDS-F-serratus_M_contig1317:219335..219420Fucus serratus maleCDSF-serratus_M_contig1317 219336..219420 +
1690962781.0714123-CDS-F-serratus_M_contig1317:219335..2194201690962781.0714123-CDS-F-serratus_M_contig1317:219335..219420Fucus serratus maleCDSF-serratus_M_contig1317 219336..219420 +
1622929278.3129115-CDS-F-serratus_M_contig1317:219680..2201081622929278.3129115-CDS-F-serratus_M_contig1317:219680..220108Fucus serratus maleCDSF-serratus_M_contig1317 219681..220108 +
1690962781.078978-CDS-F-serratus_M_contig1317:219680..2201081690962781.078978-CDS-F-serratus_M_contig1317:219680..220108Fucus serratus maleCDSF-serratus_M_contig1317 219681..220108 +
1622929278.3319635-CDS-F-serratus_M_contig1317:220535..2206201622929278.3319635-CDS-F-serratus_M_contig1317:220535..220620Fucus serratus maleCDSF-serratus_M_contig1317 220536..220620 +
1690962781.0866485-CDS-F-serratus_M_contig1317:220535..2206201690962781.0866485-CDS-F-serratus_M_contig1317:220535..220620Fucus serratus maleCDSF-serratus_M_contig1317 220536..220620 +
1622929278.348842-CDS-F-serratus_M_contig1317:220963..2210711622929278.348842-CDS-F-serratus_M_contig1317:220963..221071Fucus serratus maleCDSF-serratus_M_contig1317 220964..221071 +
1690962781.094167-CDS-F-serratus_M_contig1317:220963..2210711690962781.094167-CDS-F-serratus_M_contig1317:220963..221071Fucus serratus maleCDSF-serratus_M_contig1317 220964..221071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1317.2361.1

>prot_F-serratus_M_contig1317.2361.1 ID=prot_F-serratus_M_contig1317.2361.1|Name=mRNA_F-serratus_M_contig1317.2361.1|organism=Fucus serratus male|type=polypeptide|length=310bp
PLNAGGGKDSSWVPPSEFPPGHEESPVEGGGTAAGTRCLANADESEGSGK
HGDKSNGELASSNGTGHAEYLKALGPLKLRDEADPFSMDLGVTEKGDIVK
VLEASAADARWVRVAYRGREDGWILSANKRGPTLVPHEDPASAAADFDAQ
EASHAVAAAAASVAAAENLDDRPLKSKGGNESSWVPPSEFPPGHEESSAA
AGTVEVAKTGGEEKEGSGKTLGSDPIGDSAESAGEIGRPEFMQTLGPLKI
RDEPDPFSMDLGVTVTGEIVKVLEASATDTRWLRVAYRGREDGWILSANK
RGPTLVPLDD
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mRNA from alignment at F-serratus_M_contig1317:218712..221073+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1317.2361.1 ID=mRNA_F-serratus_M_contig1317.2361.1|Name=mRNA_F-serratus_M_contig1317.2361.1|organism=Fucus serratus male|type=mRNA|length=2362bp|location=Sequence derived from alignment at F-serratus_M_contig1317:218712..221073+ (Fucus serratus male)
