mRNA_F-serratus_M_contig1317.2359.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1317.2359.1
Unique NamemRNA_F-serratus_M_contig1317.2359.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1317.2359.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.190e-25
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:  148 STAEVGDYMRAAGTSKLREEADSLSMEIGTVAAGELVRVVETSGLWVRVNYRGASDGWVLTANKRGPILSPAE 366
            +TA VG YMRAAG  KLREEADSLS+E+GTV+ GELVRV +TSGLWVRV YRG S GWVLTANKRG  L+PAE
Sbjct:  498 TTASVGGYMRAAGQLKLREEADSLSLELGTVSRGELVRVEQTSGLWVRVLYRGDSSGWVLTANKRGASLTPAE 570
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BLAST of mRNA_F-serratus_M_contig1317.2359.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.410e-24
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:  148 STAEVGDYMRAAGTSKLREEADSLSMEIGTVAAGELVRVVETSGLWVRVNYRGASDGWVLTANKRGPILSPAE 366
            +TA VG YMRAAG  KLREEADSLS+E+GTV+ G+LV+V +TSGLWVRV YRG S GWVLTANKRG  L+PAE
Sbjct:   59 TTASVGGYMRAAGQLKLREEADSLSLELGTVSRGQLVKVEQTSGLWVRVLYRGDSSGWVLTANKRGASLTPAE 131
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1317.2359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7L6_ECTSI2.190e-2576.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4T0_9PHAE1.410e-2473.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1317contigF-serratus_M_contig1317:210204..213967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size580
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1317.2359.1prot_F-serratus_M_contig1317.2359.1Fucus serratus malepolypeptideF-serratus_M_contig1317 210747..213840 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929278.1506143-UTR-F-serratus_M_contig1317:210203..2102301622929278.1506143-UTR-F-serratus_M_contig1317:210203..210230Fucus serratus maleUTRF-serratus_M_contig1317 210204..210230 +
1690962781.009502-UTR-F-serratus_M_contig1317:210203..2102301690962781.009502-UTR-F-serratus_M_contig1317:210203..210230Fucus serratus maleUTRF-serratus_M_contig1317 210204..210230 +
1622929278.1881912-UTR-F-serratus_M_contig1317:210602..2107461622929278.1881912-UTR-F-serratus_M_contig1317:210602..210746Fucus serratus maleUTRF-serratus_M_contig1317 210603..210746 +
1690962781.0199454-UTR-F-serratus_M_contig1317:210602..2107461690962781.0199454-UTR-F-serratus_M_contig1317:210602..210746Fucus serratus maleUTRF-serratus_M_contig1317 210603..210746 +
1622929278.2312965-UTR-F-serratus_M_contig1317:213840..2139671622929278.2312965-UTR-F-serratus_M_contig1317:213840..213967Fucus serratus maleUTRF-serratus_M_contig1317 213841..213967 +
1690962781.046581-UTR-F-serratus_M_contig1317:213840..2139671690962781.046581-UTR-F-serratus_M_contig1317:213840..213967Fucus serratus maleUTRF-serratus_M_contig1317 213841..213967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929278.2098796-CDS-F-serratus_M_contig1317:210746..2108451622929278.2098796-CDS-F-serratus_M_contig1317:210746..210845Fucus serratus maleCDSF-serratus_M_contig1317 210747..210845 +