CCCTTGAACGCTGGGGGCGGGAAGGATTCGTCGTGGGTGCCGCCGAGCGA
GTTCCCGCCAGGGCACGAAGAGTCGCCGGTCGAGGGAGGGGGGACGGCGG
CGGGGACGAGGTGCTTGGCCAATGCTGACGAGAGTGAGGGGTCGGGCAAG
CACGGCGACAAATCTAACGGGGAACTGGCGAGCTCTAACGGTACCGGACA
CGCGGAGTACTTGAAGGCCCTTGGGTGCGTCGATAGTTGGAGATCGCGGA
GATTGAACCCCTCTCCCTAATACAAATGAACGATTGCATCCTCTTCCTCC
TCTTACGACGGATCGGTCGGAGCAATTTGTCCGATAGACTACAAAAAGCA
ACTTGTCATGGTTTTGTTTACAATATAACAGATACGGTGTGCTCGTACAA
CACAGAGCCTATAGGGTTGTCGTAATTGTTTCCGACAAGGTTTTCCACAC
CATGAAGCGGGATTGTCTTGACCAAAATGTCCCGTCGGTGAAAGTAAGGT
GGGCTAAATCGCTGTATTAAATGAACCCAAGACGGTTTTTTTTTTTTTTA
AACTCGCCTTTTTTGTCCTCCGAGTCTTGATCCCGGTTCTCTTCTGATTG
ACTGGATTCCGCTCCGGCGGCCAGGCCTCTCAAACTCCGAGACGAGGCGG
ACCCTTTCTCGATGGATTTGGGGGTGACAGAGAAGGGGGACATCGTGAAG
GTGTTGGAGGTGAGTAGGAAGCGTTTTGATTTCGCTGTGTTTACACAAAT
CAGAGCGAAAATAGAAGAAAAGAGAGAAAGAGAGAGAGAGAGAGAAAGAG
AGCCGATTTCGTGCGTCCTGACTTAACTTGAGTTACTCGGACAAAAGAAC
AACGGAGACGATTGCCATTTTATTGAAATGTATGGAGGCCGCCAAACAAT
CTCCCCACGCTTCACGCCGCCCCTTGCCTCGCCTCGATACACTCCGATAC
CCTGTTATGCTTTTCCCAGGCATCCGCGGCCGATGCTCGATGGGTAAGGG
TTGCGTACCGCGGGCGAGAGGACGGGTGGATCCTCTCGGCCAACAAGAGG
GGCCCCACCCTCGTGCCCCACGAAGATCCCGCATCTGCCGCCGCGGATTT
CGATGCCCAGGAGGCGTCGCACGCGGTCGCCGCCGCCGCCGCATCAGTCG
CTGCTGCAGAGAACCTCGACGACCGACCCTTGAAATCGAAGGGCGGGAAT
GAATCATCGTGGGTGCCACCGAGCGAGTTCCCGCCTGGGCACGAGGAGTC
TTCAGCCGCGGCGGGAACAGTCGAGGTGGCGAAGACGGGTGGCGAGGAGA
AGGAGGGATCTGGGAAGACCCTCGGCAGCGATCCTATTGGAGATTCGGCG
GAATCGGCCGGCGAGATCGGACGTCCCGAGTTCATGCAGACGCTCGGGTG
CGACGATTCCCGCGGCGTATGCAAGCAATTGCGACATTGGATTGAGTGTC
TTGGATAGTGACAGCCATAAGCGTTAGCGGTTATGAACCCCTCACCTCAC
CTGACCCTTTATCTTGGAGGAGTGATAAAACGTGTCAATGAAGCTTCTCG
TGACACCGGGAACGGGGAAAGTGGAACATCGGCATGCATGTGTGTAGCTC
TAGGTGTACATAATTCACAGCATTCACTCGCCTATATTCAGAGACCGAGA
GGGTTTTGTTTCAGAAGCCATTGGTTTTTTTTTAGGGCACGGAACAAGGC
AGTTGTGTTCGAACCCCCCCCCCCCCCCCCCCCCCCCTCCTCCTCCCTCT
CCTAGAGGCCACGCCATTTGTCCCCGCCGCTGAACACGACGTCTGTCTCT
TGGCTGTACTTATTCGGCGGCCAGGCCTCTCAAGATTCGGGACGAGCCCG
ACCCTTTCTCGATGGACTTGGGCGTAACCGTGACGGGAGAAATCGTTAAG
GTGTTGGAGGTGAGGCGGAGGCGTGTACGATCGTAGTAGGTAGGTTTGCG
TACGAACCGGAGTGAGGAGTAAAGGAAAGAGAACTGCATCGGGCTGACTC
GACATCGTGGGTTGACTACAGTACTTACTGTAGGTAGTTCTTGGAAGTCT
TCCAGACCCTAAAGGTCGAAAGCCAAGCCCAGAGCGAATCAAGACCTGAG
TGATTGTGTCGAGTCAGCCCTGAAGAAACGTTTTTTTCAACACAGACTCA
AGCCCCGAAGCAGCCCCGTTTCTTTGCGAAGCTCACTCCAAACCCGCTGC
TCTGCCTTGCTCGGCCTCTCTTCACGCCGGCACCCTATTATGCCCCTACC
AGGCATCCGCGACTGATACTCGATGGTTAAGGGTTGCGTACCGCGGGCGA
GAGGACGGGTGGATCCTCTCCGCCAACAAGAGAGGTCCCACCCTCGTGCC
CCTCGACGATCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1317:218712..221073+

>mRNA_F-serratus_M_contig1317.2361.1 ID=mRNA_F-serratus_M_contig1317.2361.1|Name=mRNA_F-serratus_M_contig1317.2361.1|organism=Fucus serratus male|type=CDS|length=1860bp|location=Sequence derived from alignment at F-serratus_M_contig1317:218712..221073+ (Fucus serratus male)
CCCTTGAACGCTGGGGGCGGGAAGGATTCGTCGTGGGTGCCGCCGAGCGA
GTTCCCGCCAGGGCACGAAGAGTCGCCGGTCGAGGGAGGGGGGACGGCGG
CGGGGACGAGGTGCTTGGCCAATGCTGACGAGAGTGAGGGGTCGGGCAAG
CACGGCGACAAATCTAACGGGGAACTGGCGAGCTCTAACGGTACCGGACA
CGCGGAGTACTTGAAGGCCCTTGGCCCTTGAACGCTGGGGGCGGGAAGGA
TTCGTCGTGGGTGCCGCCGAGCGAGTTCCCGCCAGGGCACGAAGAGTCGC
CGGTCGAGGGAGGGGGGACGGCGGCGGGGACGAGGTGCTTGGCCAATGCT
GACGAGAGTGAGGGGTCGGGCAAGCACGGCGACAAATCTAACGGGGAACT
GGCGAGCTCTAACGGTACCGGACACGCGGAGTACTTGAAGGCCCTTGGGC
CTCTCAAACTCCGAGACGAGGCGGACCCTTTCTCGATGGATTTGGGGGTG
ACAGAGAAGGGGGACATCGTGAAGGTGTTGGAGGCCTCTCAAACTCCGAG
ACGAGGCGGACCCTTTCTCGATGGATTTGGGGGTGACAGAGAAGGGGGAC
ATCGTGAAGGTGTTGGAGGCATCCGCGGCCGATGCTCGATGGGTAAGGGT
TGCGTACCGCGGGCGAGAGGACGGGTGGATCCTCTCGGCCAACAAGAGGG
GCCCCACCCTCGTGCCCCACGAAGATCCCGCATCTGCCGCCGCGGATTTC
GATGCCCAGGAGGCGTCGCACGCGGTCGCCGCCGCCGCCGCATCAGTCGC
TGCTGCAGAGAACCTCGACGACCGACCCTTGAAATCGAAGGGCGGGAATG
AATCATCGTGGGTGCCACCGAGCGAGTTCCCGCCTGGGCACGAGGAGTCT
TCAGCCGCGGCGGGAACAGTCGAGGTGGCGAAGACGGGTGGCGAGGAGAA
GGAGGGATCTGGGAAGACCCTCGGCAGCGATCCTATTGGAGATTCGGCGG
AATCGGCCGGCGAGATCGGACGTCCCGAGTTCATGCAGACGCTCGGGCAT
CCGCGGCCGATGCTCGATGGGTAAGGGTTGCGTACCGCGGGCGAGAGGAC
GGGTGGATCCTCTCGGCCAACAAGAGGGGCCCCACCCTCGTGCCCCACGA
AGATCCCGCATCTGCCGCCGCGGATTTCGATGCCCAGGAGGCGTCGCACG
CGGTCGCCGCCGCCGCCGCATCAGTCGCTGCTGCAGAGAACCTCGACGAC
CGACCCTTGAAATCGAAGGGCGGGAATGAATCATCGTGGGTGCCACCGAG
CGAGTTCCCGCCTGGGCACGAGGAGTCTTCAGCCGCGGCGGGAACAGTCG
AGGTGGCGAAGACGGGTGGCGAGGAGAAGGAGGGATCTGGGAAGACCCTC
GGCAGCGATCCTATTGGAGATTCGGCGGAATCGGCCGGCGAGATCGGACG
TCCCGAGTTCATGCAGACGCTCGGGCCTCTCAAGATTCGGGACGAGCCCG
ACCCTTTCTCGATGGACTTGGGCGTAACCGTGACGGGAGAAATCGTTAAG
GTGTTGGAGGCCTCTCAAGATTCGGGACGAGCCCGACCCTTTCTCGATGG
ACTTGGGCGTAACCGTGACGGGAGAAATCGTTAAGGTGTTGGAGGCATCC
GCGACTGATACTCGATGGTTAAGGGTTGCGTACCGCGGGCGAGAGGACGG
GTGGATCCTCTCCGCCAACAAGAGAGGTCCCACCCTCGTGCCCCTCGACG
ATGCATCCGCGACTGATACTCGATGGTTAAGGGTTGCGTACCGCGGGCGA
GAGGACGGGTGGATCCTCTCCGCCAACAAGAGAGGTCCCACCCTCGTGCC
CCTCGACGAT
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