1690962781.0291123-CDS-F-serratus_M_contig1317:210746..2108451690962781.0291123-CDS-F-serratus_M_contig1317:210746..210845Fucus serratus maleCDSF-serratus_M_contig1317 210747..210845 +
1622929278.2206168-CDS-F-serratus_M_contig1317:213657..2138401622929278.2206168-CDS-F-serratus_M_contig1317:213657..213840Fucus serratus maleCDSF-serratus_M_contig1317 213658..213840 +
1690962781.0378673-CDS-F-serratus_M_contig1317:213657..2138401690962781.0378673-CDS-F-serratus_M_contig1317:213657..213840Fucus serratus maleCDSF-serratus_M_contig1317 213658..213840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1317.2359.1

>prot_F-serratus_M_contig1317.2359.1 ID=prot_F-serratus_M_contig1317.2359.1|Name=mRNA_F-serratus_M_contig1317.2359.1|organism=Fucus serratus male|type=polypeptide|length=94bp
MRAAGTSKLREEADSLSMEIGTVAAGELVRVVETSGLWVRVNYRGASDGW
VLTANKRGPILSPAEGARRRGPGVRGSGGSGGVGVGGRCFNGK*
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mRNA from alignment at F-serratus_M_contig1317:210204..213967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1317.2359.1 ID=mRNA_F-serratus_M_contig1317.2359.1|Name=mRNA_F-serratus_M_contig1317.2359.1|organism=Fucus serratus male|type=mRNA|length=3764bp|location=Sequence derived from alignment at F-serratus_M_contig1317:210204..213967+ (Fucus serratus male)
GCGGCTCAGGTCGCTTTCCAGAAACAGGTGCGCGGTGGCGAGGACCCGGC
GGGCGGTTCGCGCCGCGAGATTCACAAGTGGGGACGCGATGCCATGAGTG
TACCTCACGAGCCTTCTTCCGTCCCCTTGTGCTGCTGCCCGGCACCTCAG
GCACCTATCTGTTTTCCCCGTGTGTTTTTTTTCGCTCTACAGTGATCCGT
GCTCGAGTACAAAGGCAAAGGGACACTTTCGGTGAAGGGGGGGGGGGGGG
GGGGGGATCCAACCGCACGTTTTCTGCATTATTTAGCTGCGCAGCGTTTC
AGTTTTTCTTTGTATTGTTTTTTCTCCCTTAACCGTCAAGTATGCGACTG
ACAAACAAACGCCTTGGTCTTTTCTATAAAACCCATACCCGCGCACCAGG
AAGAAGCGGACCAAGCTGCGGCCACCCCTAGCGCCGCTGCCGGCCCATCT
CCGGATCAAGCGGCCATCGCTGAAGCTGCTGCATCAGCACCAATACCGGC
ATCGGCAGCTCCCGTCGACTCCACGGCGGAGGTCGGTGATTACATGCGGG
CGGCGGGGACGTCCAAGCTTCGAGAAGAGGCGGACTCTTTGTCGATGGAG
ATAGGCACTGTTGCCGCCGGGGAGCTGGTCAGGGTGGTCGAGGTGAGAGA
GCGGAAGAGGTCACCTGTACCGGTAGGTATACTTGGTGATTGTATATTAT
GTATCAATGTATGTGTATCTTAAGTATGTATGTATATATGGTGATCACTT
ATAGCAGAGGAAGGGTTTTGGATCAACCGGGTAAGGTTGCCAACCCAACC
CTGCTCGTGGTCGTAAGTCCCCGTTGGCTCCTGAGAAGTTGGTCTCGCGA
GACAGGTTCTTCGGCCGTCTCGTCCCGCGTCAGCCTGCTCACTCACTGTC
CACACTCTCAGACTGAGTCTGGTGCTTACTCACGGGATTCCTCTGCTCTC
CTTTCGTCCATTTATATATACCCTAGTTGTAGTAAATTGAAGTTGAAGAT
TTTCGACAACAAACTTGACAAAAAAAGTCCGTGTACCCGTATTCAGGTTA
TACTGACACATCAACCATTGGTTGACGAGTTGTAAGAGTGCTGAACTTGC
ATCGCGATAAAAATTGCAAGGCGTGAACCGGGGAGAGATGGGAAGATCCT
TTGTGACCACAGGCAGGATGGTAATTAGAGGTCCATCGGCTATAAGTGTG
ATTAAAAAATAAAAAAAAAGAGAGTCGAAAGGAATACGAATATTTTTGCA
ACTTGGTTCACCATTTTTTGTTTAATTTTTTTCTTCACAGGCGACTTTTC
TCAATAAATGCCAGGTGTTGACAAATGTTCATTCCCCTCCCCCCTCTCGC
CCGAAACGAAAATATGTATAGATATATATATACTGAAAATACACTAAATA
TAATTAGTAAAATGTACAGTGTACTCCTACTTGTATTCGCAAAAAAACGA
TTACGAACAAAAAAATGCGAAACAAAATCATTTTTTGAACCTGTTGAAAG
AATTATCTGAAAACATGTATAAAACTTGTGAGCATCGCCCAGACCGGGGG
GGAAATGTCAAAACGTTTTGGTGGGATCATAGGCTGCAAAGACAAAATCT
CTTCGTGGCATTTAGACGGGTTTCCTAATGGCAGTAACATTGGGTCAACA
GTATAATGTCGGGGAGAACCCCCACCGTTATACTGTACGCTTACATTAAT
CGCCATACAGGGACACCACAAAAACAGCAAAAAACTAAAGACACGATGAG
CCTGGATAGAGGTAAAAAACATTGTCTAGGATCGGATGGGTGTCAGCACT
ATTATAATAATATTACTAGATTATACGCCAACAAGCACATTACAGATTGA
CAAGGCAGGAGACAAGGTTTTGCTTTATGATAATTATCAGGTGAATCTAA
CTGCTAGAGGCTAAAAGGATAGAGAAGTAGTATCATCTTTGCAATGCAAT
TTATGGTTCAAATAGTAGTTAGTAATATAATATAGTTATCTAGAATTATC
TAGTATCGTATTATCTATATATCTGTGAAAGCGAAACCATTATTACTACA
GTATAGTATAGTATATTATAGTCTATTTCTGTGAAAGCGCAAGAGAGAAG
TAAGGTGCATGATGATATAATACTACGGTATATAATACTGCCCGAGTGGT
CTATTGATAGTAGGTAACCTGCATCCAGTACCTGCTAGTGCGGAAGTCGT
GAGTTCGATTCTTAGCTTAAGCAGAATTTGTGTTCTTTCTTGCGTAACGG
AAAGCGTGGGAACGTGAGTAAGTAAAATTCAACCATTGGTTGACGAGTTG
TAAGAGTGCTGAACTTGCATCGCGATAAAATTTGCAAAGCGTGAACCGGA
GAGAGATGGGAAGATCCTTTGTGACCACAGGCAGGATGGTAATTAGAGGT
CCATCGGCTATAAGTGTACAGGGGTAACACGCTATTATATTAGTTGGAAA
GGGCAAAAGTAGGTCTACAATCATCATGGTATCTACAGCTAACCACCTGG
GATTGTTTCGACAAAAATCTGAACGCATCTAAACCTTTTAAGCATCCCGC
CGAAGCCTTTAGGTGGAAACATAGACTGCCAATGCAAAAAATCTTTATGG
CATTTAAACGGATTCCCCGATGGTCGTAGCGTAGGGCCAACAGTTAATGT
CGTTTTTAGTTTTCAAGTGTCAGAAGGTCGAAACTTTTAAAATTAAAGCC
AACGGAAACACTGGGTACGGTATGTGTGGGTGGGTGTTGTCTTTACGTTT
GGCGGGACTTGGGTGTTTTTCCTCGCGATCGATCGGGCCACCACCAGCCA
TCAGTCCCCCCCCACTAGGCAGCGTCTTCCTTGGCCGCGGTAGGCAGCGT
GTCATATATATATATTATTGCGAGCGTTTAGCGAGCTTCTAATCTGTGTG
CTGTATCAATTTGAGCTCGGGTGTATCAAAATACGGGGCACTTTGACCAA
TCATGAAATGTGCCGTATGTTCCTTTCCGTAATGTGTCCACCCCAGAGTA
TGCTCAGAATTTcccCCCCCTGTTTGGTTAAACCAACACCTGTGTTCAGG
GCGGGTTTTAGATGAAAAAAAGGGGCAGAGGGAACAAGGAACGTGGAACT
TCGAATTACTTGCCCTGTTTGATTAAAAACCAACACCTGTGTTCAGCTGA
CGATAGTTACCAAACTACCAGTATCCTTTAGCGAGCGTATAGCGATAGCT
ACCCTATCTTATTTATGTATATAAGCCCTCTTTCGCCGGATCCAAACGGT
CGTGGCACAAACCTGTACATGCCTCGGTTTTTCCTCTTTTCCTCCTCCCC
CCTTGTGCCCCTGTGGAGTGTTTTCCCCCCTACCGAAACGCTCCTCCAGT
GTTCTACGTATTCTATCCTCTACAAAAAAGACAGCACGCCTAGACTTACA
GGTAAAAAAAAAAAAAAAAAAATCCCCTTTTTCCGCACTTGTTGTCCTCT
GCAGACGTCTGGTTTGTGGGTTCGCGTGAATTACCGAGGTGCGAGTGACG
GATGGGTTCTCACGGCGAACAAAAGGGGGCCTATCCTGTCGCCGGCCGAA
GGAGCCCGCCGACGCGGCCCAGGAGTTCGAGGATCAGGAGGCAGCGGCGG
GGTCGGGGTCGGGGGCCGATGTTTCAACGGCAAATGACATGGGGGACGAT
GACCGACAGCTCACCGGTGCGAAAGCTGGTTCGACAGCTCCATCCGAGCA
AATGGGAGACGTCTGGGAGAATGCCCGGGATGCCACGCCACCATCTTCAC
AGCCGCCGCCGCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1317:210204..213967+

>mRNA_F-serratus_M_contig1317.2359.1 ID=mRNA_F-serratus_M_contig1317.2359.1|Name=mRNA_F-serratus_M_contig1317.2359.1|organism=Fucus serratus male|type=CDS|length=564bp|location=Sequence derived from alignment at F-serratus_M_contig1317:210204..213967+ (Fucus serratus male)
ATGCGGGCGGCGGGGACGTCCAAGCTTCGAGAAGAGGCGGACTCTTTGTC
GATGGAGATAGGCACTGTTGCCGCCGGGGAGCTGGTCAGGGTGGTCGAGA
TGCGGGCGGCGGGGACGTCCAAGCTTCGAGAAGAGGCGGACTCTTTGTCG
ATGGAGATAGGCACTGTTGCCGCCGGGGAGCTGGTCAGGGTGGTCGAGAC
GTCTGGTTTGTGGGTTCGCGTGAATTACCGAGGTGCGAGTGACGGATGGG
TTCTCACGGCGAACAAAAGGGGGCCTATCCTGTCGCCGGCCGAAGGAGCC
CGCCGACGCGGCCCAGGAGTTCGAGGATCAGGAGGCAGCGGCGGGGTCGG
GGTCGGGGGCCGATGTTTCAACGGCAAATGAACGTCTGGTTTGTGGGTTC
GCGTGAATTACCGAGGTGCGAGTGACGGATGGGTTCTCACGGCGAACAAA
AGGGGGCCTATCCTGTCGCCGGCCGAAGGAGCCCGCCGACGCGGCCCAGG
AGTTCGAGGATCAGGAGGCAGCGGCGGGGTCGGGGTCGGGGGCCGATGTT
TCAACGGCAAATGA
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